Mercurial > repos > nml > package_spades_3_6_1

changeset 0:12d407123e94 draft default tip

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planemo upload commit 431df7f200e95da5ad815c34a13af84af5bd8f2f
author nml
date Fri, 20 Nov 2015 10:36:54 -0500
parents
children
files tool_dependencies.xml
diffstat 1 files changed, 33 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Fri Nov 20 10:36:54 2015 -0500
@@ -0,0 +1,33 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="spades" version="3.6.1">
+        <install version="1.0">
+            <actions>
+                <action type="download_by_url">http://spades.bioinf.spbau.ru/release3.6.1/SPAdes-3.6.1-Linux.tar.gz</action>
+                <!-- Copying the whole bin folder -->
+		<action type="make_directory">$INSTALL_DIR/bin</action>
+		<action type="make_directory">$INSTALL_DIR/share</action>
+		<action type="move_directory_files">
+		  <source_directory>bin</source_directory>
+		  <destination_directory>$INSTALL_DIR/bin</destination_directory>
+		</action>
+                <action type="move_directory_files">
+		  <source_directory>share</source_directory>
+		  <destination_directory>$INSTALL_DIR/share</destination_directory>
+		</action>
+                <action type="set_environment">
+                <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>
+This installs SPAdes 3.6.1.
+
+See manual here http://spades.bioinf.spbau.ru/release3.6.1/manual.html
+See also here http://bioinf.spbau.ru/en/spades
+Author : Philip Mabon
+Original author : Lionel Guy
+        </readme>
+    </package>
+</tool_dependency>
+