Mercurial > repos > nml > package_python_3_4_bioext_0_17_3

comparison tool_dependencies.xml @ 1:1ca9f5fd8b65 draft default tip

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planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/packages/package_python_3_4_bioext_0_17_3 commit e2554dc878f6abf1c02ed9e6e4f4440ed32b02aa-dirty
author nml
date Thu, 07 Jul 2016 11:15:41 -0400
parents d71e21675123
children
comparison
equal deleted inserted replaced
0:d71e21675123 1:1ca9f5fd8b65
7 <repository changeset_revision="085a17b297b1" name="package_python_3_4_pysam_0_8_3" owner="nml" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> 7 <repository changeset_revision="085a17b297b1" name="package_python_3_4_pysam_0_8_3" owner="nml" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
8 </package> 8 </package>
9 <package name="numpy" version="1.10.1"> 9 <package name="numpy" version="1.10.1">
10 <repository changeset_revision="f182da2b1d78" name="package_python_3_4_numpy_1_10_1" owner="nml" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> 10 <repository changeset_revision="f182da2b1d78" name="package_python_3_4_numpy_1_10_1" owner="nml" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
11 </package> 11 </package>
12 <package name="scipy" version="0.16">
13 <repository changeset_revision="aaeb6262be47" name="package_python_3_4_scipy_0_16" owner="nml" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
14 </package>
12 <package name="biopython" version="1.66"> 15 <package name="biopython" version="1.66">
13 <repository changeset_revision="cb43753d0467" name="package_python_3_4_biopython_1_66" owner="nml" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> 16 <repository changeset_revision="cb43753d0467" name="package_python_3_4_biopython_1_66" owner="nml" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
17 </package>
18 <package name="six" version="1.10.0">
19 <repository changeset_revision="93036b19115a" name="package_python_3_4_six_1_10_0" owner="nml" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
14 </package> 20 </package>
15 <package name="bioext" version="0.17.3"> 21 <package name="bioext" version="0.17.3">
16 <install version="1.0"> 22 <install version="1.0">
17 <actions> 23 <actions>
18 <action type="download_by_url">https://github.com/veg/BioExt/archive/0.17.3.tar.gz</action> 24 <action type="download_by_url">https://github.com/veg/BioExt/archive/0.17.3.tar.gz</action>
21 <package name="pysam" version="0.8.3" /> 27 <package name="pysam" version="0.8.3" />
22 </repository> 28 </repository>
23 <repository changeset_revision="f182da2b1d78" name="package_python_3_4_numpy_1_10_1" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu"> 29 <repository changeset_revision="f182da2b1d78" name="package_python_3_4_numpy_1_10_1" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu">
24 <package name="numpy" version="1.10.1" /> 30 <package name="numpy" version="1.10.1" />
25 </repository> 31 </repository>
32 <repository changeset_revision="aaeb6262be47" name="package_python_3_4_scipy_0_16" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu">
33 <package name="scipy" version="0.16" />
34 </repository>
26 <repository changeset_revision="cb43753d0467" name="package_python_3_4_biopython_1_66" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu"> 35 <repository changeset_revision="cb43753d0467" name="package_python_3_4_biopython_1_66" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu">
27 <package name="biopython" version="1.66" /> 36 <package name="biopython" version="1.66" />
37 </repository>
38 <repository changeset_revision="93036b19115a" name="package_python_3_4_six_1_10_0" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu">
39 <package name="six" version="1.10.0" />
28 </repository> 40 </repository>
29 <repository changeset_revision="20ecf5cd3c0e" name="package_python_3_4" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> 41 <repository changeset_revision="20ecf5cd3c0e" name="package_python_3_4" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
30 <package name="python" version="3.4" /> 42 <package name="python" version="3.4" />
31 </repository> 43 </repository>
32 </action> 44 </action>
40 <action type="set_environment"> 52 <action type="set_environment">
41 <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable> 53 <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable>
42 <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable> 54 <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
43 <environment_variable action="append_to" name="PYTHONPATH">$ENV[PYTHONPATH_PYSAM]</environment_variable> 55 <environment_variable action="append_to" name="PYTHONPATH">$ENV[PYTHONPATH_PYSAM]</environment_variable>
44 <environment_variable action="append_to" name="PYTHONPATH">$ENV[PYTHONPATH_NUMPY]</environment_variable> 56 <environment_variable action="append_to" name="PYTHONPATH">$ENV[PYTHONPATH_NUMPY]</environment_variable>
57 <environment_variable action="append_to" name="PYTHONPATH">$ENV[PYTHONPATH_SCIPY]</environment_variable>
45 <environment_variable action="append_to" name="PYTHONPATH">$ENV[PYTHONPATH_BIOPYTHON]</environment_variable> 58 <environment_variable action="append_to" name="PYTHONPATH">$ENV[PYTHONPATH_BIOPYTHON]</environment_variable>
59 <environment_variable action="append_to" name="PYTHONPATH">$ENV[PYTHONPATH_SIX]</environment_variable>
46 <environment_variable action="prepend_to" name="PATH">$ENV[PATH_NUMPY]</environment_variable> 60 <environment_variable action="prepend_to" name="PATH">$ENV[PATH_NUMPY]</environment_variable>
61 <environment_variable action="prepend_to" name="PATH">$ENV[PATH_SCIPY]</environment_variable>
47 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> 62 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
48 <environment_variable action="set_to" name="PYTHONPATH_BIOEXT">$INSTALL_DIR/lib/python</environment_variable> 63 <environment_variable action="set_to" name="PYTHONPATH_BIOEXT">$INSTALL_DIR/lib/python</environment_variable>
49 <environment_variable action="set_to" name="PATH_BIOEXT">$INSTALL_DIR/bin</environment_variable> 64 <environment_variable action="set_to" name="PATH_BIOEXT">$INSTALL_DIR/bin</environment_variable>
50 </action> 65 </action>
51 </actions> 66 </actions>