Mercurial > repos > nml > package_spades_3_6_1

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planemo upload commit 431df7f200e95da5ad815c34a13af84af5bd8f2f
author nml
date Fri, 20 Nov 2015 10:36:54 -0500
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1 <?xml version="1.0"?>
2 <tool_dependency>
3 <package name="spades" version="3.6.1">
4 <install version="1.0">
5 <actions>
6 <action type="download_by_url">http://spades.bioinf.spbau.ru/release3.6.1/SPAdes-3.6.1-Linux.tar.gz</action>
7 <!-- Copying the whole bin folder -->
8 <action type="make_directory">$INSTALL_DIR/bin</action>
9 <action type="make_directory">$INSTALL_DIR/share</action>
10 <action type="move_directory_files">
11 <source_directory>bin</source_directory>
12 <destination_directory>$INSTALL_DIR/bin</destination_directory>
13 </action>
14 <action type="move_directory_files">
15 <source_directory>share</source_directory>
16 <destination_directory>$INSTALL_DIR/share</destination_directory>
17 </action>
18 <action type="set_environment">
19 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
20 </action>
21 </actions>
22 </install>
23 <readme>
24 This installs SPAdes 3.6.1.
25
26 See manual here http://spades.bioinf.spbau.ru/release3.6.1/manual.html
27 See also here http://bioinf.spbau.ru/en/spades
28 Author : Philip Mabon
29 Original author : Lionel Guy
30 </readme>
31 </package>
32 </tool_dependency>
33