Mercurial > repos > nml > positions2snv_invariant_alignment
comparison positions2snv_invariant_alignment.xml @ 1:5dc704146cc6 draft default tip
"planemo upload for repository https://github.com/phac-nml/snvphyl-galaxy commit 57067916cb7b9c5b65c1da59d4bbb846c3e3af2f"
author | nml |
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date | Tue, 23 Jun 2020 10:27:17 -0400 |
parents | bf542eece94a |
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0:bf542eece94a | 1:5dc704146cc6 |
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1 <tool id="positions2snv_invariant_alignment" name="Positions to SNV invariant alignment" version ="1.8.2"> | 1 <tool id="positions2snv_invariant_alignment" name="Positions to SNV invariant alignment" version ="@VERSION@+galaxy1"> |
2 <description>Create a SNV and non-variant alignment from the SNVPhyl positions table and a reference genome.</description> | 2 <description>Create a SNV and non-variant alignment from the SNVPhyl positions table and a reference genome.</description> |
3 <requirements> | 3 <macros> |
4 <requirement type="package" version="1.8.2">snvphyl-tools</requirement> | 4 <import>macros.xml</import> |
5 </requirements> | 5 </macros> |
6 <expand macro="requirements"/> | |
6 <command detect_errors="exit_code"><![CDATA[ | 7 <command detect_errors="exit_code"><![CDATA[ |
7 positions2snv_invariant_alignment.pl -i $snv_table --reference-file $reference_genome -o outputs -f $out_format $keep_all $merge_alignment | 8 positions2snv_invariant_alignment.pl -i $snv_table --reference-file $reference_genome -o outputs -f $out_format $keep_all $merge_alignment |
8 ]]></command> | 9 ]]></command> |
9 <inputs> | 10 <inputs> |
10 <param name="snv_table" type="data" label="SNV table" format="tabular"/> | 11 <param name="snv_table" type="data" label="SNV table" format="tabular"/> |
83 ============ | 84 ============ |
84 | 85 |
85 Creates a SNV and non-variant alignment from the SNVPhyl SNV positions table and a reference genome. | 86 Creates a SNV and non-variant alignment from the SNVPhyl SNV positions table and a reference genome. |
86 | 87 |
87 </help> | 88 </help> |
88 | 89 <expand macro="citations"/> |
89 <citations> | |
90 </citations> | |
91 </tool> | 90 </tool> |