Mercurial > repos > nml > mykrobe_parser

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planemo upload for repository https://github.com/phac-nml/mykrobe-parser commit 97945a3ad655f1a0f99f577d0d423124460d900a
author nml
date Tue, 24 Oct 2023 21:28:06 +0000
parents 8e7e5a660942
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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6
8e7e5a660942 planemo upload for repository https://github.com/phac-nml/mykrobe-parser commit 077a66175f3666924b42f216bbcb671ee0d026f2
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1 {
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2 "ERR841495_L5": {
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3 "susceptibility": {
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5 "predict": "S"
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6 },
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7 "Moxifloxacin": {
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8 "predict": "S"
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9 },
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11 "predict": "S"
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12 },
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14 "predict": "S"
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17 "predict": "S"
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20 "predict": "S"
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23 "predict": "S"
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24 },
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26 "predict": "S"
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29 "predict": "S"
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32 "predict": "S"
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35 "predict": "S"
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36 }
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38 "phylogenetics": {
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39 "phylo_group": {
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41 "percent_coverage": 99.715,
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61 "calls_summary": {
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103 ],
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104 "contamination_depths": [],
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105 "filter": [],
8e7e5a660942 planemo upload for repository https://github.com/phac-nml/mykrobe-parser commit 077a66175f3666924b42f216bbcb671ee0d026f2
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106 "conf": 18657
8e7e5a660942 planemo upload for repository https://github.com/phac-nml/mykrobe-parser commit 077a66175f3666924b42f216bbcb671ee0d026f2
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107 },
8e7e5a660942 planemo upload for repository https://github.com/phac-nml/mykrobe-parser commit 077a66175f3666924b42f216bbcb671ee0d026f2
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108 "_cls": "Call.VariantCall"
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109 }
8e7e5a660942 planemo upload for repository https://github.com/phac-nml/mykrobe-parser commit 077a66175f3666924b42f216bbcb671ee0d026f2
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110 }
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111 }
8e7e5a660942 planemo upload for repository https://github.com/phac-nml/mykrobe-parser commit 077a66175f3666924b42f216bbcb671ee0d026f2
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112 }
8e7e5a660942 planemo upload for repository https://github.com/phac-nml/mykrobe-parser commit 077a66175f3666924b42f216bbcb671ee0d026f2
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113 }
8e7e5a660942 planemo upload for repository https://github.com/phac-nml/mykrobe-parser commit 077a66175f3666924b42f216bbcb671ee0d026f2
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114 },
8e7e5a660942 planemo upload for repository https://github.com/phac-nml/mykrobe-parser commit 077a66175f3666924b42f216bbcb671ee0d026f2
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115 "kmer": 21,
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116 "probe_sets": [
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117 "tb-species-170421.fasta.gz",
8e7e5a660942 planemo upload for repository https://github.com/phac-nml/mykrobe-parser commit 077a66175f3666924b42f216bbcb671ee0d026f2
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118 "tb-hunt-probe-set-jan-03-2019.fasta.gz",
8e7e5a660942 planemo upload for repository https://github.com/phac-nml/mykrobe-parser commit 077a66175f3666924b42f216bbcb671ee0d026f2
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119 "tb.lineage.20200930.probes.fa.gz"
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120 ],
8e7e5a660942 planemo upload for repository https://github.com/phac-nml/mykrobe-parser commit 077a66175f3666924b42f216bbcb671ee0d026f2
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121 "files": [
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122 "ERR841495_1.fastq",
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123 "ERR841495_2.fastq"
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124 ],
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125 "version": {
8e7e5a660942 planemo upload for repository https://github.com/phac-nml/mykrobe-parser commit 077a66175f3666924b42f216bbcb671ee0d026f2
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126 "mykrobe-predictor": "v0.10.0",
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127 "mykrobe-atlas": "v0.10.0"
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128 },
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129 "genotype_model": "kmer_count"
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130 }
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131 }