Mercurial > repos > nml > package_python_3_4_hivclustering_1_2_3

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planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/packages/package_python_3_4_hivclustering_1_2_3 commit e2554dc878f6abf1c02ed9e6e4f4440ed32b02aa-dirty
author nml
date Thu, 07 Jul 2016 13:34:08 -0400
parents 5b977873cc87
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="python" version="3.4">
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4 <repository changeset_revision="20ecf5cd3c0e" name="package_python_3_4" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
594976628691 planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/packages/package_python_3_4_hivclustering_1_2_3 commit e2554dc878f6abf1c02ed9e6e4f4440ed32b02aa
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5 </package>
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6 <package name="bioext" version="0.17.3">
1
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7 <repository changeset_revision="1ca9f5fd8b65" name="package_python_3_4_bioext_0_17_3" owner="nml" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
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8 </package>
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9 <package name="fakemp" version="0.9.1">
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10 <repository changeset_revision="13da2754601c" name="package_python_3_4_fakemp_0_9_1" owner="nml" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
eda1cbde6572 planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/packages/package_python_3_4_hivclustering_1_2_3 commit e2554dc878f6abf1c02ed9e6e4f4440ed32b02aa-dirty
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11 </package>
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12 <package name="hyphy-python" version="0.1.3">
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13 <repository changeset_revision="5c14a49141f0" name="package_python_3_4_hyphy_python_0_1_3" owner="nml" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
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14 </package>
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15 <package name="hppy" version="0.9.6">
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16 <repository changeset_revision="46decde5b780" name="package_python_3_4_hppy_0_9_6" owner="nml" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
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17 </package>
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18 <package name="cython" version="0.23.4">
2
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19 <repository changeset_revision="52c11d398790" name="package_python_3_4_cython_0_23_4" owner="nml" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
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20 </package>
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21 <package name="hivclustering" version="1.2.3">
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22 <install version="1.0">
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23 <actions>
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24 <action type="download_by_url">https://github.com/veg/hivclustering/archive/1.2.3.tar.gz</action>
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25 <action type="set_environment_for_install">
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26 <repository changeset_revision="52c11d398790" name="package_python_3_4_cython_0_23_4" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu">
0
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27 <package name="cython" version="0.23.4" />
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28 </repository>
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29 <repository changeset_revision="5c14a49141f0" name="package_python_3_4_hyphy_python_0_1_3" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu">
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30 <package name="hyphy-python" version="0.1.3" />
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31 </repository>
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32 <repository changeset_revision="46decde5b780" name="package_python_3_4_hppy_0_9_6" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu">
0
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33 <package name="hppy" version="0.9.6" />
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34 </repository>
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35 <repository changeset_revision="1ca9f5fd8b65" name="package_python_3_4_bioext_0_17_3" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu">
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36 <package name="bioext" version="0.17.3" />
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37 </repository>
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38 <repository changeset_revision="13da2754601c" name="package_python_3_4_fakemp_0_9_1" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu">
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39 <package name="fakemp" version="0.9.1" />
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40 </repository>
0
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41 <repository changeset_revision="20ecf5cd3c0e" name="package_python_3_4" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
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42 <package name="python" version="3.4" />
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43 </repository>
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44 </action>
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45 <action type="make_directory">$INSTALL_DIR/lib/python</action>
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46 <action type="shell_command">
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47 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp;
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48 python3 setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin
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49 </action>
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50 <action type="set_environment">
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51 <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
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52 <environment_variable action="append_to" name="PYTHONPATH">$ENV[PYTHONPATH_BIOEXT]</environment_variable>
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53 <environment_variable action="append_to" name="PYTHONPATH">$ENV[PYTHONPATH_FAKEMP]</environment_variable>
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54 <environment_variable action="append_to" name="PYTHONPATH">$ENV[PYTHONPATH_HYPHY_PYTHON]</environment_variable>
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55 <environment_variable action="append_to" name="PYTHONPATH">$ENV[PYTHONPATH_HPPY]</environment_variable>
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56 <environment_variable action="append_to" name="PYTHONPATH">$ENV[PYTHONPATH_CYTHON]</environment_variable>
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57 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
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58 <environment_variable action="set_to" name="PATH_HIVCLUSTERING">$INSTALL_DIR/bin</environment_variable>
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59 <environment_variable action="set_to" name="PYTHONPATH_HIVCLUSTERING">$INSTALL_DIR/lib/python</environment_variable>
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60 </action>
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61 </actions>
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62 </install>
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63 <readme>hivclustering from https://github.com/veg/hivclustering</readme>
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64 </package>
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65 </tool_dependency>