Mercurial > repos > nml > package_python_3_4_hivclustering_1_2_3
changeset 2:eda1cbde6572 draft default tip
planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/packages/package_python_3_4_hivclustering_1_2_3 commit e2554dc878f6abf1c02ed9e6e4f4440ed32b02aa-dirty
| author | nml |
|---|---|
| date | Thu, 07 Jul 2016 13:34:08 -0400 |
| parents | 5b977873cc87 |
| children | |
| files | tool_dependencies.xml |
| diffstat | 1 files changed, 20 insertions(+), 9 deletions(-) [+] |
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--- a/tool_dependencies.xml Thu Jul 07 11:19:37 2016 -0400 +++ b/tool_dependencies.xml Thu Jul 07 13:34:08 2016 -0400 @@ -6,32 +6,38 @@ <package name="bioext" version="0.17.3"> <repository changeset_revision="1ca9f5fd8b65" name="package_python_3_4_bioext_0_17_3" owner="nml" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> </package> - <package name="hyphy" version="2.2.6"> - <repository changeset_revision="6e10967fdc7a" name="package_python_3_4_hyphy_2_2_6" owner="nml" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> + <package name="fakemp" version="0.9.1"> + <repository changeset_revision="13da2754601c" name="package_python_3_4_fakemp_0_9_1" owner="nml" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> + </package> + <package name="hyphy-python" version="0.1.3"> + <repository changeset_revision="5c14a49141f0" name="package_python_3_4_hyphy_python_0_1_3" owner="nml" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> </package> <package name="hppy" version="0.9.6"> - <repository changeset_revision="ded93000c5da" name="package_python_3_4_hppy_0_9_6" owner="nml" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> + <repository changeset_revision="46decde5b780" name="package_python_3_4_hppy_0_9_6" owner="nml" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> </package> <package name="cython" version="0.23.4"> - <repository changeset_revision="c065e365766c" name="package_python_3_4_cython_0_23_4" owner="nml" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> + <repository changeset_revision="52c11d398790" name="package_python_3_4_cython_0_23_4" owner="nml" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> </package> <package name="hivclustering" version="1.2.3"> <install version="1.0"> <actions> <action type="download_by_url">https://github.com/veg/hivclustering/archive/1.2.3.tar.gz</action> <action type="set_environment_for_install"> - <repository changeset_revision="c065e365766c" name="package_python_3_4_cython_0_23_4" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu"> + <repository changeset_revision="52c11d398790" name="package_python_3_4_cython_0_23_4" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu"> <package name="cython" version="0.23.4" /> </repository> - <repository changeset_revision="6e10967fdc7a" name="package_python_3_4_hyphy_2_2_6" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu"> - <package name="hyphy" version="2.2.6" /> + <repository changeset_revision="5c14a49141f0" name="package_python_3_4_hyphy_python_0_1_3" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu"> + <package name="hyphy-python" version="0.1.3" /> </repository> - <repository changeset_revision="ded93000c5da" name="package_python_3_4_hppy_0_9_6" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu"> + <repository changeset_revision="46decde5b780" name="package_python_3_4_hppy_0_9_6" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu"> <package name="hppy" version="0.9.6" /> </repository> <repository changeset_revision="1ca9f5fd8b65" name="package_python_3_4_bioext_0_17_3" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu"> <package name="bioext" version="0.17.3" /> </repository> + <repository changeset_revision="13da2754601c" name="package_python_3_4_fakemp_0_9_1" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu"> + <package name="fakemp" version="0.9.1" /> + </repository> <repository changeset_revision="20ecf5cd3c0e" name="package_python_3_4" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> <package name="python" version="3.4" /> </repository> @@ -43,9 +49,14 @@ </action> <action type="set_environment"> <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable> - <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable> + <environment_variable action="append_to" name="PYTHONPATH">$ENV[PYTHONPATH_BIOEXT]</environment_variable> + <environment_variable action="append_to" name="PYTHONPATH">$ENV[PYTHONPATH_FAKEMP]</environment_variable> + <environment_variable action="append_to" name="PYTHONPATH">$ENV[PYTHONPATH_HYPHY_PYTHON]</environment_variable> + <environment_variable action="append_to" name="PYTHONPATH">$ENV[PYTHONPATH_HPPY]</environment_variable> + <environment_variable action="append_to" name="PYTHONPATH">$ENV[PYTHONPATH_CYTHON]</environment_variable> <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> <environment_variable action="set_to" name="PATH_HIVCLUSTERING">$INSTALL_DIR/bin</environment_variable> + <environment_variable action="set_to" name="PYTHONPATH_HIVCLUSTERING">$INSTALL_DIR/lib/python</environment_variable> </action> </actions> </install>