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comparison callaavar.xml @ 4:8cdffc02d2e2 draft

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planemo upload for repository https://github.com/phac-nml/quasitools commit 19e0f266ee455b82432e2d7b987b35de8c7a14d5
author nml
date Wed, 25 Apr 2018 10:38:00 -0400
parents a7093d5933a8
children b69e898b8109
comparison
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3:8dacd75ca8f1 4:8cdffc02d2e2
1 <tool id="aavariants" name="Amino Acid Variants" version="0.1.0"> 1 <tool id="aavariants" name="Amino Acid Variants" version="0.1.0">
2 <description>Identifies amino acid mutations</description> 2 <description>Identifies amino acid mutations</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="0.2.3">quasitools</requirement> 4 <requirement type="package" version="0.3.1">quasitools</requirement>
5 </requirements> 5 </requirements>
6 <command detect_errors="exit_code"><![CDATA[ 6 <command detect_errors="exit_code"><![CDATA[
7 7
8 ln -f -s ${input_bam.metadata.bam_index} ${input_bam}.bai && 8 ln -f -s ${input_bam.metadata.bam_index} ${input_bam}.bai &&
9 quasitools call aavar $input_bam $ref_file $var_file $input_genes 9 quasitools call aavar $input_bam $ref_file $var_file $input_genes