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comparison distance.xml @ 9:18aad692772a draft default tip

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planemo upload for repository https://github.com/phac-nml/quasitools commit 5a9e4c9a582828654893166caf20576f5e0c418e
author nml
date Mon, 20 Jun 2022 20:06:36 +0000
parents 9def47f3c1e4
children
comparison
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8:9def47f3c1e4 9:18aad692772a
1 <tool id="distance" name="Quasispecies Distance" version="0.7.0"> 1 <tool id="distance" name="Quasispecies Distance" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@">
2 <description>Calculate the evolutionary distance between viral quasispecies.</description> 2 <description>Calculate the evolutionary distance between viral quasispecies.</description>
3 <requirements> 3 <macros>
4 <requirement type="package" version="0.7.0">quasitools</requirement> 4 <import>macros.xml</import>
5 </requirements> 5 </macros>
6 <expand macro="requirements"/>
6 <command detect_errors="exit_code"><![CDATA[ 7 <command detect_errors="exit_code"><![CDATA[
7 8
8 #for $bam_file in $bam_files 9 #for $bam_file in $bam_files
9 ln -s $bam_file '${bam_file.name}' && 10 ln -s $bam_file '${bam_file.name}' &&
10 ln -s $bam_file.metadata.bam_index '${bam_file.name}.bai' && 11 ln -s $bam_file.metadata.bam_index '${bam_file.name}.bai' &&
112 ------- 113 -------
113 114
114 A CSV file containing a matrix of similarities or distances, as requested by the user. 115 A CSV file containing a matrix of similarities or distances, as requested by the user.
115 116
116 ]]></help> 117 ]]></help>
117 <citations> 118 <expand macro="citations" />
118 <citation type="bibtex">
119 @misc{GitHubquasitoolsdistance,
120 title = {quasitools distance},
121 publisher = {phac-nml},
122 journal = {GitHub repository},
123 url = {https://github.com/phac-nml/quasitools},
124 }
125 </citation>
126 </citations>
127 </tool> 119 </tool>