Mercurial > repos > nml > package_python_3_4_hivclustering_1_2_3

comparison tool_dependencies.xml @ 0:594976628691 draft

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planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/packages/package_python_3_4_hivclustering_1_2_3 commit e2554dc878f6abf1c02ed9e6e4f4440ed32b02aa
author nml
date Thu, 07 Jul 2016 09:58:04 -0400
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children 5b977873cc87
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-1:000000000000 0:594976628691
1 <?xml version="1.0"?>
2 <tool_dependency>
3 <package name="python" version="3.4">
4 <repository changeset_revision="20ecf5cd3c0e" name="package_python_3_4" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
5 </package>
6 <package name="bioext" version="0.17.3">
7 <repository changeset_revision="d71e21675123" name="package_python_3_4_bioext_0_17_3" owner="nml" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
8 </package>
9 <package name="hyphy" version="2.2.6">
10 <repository changeset_revision="6e10967fdc7a" name="package_python_3_4_hyphy_2_2_6" owner="nml" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
11 </package>
12 <package name="hppy" version="0.9.6">
13 <repository changeset_revision="ded93000c5da" name="package_python_3_4_hppy_0_9_6" owner="nml" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
14 </package>
15 <package name="cython" version="0.23.4">
16 <repository changeset_revision="c065e365766c" name="package_python_3_4_cython_0_23_4" owner="nml" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
17 </package>
18 <package name="hivclustering" version="1.2.3">
19 <install version="1.0">
20 <actions>
21 <action type="download_by_url">https://github.com/veg/hivclustering/archive/1.2.3.tar.gz</action>
22 <action type="set_environment_for_install">
23 <repository changeset_revision="c065e365766c" name="package_python_3_4_cython_0_23_4" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu">
24 <package name="cython" version="0.23.4" />
25 </repository>
26 <repository changeset_revision="6e10967fdc7a" name="package_python_3_4_hyphy_2_2_6" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu">
27 <package name="hyphy" version="2.2.6" />
28 </repository>
29 <repository changeset_revision="ded93000c5da" name="package_python_3_4_hppy_0_9_6" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu">
30 <package name="hppy" version="0.9.6" />
31 </repository>
32 <repository changeset_revision="d71e21675123" name="package_python_3_4_bioext_0_17_3" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu">
33 <package name="bioext" version="0.17.3" />
34 </repository>
35 <repository changeset_revision="20ecf5cd3c0e" name="package_python_3_4" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
36 <package name="python" version="3.4" />
37 </repository>
38 </action>
39 <action type="make_directory">$INSTALL_DIR/lib/python</action>
40 <action type="shell_command">
41 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp;
42 python3 setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin
43 </action>
44 <action type="set_environment">
45 <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
46 <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable>
47 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
48 <environment_variable action="set_to" name="PATH_HIVCLUSTERING">$INSTALL_DIR/bin</environment_variable>
49 </action>
50 </actions>
51 </install>
52 <readme>hivclustering from https://github.com/veg/hivclustering</readme>
53 </package>
54 </tool_dependency>