Mercurial > repos > nml > package_python_3_4_hyphy_2_2_6

changeset 0:6e10967fdc7a draft default tip

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planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/packages/package_python_3_4_hyphy_2_2_6 commit e2554dc878f6abf1c02ed9e6e4f4440ed32b02aa
author nml
date Thu, 07 Jul 2016 09:56:00 -0400
parents
children
files tool_dependencies.xml
diffstat 1 files changed, 33 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Thu Jul 07 09:56:00 2016 -0400
@@ -0,0 +1,33 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="python" version="3.4">
+      <repository changeset_revision="20ecf5cd3c0e" name="package_python_3_4" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="cmake" version="3.2.3">
+      <repository changeset_revision="1aea698a1c63" name="package_cmake_3_2_3" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="hyphy" version="2.2.6">
+        <install version="1.0">
+          <actions>
+              <action type="download_by_url">https://github.com/veg/hyphy/archive/2.2.6.tar.gz</action>
+              <action type="set_environment_for_install">
+                  <repository changeset_revision="1aea698a1c63" name="package_cmake_3_2_3" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
+                      <package name="cmake" version="3.2.3" />
+                  </repository>
+              </action>
+              <action type="shell_command">cmake -DCMAKE_INSTALL_PREFIX=$INSTALL_DIR -DINSTALL_PREFIX=$INSTALL_DIR ./</action>
+              <action type="shell_command">make MP2</action>
+              <action type="make_install" />
+              <action type="set_environment">
+                <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/lib</environment_variable>
+                <environment_variable action="append_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
+              </action>
+          </actions>
+        </install>
+        <readme>
+This installs HyPhy 2.2.6.
+
+See usage instructions here: http://hyphy.org/w/index.php/Main_Page
+        </readme>
+    </package>
+</tool_dependency>