Mercurial > repos > nml > package_spades_3_9_0

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planemo upload commit 4f3721ca835a97f76cb7557d742651c0d7f101a0
author nml
date Mon, 08 Aug 2016 12:51:10 -0400
parents
children
files tool_dependencies.xml
diffstat 1 files changed, 34 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Mon Aug 08 12:51:10 2016 -0400
@@ -0,0 +1,34 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="spades" version="3.9.0">
+        <install version="1.0">
+            <actions>
+                <action type="download_by_url">http://spades.bioinf.spbau.ru/release3.9.0/SPAdes-3.9.0-Linux.tar.gz</action>
+                <!-- Copying the whole bin folder -->
+		<action type="make_directory">$INSTALL_DIR/bin</action>
+		<action type="make_directory">$INSTALL_DIR/share</action>
+		<action type="move_directory_files">
+		  <source_directory>bin</source_directory>
+		  <destination_directory>$INSTALL_DIR/bin</destination_directory>
+		</action>
+                <action type="move_directory_files">
+		  <source_directory>share</source_directory>
+		  <destination_directory>$INSTALL_DIR/share</destination_directory>
+		</action>
+                <action type="set_environment">
+                <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>
+This installs SPAdes 3.9.
+
+See manual here http://spades.bioinf.spbau.ru/release3.9.0/manual.html
+See also here http://bioinf.spbau.ru/en/spades
+
+Author : Philip Mabon
+Original author : Lionel Guy
+        </readme>
+    </package>
+</tool_dependency>
+