Mercurial > repos > nml > mykrobe_parser

comparison mykrobe_parser.xml @ 7:12b397ad8687 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/phac-nml/mykrobe-parser commit 97945a3ad655f1a0f99f577d0d423124460d900a
author nml
date Tue, 24 Oct 2023 21:28:06 +0000
parents 8e7e5a660942
children
comparison
equal deleted inserted replaced
6:8e7e5a660942 7:12b397ad8687
1 <tool id="mykrobe_parseR" name="mykrobe_parseR" version="@VERSION@+galaxy1" profile="16.04"> 1 <tool id="mykrobe_parseR" name="mykrobe_parseR" version="@VERSION@+galaxy2" profile="16.04">
2 <macros> 2 <macros>
3 <token name="@VERSION@">0.1.4.1</token> 3 <token name="@VERSION@">0.1.4.1</token>
4 </macros> 4 </macros>
5 <requirements> 5 <requirements>
6 <requirement type="package" version="3.4.1">r-base</requirement> 6 <requirement type="package" version="3.4.1">r-base</requirement>
69 argument="-n" 69 argument="-n"
70 optional="true" 70 optional="true"
71 label="Name of Run"/> 71 label="Name of Run"/>
72 </inputs> 72 </inputs>
73 <outputs> 73 <outputs>
74 <data name="output_jsondata" from_work_dir="output-jsondata.csv" format="csv" label="jsondata"/> 74 <data name="output_jsondata" from_work_dir="output-jsondata.csv" format="csv" label="Mykrobe jsondata"/>
75 <data name="output_report" from_work_dir="output-report.csv" format="csv" label="report"/> 75 <data name="output_report" from_work_dir="output-report.csv" format="csv" label="Mykrobe report"/>
76 </outputs> 76 </outputs>
77 <tests> 77 <tests>
78 <test> 78 <test>
79 <param name="input" value="prediction_2019/data/ERR031480_L6.json,prediction_2019/data/ERR125628_MBOV.json,prediction_2019/data/ERR181314_L9.json,prediction_2019/data/ERR234162_L3.json,prediction_2019/data/ERR2659153.json,prediction_2019/data/ERR266106_MCAN.json,prediction_2019/data/ERR2704812_L5.json,prediction_2019/data/ERR3335753_L1.json,prediction_2019/data/ERR4143897_MPIN.json,prediction_2019/data/ERR756348_L7.json,prediction_2019/data/ERR841495_L5.json,prediction_2019/data/SRR17089001.json,prediction_2019/data/SRR1710097_L2.json,prediction_2019/data/SRR3500411_MMUN.json,prediction_2019/data/SRR9157804.json"/> 79 <param name="input" value="prediction_2019/data/ERR031480_L6.json,prediction_2019/data/ERR125628_MBOV.json,prediction_2019/data/ERR181314_L9.json,prediction_2019/data/ERR234162_L3.json,prediction_2019/data/ERR2659153.json,prediction_2019/data/ERR266106_MCAN.json,prediction_2019/data/ERR2704812_L5.json,prediction_2019/data/ERR3335753_L1.json,prediction_2019/data/ERR4143897_MPIN.json,prediction_2019/data/ERR756348_L7.json,prediction_2019/data/ERR841495_L5.json,prediction_2019/data/SRR17089001.json,prediction_2019/data/SRR1710097_L2.json,prediction_2019/data/SRR3500411_MMUN.json,prediction_2019/data/SRR9157804.json"/>
80 <param name="panel" value="2019"/> 80 <param name="panel" value="2019"/>