# HG changeset patch
# User nml
# Date 1467899884 14400
# Node ID 594976628691ed8bcb264df0e6bf4674ec23f16d

planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/packages/package_python_3_4_hivclustering_1_2_3 commit e2554dc878f6abf1c02ed9e6e4f4440ed32b02aa

diff -r 000000000000 -r 594976628691 tool_dependencies.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Thu Jul 07 09:58:04 2016 -0400
@@ -0,0 +1,54 @@
+<?xml version="1.0"?>
+<tool_dependency>
+        <package name="python" version="3.4">
+          <repository changeset_revision="20ecf5cd3c0e" name="package_python_3_4" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
+        </package>
+        <package name="bioext" version="0.17.3">
+          <repository changeset_revision="d71e21675123" name="package_python_3_4_bioext_0_17_3" owner="nml" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
+        </package>
+        <package name="hyphy" version="2.2.6">
+          <repository changeset_revision="6e10967fdc7a" name="package_python_3_4_hyphy_2_2_6" owner="nml" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
+        </package>
+        <package name="hppy" version="0.9.6">
+          <repository changeset_revision="ded93000c5da" name="package_python_3_4_hppy_0_9_6" owner="nml" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
+        </package>
+        <package name="cython" version="0.23.4">
+          <repository changeset_revision="c065e365766c" name="package_python_3_4_cython_0_23_4" owner="nml" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
+        </package>
+        <package name="hivclustering" version="1.2.3">
+            <install version="1.0">
+                <actions>
+                    <action type="download_by_url">https://github.com/veg/hivclustering/archive/1.2.3.tar.gz</action>
+                    <action type="set_environment_for_install">
+                        <repository changeset_revision="c065e365766c" name="package_python_3_4_cython_0_23_4" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu">
+                            <package name="cython" version="0.23.4" />
+                        </repository>
+                        <repository changeset_revision="6e10967fdc7a" name="package_python_3_4_hyphy_2_2_6" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu">
+                            <package name="hyphy" version="2.2.6" />
+                        </repository>
+                        <repository changeset_revision="ded93000c5da" name="package_python_3_4_hppy_0_9_6" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu">
+                            <package name="hppy" version="0.9.6" />
+                        </repository>
+                        <repository changeset_revision="d71e21675123" name="package_python_3_4_bioext_0_17_3" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu">
+                            <package name="bioext" version="0.17.3" />
+                        </repository>
+                        <repository changeset_revision="20ecf5cd3c0e" name="package_python_3_4" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
+                            <package name="python" version="3.4" />
+                        </repository>
+                    </action>
+                    <action type="make_directory">$INSTALL_DIR/lib/python</action>
+                    <action type="shell_command">
+                      export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp;
+                      python3 setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin
+                    </action>
+                    <action type="set_environment">
+                      <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
+                      <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable>
+                      <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
+                      <environment_variable action="set_to" name="PATH_HIVCLUSTERING">$INSTALL_DIR/bin</environment_variable>
+                    </action>
+                </actions>
+            </install>
+            <readme>hivclustering from https://github.com/veg/hivclustering</readme>
+        </package>
+</tool_dependency>