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comparison callaavar.xml @ 2:a7093d5933a8 draft

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planemo upload for repository https://github.com/phac-nml/quasitools commit de4309426401ce655435d6867b05c3673b9d086f
author nml
date Mon, 26 Mar 2018 14:23:30 -0400
parents 71976cfc9022
children 8cdffc02d2e2
comparison
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1:1abf6b32ecfd 2:a7093d5933a8
1 <tool id="aavariants" name="Amino Acid Variants" version="0.1.0"> 1 <tool id="aavariants" name="Amino Acid Variants" version="0.1.0">
2 <description>Identifies amino acid mutations</description> 2 <description>Identifies amino acid mutations</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="0.2.2">quasitools</requirement> 4 <requirement type="package" version="0.2.3">quasitools</requirement>
5 </requirements> 5 </requirements>
6 <command detect_errors="exit_code"><![CDATA[ 6 <command detect_errors="exit_code"><![CDATA[
7 7
8 ln -f -s ${input_bam.metadata.bam_index} ${input_bam}.bai && 8 ln -f -s ${input_bam.metadata.bam_index} ${input_bam}.bai &&
9 quasitools call aavar $input_bam $ref_file $var_file $input_genes 9 quasitools call aavar $input_bam $ref_file $var_file $input_genes