Mercurial > repos > nml > package_python_3_4_numpy_1_10_1
comparison tool_dependencies.xml @ 0:f182da2b1d78 draft default tip
planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/packages/package_python_3_4_numpy_1_10_1 commit e2554dc878f6abf1c02ed9e6e4f4440ed32b02aa
| author | nml |
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| date | Thu, 07 Jul 2016 09:56:22 -0400 |
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| children |
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| -1:000000000000 | 0:f182da2b1d78 |
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| 1 <?xml version="1.0"?> | |
| 2 <tool_dependency> | |
| 3 <package name="atlas" version="3.10.2"> | |
| 4 <repository changeset_revision="98c017ec230d" name="package_atlas_3_10" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> | |
| 5 </package> | |
| 6 <package name="python" version="3.4"> | |
| 7 <repository changeset_revision="20ecf5cd3c0e" name="package_python_3_4" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> | |
| 8 </package> | |
| 9 <package name="numpy" version="1.10.1"> | |
| 10 <install version="1.0"> | |
| 11 <actions> | |
| 12 <action type="download_by_url">http://sourceforge.net/projects/numpy/files/NumPy/1.10.1/numpy-1.10.1.tar.gz</action> | |
| 13 <action type="set_environment_for_install"> | |
| 14 <repository changeset_revision="98c017ec230d" name="package_atlas_3_10" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> | |
| 15 <package name="atlas" version="3.10.2" /> | |
| 16 </repository> | |
| 17 <repository changeset_revision="20ecf5cd3c0e" name="package_python_3_4" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> | |
| 18 <package name="python" version="3.4" /> | |
| 19 </repository> | |
| 20 </action> | |
| 21 <action type="make_directory">$INSTALL_DIR/bin</action> | |
| 22 <action type="make_directory">$INSTALL_DIR/lib/python</action> | |
| 23 <action type="shell_command">python3 setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin</action> | |
| 24 <action type="set_environment"> | |
| 25 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable> | |
| 26 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> | |
| 27 <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$ENV[ATLAS_LIB_DIR]</environment_variable> | |
| 28 <environment_variable action="set_to" name="PYTHONPATH_NUMPY">$INSTALL_DIR/lib/python</environment_variable> | |
| 29 <environment_variable action="set_to" name="PATH_NUMPY">$INSTALL_DIR/bin</environment_variable> | |
| 30 <environment_variable action="set_to" name="NUMPY_ROOT_DIR">$INSTALL_DIR</environment_variable> | |
| 31 </action> | |
| 32 </actions> | |
| 33 </install> | |
| 34 <readme>Compiling numpy requires a C and Fortran compiler (typically gcc and gfortran). The PYTHONPATH for numpy can be accessed through PYTHONPATH_NUMPY and the binaries with PATH_NUMPY.</readme> | |
| 35 </package> | |
| 36 </tool_dependency> |