Mercurial > repos > nml > positions2snv_alignment

comparison positions2snv_alignment.xml @ 1:1cf81ca17e9d draft default tip

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"planemo upload for repository https://github.com/phac-nml/snvphyl-galaxy commit 57067916cb7b9c5b65c1da59d4bbb846c3e3af2f"
author nml
date Tue, 23 Jun 2020 10:26:59 -0400
parents e2cec726fa79
children
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0:e2cec726fa79 1:1cf81ca17e9d
1 <tool id="positions2snv_alignment" name="Positions to SNV alignment" version ="1.8.2"> 1 <tool id="positions2snv_alignment" name="Positions to SNV alignment" version ="@VERSION@+galaxy1">
2 <description>Create a SNV-only alignment from the SNVPhyl positions table.</description> 2 <description>Create a SNV-only alignment from the SNVPhyl positions table.</description>
3 <requirements> 3 <macros>
4 <requirement type="package" version="1.8.2">snvphyl-tools</requirement> 4 <import>macros.xml</import>
5 </requirements> 5 </macros>
6 <expand macro="requirements"/>
6 <command detect_errors="exit_code"><![CDATA[ 7 <command detect_errors="exit_code"><![CDATA[
7 positions2snv_alignment.pl -i $snv_table -o $output -f $out_format $keep_all 8 positions2snv_alignment.pl -i $snv_table -o $output -f $out_format $keep_all
8 #if $reference_name: 9 #if $reference_name:
9 --reference-name $reference_name 10 --reference-name $reference_name
10 #end if 11 #end if
68 ============ 69 ============
69 70
70 Creates a SNV-only alignment from the SNVPhyl SNV positions table. 71 Creates a SNV-only alignment from the SNVPhyl SNV positions table.
71 72
72 </help> 73 </help>
73 74 <expand macro="citations"/>
74 <citations>
75 </citations>
76 </tool> 75 </tool>