Mercurial > repos > nml > quasitools
diff test-data/mutant_types.csv @ 0:71976cfc9022 draft
planemo upload for repository https://github.com/phac-nml/quasitools commit 8a264400a75945e2e0fdd5a08c007a8b1b7a2f0f
| author | nml |
|---|---|
| date | Mon, 04 Dec 2017 10:25:26 -0500 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/mutant_types.csv Mon Dec 04 10:25:26 2017 -0500 @@ -0,0 +1,25 @@ +#gene,nt position (gene),nt start position,nt end position,ref codon,mutant codon,ref AA,mutant AA,coverage,mutant frequency,mutant type,NS count,S count +IN,3246-4112,3384,3386,gga,ggG,G,G,2647,0.08,S,0.0000,1.0000 +IN,3246-4112,3387,3389,gaa,Aaa,E,K,2646,0.30,NS,1.0000,0.0000 +IN,3246-4112,3450,3452,gaa,Aaa,E,K,2455,0.08,NS,1.0000,0.0000 +IN,3246-4112,3450,3452,gaa,AGa,E,R,2455,0.81,NS,2.0000,0.0000 +IN,3246-4112,3450,3452,gaa,gGa,E,G,2455,0.08,NS,1.0000,0.0000 +IN,3246-4112,3453,3455,gga,Aga,G,R,2422,0.21,NS,1.0000,0.0000 +IN,3246-4112,3453,3455,gga,AgG,G,R,2422,0.74,NS,1.5000,0.5000 +IN,3246-4112,3453,3455,gga,gAa,G,E,2422,1.03,NS,1.0000,0.0000 +IN,3246-4112,3453,3455,gga,ggG,G,G,2422,0.21,S,0.0000,1.0000 +IN,3246-4112,3456,3458,aaa,aaG,K,K,2411,0.91,S,0.0000,1.0000 +IN,3246-4112,3459,3461,gtt,Ttt,V,F,2406,0.33,NS,1.0000,0.0000 +IN,3246-4112,3462,3464,atc,Ttc,I,F,2408,0.17,NS,1.0000,0.0000 +IN,3246-4112,3504,3506,gaa,Aaa,E,K,2319,0.39,NS,1.0000,0.0000 +IN,3246-4112,3507,3509,gtt,gGt,V,G,2297,0.09,NS,1.0000,0.0000 +IN,3246-4112,3510,3512,att,Ttt,I,F,2281,0.44,NS,1.0000,0.0000 +IN,3246-4112,3519,3521,gaa,Aaa,E,K,2140,0.51,NS,1.0000,0.0000 +IN,3246-4112,3519,3521,gaa,AGa,E,R,2140,0.56,NS,2.0000,0.0000 +IN,3246-4112,3519,3521,gaa,gGa,E,G,2140,0.33,NS,1.0000,0.0000 +IN,3246-4112,3522,3524,aca,aAa,T,K,2093,0.10,NS,1.0000,0.0000 +IN,3246-4112,3531,3533,gaa,Aaa,E,K,1959,1.48,NS,1.0000,0.0000 +IN,3246-4112,3531,3533,gaa,gGa,E,G,1959,1.63,NS,1.0000,0.0000 +IN,3246-4112,3546,3548,ctt,Ttt,L,F,530,0.94,NS,1.0000,0.0000 +RT,1566-2885,1872,1874,aaa,aaC,K,N,154,7.79,NS,1.0000,0.0000 +RT,1566-2885,2823,2825,cct,ccC,P,P,1362,0.37,S,0.0000,1.0000