Mercurial > repos > nml > mykrobe_parser
diff test-data/prediction_2020/output-jsondata.csv @ 6:8e7e5a660942 draft
planemo upload for repository https://github.com/phac-nml/mykrobe-parser commit 077a66175f3666924b42f216bbcb671ee0d026f2
author | nml |
---|---|
date | Fri, 22 Sep 2023 17:24:02 +0000 |
parents | |
children |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/prediction_2020/output-jsondata.csv Fri Sep 22 17:24:02 2023 +0000 @@ -0,0 +1,16 @@ +"file","phylo_group","species","phylo_group_per_covg","species_per_covg","phylo_group_depth","species_depth" +"ERR031480_L6","Mycobacterium_tuberculosis_complex","Mycobacterium_africanum",99.776,89.738,136,167 +"ERR125628_MBOV","Mycobacterium_tuberculosis_complex","Mycobacterium_bovis",99.425,65.402,56,48 +"ERR181314_L9","Mycobacterium_tuberculosis_complex","Mycobacterium_africanum",99.672,75.016,171,90.5 +"ERR234162_L3","Mycobacterium_tuberculosis_complex","Mycobacterium_tuberculosis",99.797,99.33,157,142 +"ERR2659153","Mycobacterium_tuberculosis_complex","Mycobacterium_africanum",99.492,64.411,75,79 +"ERR266106_MCAN","Mycobacterium_tuberculosis_complex","Mycobacterium_tuberculosis",98.352,73.899,100,92 +"ERR2704812_L5","Mycobacterium_tuberculosis_complex","Mycobacterium_africanum",98.467,64.333,332,326 +"ERR3335753_L1","Mycobacterium_tuberculosis_complex","Mycobacterium_tuberculosis",99.69,98.335,236,220 +"ERR4143897_MPIN","Mycobacterium_tuberculosis_complex","Mycobacterium_microti",99.162,52.314,61,55 +"ERR756348_L7","Mycobacterium_tuberculosis_complex","Mycobacterium_tuberculosis",99.033,83.208,173,162 +"ERR841495_L5","Mycobacterium_tuberculosis_complex","Mycobacterium_africanum",99.715,57.895,137,123 +"SRR17089001","Mycobacterium_tuberculosis_complex","Mycobacterium_africanum",99.448,54.809,240,263 +"SRR1710097_L2","Mycobacterium_tuberculosis_complex","Mycobacterium_tuberculosis",99.686,98.909,420,403 +"SRR3500411_MMUN","Mycobacterium_tuberculosis_complex","Mycobacterium_africanum",99.568,62.167,114,94 +"SRR9157804","Mycobacterium_tuberculosis_complex","Mycobacterium_africanum",99.547,55.332,123,111