Mercurial > repos > nml > mykrobe_parser

diff test-data/output-report.csv @ 0:6eae14751768 draft

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planemo upload for repository https://github.com/phac-nml/mykrobe-parser commit 0b64469b5d819a9c5b9ea85d07ccbc3b5fb6b25e-dirty
author nml
date Fri, 28 Sep 2018 16:01:47 -0400
parents
children 8e7e5a660942
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/output-report.csv	Fri Sep 28 16:01:47 2018 -0400
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+"file","Mykrobe_fabG1","Mykrobe_katG","Mykrobe_ahpC","Mykrobe_inhA","Mykrobe_ndh","Isoniazid_R_mutations","Isoniazid_Prediction","Mykrobe_rpoB","Rifampicin_R_mutations","Rifampicin_Prediction","Mykrobe_embB","Mykrobe_embA","Ethambutol_R_mutations","Ethambutol_Prediction","Mykrobe_pncA","Mykrobe_rpsA","Pyrazinamide_R_mutations","Pyrazinamide_Prediction","Mykrobe_gyrA","Moxifloxacin_Ofloxacin_R_mutations","Moxifloxacin_Ofloxacin_Prediction","Mykrobe_rpsL","Mykrobe_Streptomycin_rrs","Mykrobe_Streptomycin_gid","Streptomycin_R_mutations","Streptomycin_Prediction","Mykrobe_Amikacin_rrs","Amikacin_R_mutations","Amikacin_Prediction","Mykrobe_Capreomycin_rrs","Mykrobe_Capreomycin_tlyA","Capreomycin_R_mutations","Capreomycin_Prediction","Mykrobe_Kanamycin_rrs","Mykrobe_Kanamycin_eis","Kanamycin_R_mutations","Kanamycin_Prediction","Lims_Comment","Lims_INTComment","Mykrobe_Workflow_Version","mykrobe_version","Mykrobe_Resistance_probe_set","Mykrobe_min_depth_default_5","Mykrobe_min_conf_default_10","LIMS_file","LIMS_filename"
+"sample","No Mutation","S315N","No Mutation","No Mutation","No Mutation","katG_S315N-S315N:15:0:99999996","R","S450L","rpoB_S450L-S450L:14:0:99999996","R","No Mutation","No Mutation",NA,"S","Q141P","No Mutation","pncA_Q141P-Q141P:14:0:99999996","R","No Mutation",NA,"S","K43R","No Mutation","No Mutation","rpsL_K43R-K43R:24:0:99999995","R","A1401G","rrs_A1401G-A1401G:17:0:99999996","R","A1401G","No Mutation","rrs_A1401G-A1401G:17:0:99999996","R","A1401G","No Mutation","rrs_A1401G-A1401G:17:0:99999996","R","","","","v0.5.6-0-gbd7923a-dirty","tb-walker-probe-set-feb-09-2017.fasta.gz","5","10","",""