Mercurial > repos > nml > positions2snv_invariant_alignment

comparison positions2snv_invariant_alignment.xml @ 1:5dc704146cc6 draft default tip

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"planemo upload for repository https://github.com/phac-nml/snvphyl-galaxy commit 57067916cb7b9c5b65c1da59d4bbb846c3e3af2f"
author nml
date Tue, 23 Jun 2020 10:27:17 -0400
parents bf542eece94a
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0:bf542eece94a 1:5dc704146cc6
1 <tool id="positions2snv_invariant_alignment" name="Positions to SNV invariant alignment" version ="1.8.2"> 1 <tool id="positions2snv_invariant_alignment" name="Positions to SNV invariant alignment" version ="@VERSION@+galaxy1">
2 <description>Create a SNV and non-variant alignment from the SNVPhyl positions table and a reference genome.</description> 2 <description>Create a SNV and non-variant alignment from the SNVPhyl positions table and a reference genome.</description>
3 <requirements> 3 <macros>
4 <requirement type="package" version="1.8.2">snvphyl-tools</requirement> 4 <import>macros.xml</import>
5 </requirements> 5 </macros>
6 <expand macro="requirements"/>
6 <command detect_errors="exit_code"><![CDATA[ 7 <command detect_errors="exit_code"><![CDATA[
7 positions2snv_invariant_alignment.pl -i $snv_table --reference-file $reference_genome -o outputs -f $out_format $keep_all $merge_alignment 8 positions2snv_invariant_alignment.pl -i $snv_table --reference-file $reference_genome -o outputs -f $out_format $keep_all $merge_alignment
8 ]]></command> 9 ]]></command>
9 <inputs> 10 <inputs>
10 <param name="snv_table" type="data" label="SNV table" format="tabular"/> 11 <param name="snv_table" type="data" label="SNV table" format="tabular"/>
83 ============ 84 ============
84 85
85 Creates a SNV and non-variant alignment from the SNVPhyl SNV positions table and a reference genome. 86 Creates a SNV and non-variant alignment from the SNVPhyl SNV positions table and a reference genome.
86 87
87 </help> 88 </help>
88 89 <expand macro="citations"/>
89 <citations>
90 </citations>
91 </tool> 90 </tool>