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annotate test-data/lineage_report.tsv @ 2:c897e502c084 draft

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"planemo upload for repository https://github.com/hCoV-2019/pangolin commit b53db6d0612f94e5c9365c9ecd267eeff396097f"
author nml
date Mon, 04 May 2020 16:40:54 -0400
parents b91b3923656e
children 24c005390360
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b91b3923656e "planemo upload for repository https://github.com/hCoV-2019/pangolin commit 216d09e3d63a6ab4245df78c111ca97d4e0b14de"
nml
parents:
diff changeset
1 taxon lineage SH-alrt UFbootstrap lineages_version status note
b91b3923656e "planemo upload for repository https://github.com/hCoV-2019/pangolin commit 216d09e3d63a6ab4245df78c111ca97d4e0b14de"
nml
parents:
diff changeset
2 Japan/DP0779/2020|EPI_ISL_416626||Japan|unknown||2020-02-17 B 100 100 2020-04-27 passed_qc
b91b3923656e "planemo upload for repository https://github.com/hCoV-2019/pangolin commit 216d09e3d63a6ab4245df78c111ca97d4e0b14de"
nml
parents:
diff changeset
3 USA/NY-NYUMC7/2020|EPI_ISL_418192||USA|New_York|Manhattan|2020-03-16 B.1 100 100 2020-04-27 passed_qc
b91b3923656e "planemo upload for repository https://github.com/hCoV-2019/pangolin commit 216d09e3d63a6ab4245df78c111ca97d4e0b14de"
nml
parents:
diff changeset
4 This_seq_has_no_seq None 0 0 2020-04-27 fail seq_len:0
b91b3923656e "planemo upload for repository https://github.com/hCoV-2019/pangolin commit 216d09e3d63a6ab4245df78c111ca97d4e0b14de"
nml
parents:
diff changeset
5 This_seq_is_too_short None 0 0 2020-04-27 fail seq_len:2997
b91b3923656e "planemo upload for repository https://github.com/hCoV-2019/pangolin commit 216d09e3d63a6ab4245df78c111ca97d4e0b14de"
nml
parents:
diff changeset
6 This_seq_has_lots_of_Ns None 0 0 2020-04-27 fail N_content:0.98
b91b3923656e "planemo upload for repository https://github.com/hCoV-2019/pangolin commit 216d09e3d63a6ab4245df78c111ca97d4e0b14de"
nml
parents:
diff changeset
7 This_seq_is_literally_just_N None 0 0 2020-04-27 fail N_content:1.0