--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/prediction_2020/data/ERR125628_MBOV.json	Fri Sep 22 17:24:02 2023 +0000
@@ -0,0 +1,170 @@
+{
+    "ERR125628_MBOV": {
+        "susceptibility": {
+            "Ofloxacin": {
+                "predict": "S"
+            },
+            "Moxifloxacin": {
+                "predict": "S"
+            },
+            "Isoniazid": {
+                "predict": "S"
+            },
+            "Kanamycin": {
+                "predict": "S"
+            },
+            "Ethambutol": {
+                "predict": "S"
+            },
+            "Streptomycin": {
+                "predict": "S"
+            },
+            "Ciprofloxacin": {
+                "predict": "S"
+            },
+            "Pyrazinamide": {
+                "predict": "R",
+                "called_by": {
+                    "pncA_H57D-GTG2289071GTC": {
+                        "variant": null,
+                        "genotype": [
+                            1,
+                            1
+                        ],
+                        "genotype_likelihoods": [
+                            -5562.061052007205,
+                            -99999999,
+                            -89.506424216315
+                        ],
+                        "info": {
+                            "coverage": {
+                                "reference": {
+                                    "percent_coverage": 5.0,
+                                    "median_depth": 0,
+                                    "min_non_zero_depth": 44,
+                                    "kmer_count": 44,
+                                    "klen": 21
+                                },
+                                "alternate": {
+                                    "percent_coverage": 100.0,
+                                    "median_depth": 46,
+                                    "min_non_zero_depth": 44,
+                                    "kmer_count": 837,
+                                    "klen": 19
+                                }
+                            },
+                            "expected_depths": [
+                                56.0
+                            ],
+                            "contamination_depths": [],
+                            "filter": [],
+                            "conf": 5473
+                        },
+                        "_cls": "Call.VariantCall"
+                    }
+                }
+            },
+            "Rifampicin": {
+                "predict": "S"
+            },
+            "Amikacin": {
+                "predict": "S"
+            },
+            "Capreomycin": {
+                "predict": "S"
+            }
+        },
+        "phylogenetics": {
+            "phylo_group": {
+                "Mycobacterium_tuberculosis_complex": {
+                    "percent_coverage": 99.425,
+                    "median_depth": 56.0
+                }
+            },
+            "sub_complex": {
+                "Unknown": {
+                    "percent_coverage": -1,
+                    "median_depth": -1
+                }
+            },
+            "species": {
+                "Mycobacterium_bovis": {
+                    "percent_coverage": 65.402,
+                    "median_depth": 48.0
+                }
+            },
+            "lineage": {
+                "lineage": [
+                    "lineageBovis"
+                ],
+                "calls_summary": {
+                    "lineageBovis": {
+                        "good_nodes": 1,
+                        "tree_depth": 1,
+                        "genotypes": {
+                            "lineageBovis": 1
+                        }
+                    }
+                },
+                "calls": {
+                    "lineageBovis": {
+                        "lineageBovis": {
+                            "C1492605T": {
+                                "variant": "ref-C1492605T?var_name=C1492605T&num_alts=2&ref=NC_000962.3&enum=0&gene=NA&mut=C1492605T",
+                                "genotype": [
+                                    1,
+                                    1
+                                ],
+                                "genotype_likelihoods": [
+                                    -7771.156050282547,
+                                    -99999999,
+                                    -102.4977035173431
+                                ],
+                                "info": {
+                                    "coverage": {
+                                        "reference": {
+                                            "percent_coverage": 60.0,
+                                            "median_depth": 1,
+                                            "min_non_zero_depth": 1,
+                                            "kmer_count": 12,
+                                            "klen": 21
+                                        },
+                                        "alternate": {
+                                            "percent_coverage": 100.0,
+                                            "median_depth": 82,
+                                            "min_non_zero_depth": 75,
+                                            "kmer_count": 1670,
+                                            "klen": 21
+                                        }
+                                    },
+                                    "expected_depths": [
+                                        56.0
+                                    ],
+                                    "contamination_depths": [],
+                                    "filter": [],
+                                    "conf": 7669
+                                },
+                                "_cls": "Call.VariantCall"
+                            }
+                        }
+                    }
+                }
+            }
+        },
+        "kmer": 21,
+        "probe_sets": [
+            "tb-species-170421.fasta.gz",
+            "tb-hunt-probe-set-jan-03-2019.fasta.gz",
+            "tb.lineage.20200930.probes.fa.gz"
+        ],
+        "files": [
+            "ERR125628_1.fastq",
+            "ERR125628_2.fastq"
+        ],
+        "version": {
+            "mykrobe-predictor": "v0.10.0",
+            "mykrobe-atlas": "v0.10.0"
+        },
+        "genotype_model": "kmer_count"
+    }
+}