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comparison pangolin.xml @ 4:35566aadcfc7 draft

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"planemo upload for repository https://github.com/hCoV-2019/pangolin commit 20e8d283d6080a62d53b941f130552eaf2e69db1"
author nml
date Thu, 14 May 2020 20:53:17 -0400
parents 24c005390360
children e2497d4385e2
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3:24c005390360 4:35566aadcfc7
86 To do this, Pangolin employs the use of external programs including: `iqtree <http://www.iqtree.org/#download>`_, `mafft <https://mafft.cbrc.jp/alignment/software/>`_, 86 To do this, Pangolin employs the use of external programs including: `iqtree <http://www.iqtree.org/#download>`_, `mafft <https://mafft.cbrc.jp/alignment/software/>`_,
87 and `snakemake <https://snakemake.readthedocs.io/en/stable/index.html>`_. 87 and `snakemake <https://snakemake.readthedocs.io/en/stable/index.html>`_.
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89 More information can be obtained from the authors github site: https://github.com/hCoV-2019/pangolin 89 More information can be obtained from the authors github site: https://github.com/hCoV-2019/pangolin
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91 You may also wish to visit the authors website at https://pangolin.cog-uk.io/
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91 -------------- 93 --------------
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93 **Input** - Multi sequence fasta file 95 **Input** - Multi sequence fasta file or individual fasta files
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95 97
96 **Output** - lineage report: 98 **Output** - lineage report:
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98 +---------+---------+------+-------------+------------------+-----------+-----------+ 100 +---------+---------+------+-------------+------------------+-----------+-----------+