Mercurial > repos > nml > mykrobe_parser

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planemo upload for repository https://github.com/phac-nml/mykrobe-parser commit 97945a3ad655f1a0f99f577d0d423124460d900a
author nml
date Tue, 24 Oct 2023 21:28:06 +0000
parents 8e7e5a660942
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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6
8e7e5a660942 planemo upload for repository https://github.com/phac-nml/mykrobe-parser commit 077a66175f3666924b42f216bbcb671ee0d026f2
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1 {
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2 "SRR1710097_L2": {
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3 "susceptibility": {
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4 "Ofloxacin": {
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5 "predict": "S"
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6 },
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7 "Moxifloxacin": {
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8 "predict": "S"
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9 },
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10 "Isoniazid": {
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11 "predict": "S"
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12 },
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13 "Kanamycin": {
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14 "predict": "S"
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15 },
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16 "Ethambutol": {
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17 "predict": "S"
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18 },
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19 "Streptomycin": {
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20 "predict": "S"
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21 },
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22 "Ciprofloxacin": {
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23 "predict": "S"
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24 },
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25 "Pyrazinamide": {
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26 "predict": "S"
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27 },
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28 "Rifampicin": {
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29 "predict": "S"
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30 },
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31 "Amikacin": {
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32 "predict": "S"
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33 },
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34 "Capreomycin": {
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35 "predict": "S"
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36 }
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37 },
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38 "phylogenetics": {
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39 "phylo_group": {
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40 "Mycobacterium_tuberculosis_complex": {
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41 "percent_coverage": 99.686,
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42 "median_depth": 420
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43 }
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44 },
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45 "sub_complex": {
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46 "Unknown": {
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49 }
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52 "Mycobacterium_tuberculosis": {
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54 "median_depth": 403.0
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55 }
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56 },
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59 "lineage2.2.4"
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61 "calls_summary": {
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62 "lineage2.2.4": {
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64 "tree_depth": 3,
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65 "genotypes": {
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69 }
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70 }
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71 },
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72 "calls": {
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73 "lineage2.2.4": {
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74 "lineage2": {
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75 "G497491A": {
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86 "info": {
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89 "percent_coverage": 0.0,
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94 },
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95 "alternate": {
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99 "kmer_count": 8731,
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100 "klen": 21
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101 }
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207 "mykrobe-atlas": "v0.10.0"
8e7e5a660942 planemo upload for repository https://github.com/phac-nml/mykrobe-parser commit 077a66175f3666924b42f216bbcb671ee0d026f2
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208 },
8e7e5a660942 planemo upload for repository https://github.com/phac-nml/mykrobe-parser commit 077a66175f3666924b42f216bbcb671ee0d026f2
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209 "genotype_model": "kmer_count"
8e7e5a660942 planemo upload for repository https://github.com/phac-nml/mykrobe-parser commit 077a66175f3666924b42f216bbcb671ee0d026f2
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210 }
8e7e5a660942 planemo upload for repository https://github.com/phac-nml/mykrobe-parser commit 077a66175f3666924b42f216bbcb671ee0d026f2
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211 }