Mercurial > repos > nml > pangolin

comparison pangolin.xml @ 3:24c005390360 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/hCoV-2019/pangolin commit 8a1337fc6ef2b8b3f2f82ebdf3ee8dbb6e3ff1ed"
author nml
date Mon, 11 May 2020 19:23:31 -0400
parents c897e502c084
children 35566aadcfc7
comparison
equal deleted inserted replaced
2:c897e502c084 3:24c005390360
39 </collection> 39 </collection>
40 </outputs> 40 </outputs>
41 <tests> 41 <tests>
42 <test> 42 <test>
43 <param name="input1" value="test_seqs.fasta" /> 43 <param name="input1" value="test_seqs.fasta" />
44 <output name="lineage_report" value="lineage_report.tsv" /> 44 <output name="lineage_report" >
45 <assert_contents>
46 <has_text text="Japan/DP0779/2020|EPI_ISL_416626||Japan|unknown||2020-02-17" />
47 <has_text text="USA/NY-NYUMC7/2020|EPI_ISL_418192||USA|New_York|Manhattan|2020-03-16" />
48 <has_text text="This_seq_is_too_short" />
49 <has_text text="lineage" />
50 </assert_contents>
51 </output>
45 </test> 52 </test>
46 <test> 53 <test>
47 <param name="input1" value="test_seqs.fasta" /> 54 <param name="input1" value="test_seqs.fasta" />
48 <section name="additional"> 55 <section name="additional">
49 <param name="write_tree" value="true" /> 56 <param name="write_tree" value="true" />
50 </section> 57 </section>
51 <output name="lineage_report" value="lineage_report.tsv" /> 58 <output name="lineage_report" >
59 <assert_contents>
60 <has_text text="Japan/DP0779/2020|EPI_ISL_416626||Japan|unknown||2020-02-17" />
61 <has_text text="USA/NY-NYUMC7/2020|EPI_ISL_418192||USA|New_York|Manhattan|2020-03-16" />
62 <has_text text="This_seq_is_too_short" />
63 <has_text text="lineage" />
64 </assert_contents>
65 </output>
52 <output_collection name="pangolin_trees" type="list"> 66 <output_collection name="pangolin_trees" type="list">
53 <element name="USA_NY-NYUMC7_2020_EPI_ISL_418192__USA_New_York_Manhattan_2020-03-16" ftype="iqtree"> 67 <element name="USA_NY-NYUMC7_2020_EPI_ISL_418192__USA_New_York_Manhattan_2020-03-16" ftype="iqtree">
54 <assert_contents> 68 <assert_contents>
55 <has_text text="USA/NY-NYUMC7/2020|EPI_ISL_418192||USA|New_York|Manhattan|2020-03-16" /> 69 <has_text text="USA/NY-NYUMC7/2020|EPI_ISL_418192||USA|New_York|Manhattan|2020-03-16" />
56 </assert_contents> 70 </assert_contents>