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comparison callntvar.xml @ 8:9def47f3c1e4 draft

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planemo upload for repository https://github.com/phac-nml/quasitools commit 940b463cac33438233bc7a8a1695ca6d34b31a35
author nml
date Tue, 06 Aug 2019 08:50:28 -0400
parents dcd43b402eb3
children 18aad692772a
comparison
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7:dcd43b402eb3 8:9def47f3c1e4
1 <tool id="callntvar" name="Nucleotide Variants" version="0.5.1"> 1 <tool id="callntvar" name="Nucleotide Variants" version="0.7.0">
2 <description>Identifies nucleotide variants</description> 2 <description>Identifies nucleotide variants</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="0.5.1">quasitools</requirement> 4 <requirement type="package" version="0.7.0">quasitools</requirement>
5 </requirements> 5 </requirements>
6 <command detect_errors="exit_code"><![CDATA[ 6 <command detect_errors="exit_code"><![CDATA[
7 7
8 ln -f -s ${input_bam.metadata.bam_index} ${input_bam}.bai && 8 ln -f -s ${input_bam.metadata.bam_index} ${input_bam}.bai &&
9 quasitools call ntvar $input_bam $ref_file 9 quasitools call ntvar $input_bam $ref_file