Mercurial > repos > nml > quasitools
diff callaavar.xml @ 8:9def47f3c1e4 draft
planemo upload for repository https://github.com/phac-nml/quasitools commit 940b463cac33438233bc7a8a1695ca6d34b31a35
| author | nml |
|---|---|
| date | Tue, 06 Aug 2019 08:50:28 -0400 |
| parents | dcd43b402eb3 |
| children | 18aad692772a |
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--- a/callaavar.xml Fri Nov 23 15:43:16 2018 -0500 +++ b/callaavar.xml Tue Aug 06 08:50:28 2019 -0400 @@ -1,7 +1,7 @@ -<tool id="aavariants" name="Amino Acid Variants" version="0.5.1"> +<tool id="aavariants" name="Amino Acid Variants" version="0.7.0"> <description>Identifies amino acid mutations</description> <requirements> - <requirement type="package" version="0.5.1">quasitools</requirement> + <requirement type="package" version="0.7.0">quasitools</requirement> </requirements> <command detect_errors="exit_code"><![CDATA[ @@ -48,13 +48,13 @@ <param name="min_freq" value="0.01" /> <output name="output" > <assert_contents> - <has_text_matching expression="#CHROM\sGENE\sTYPE\sWILDTYPE\sPOS\sMUTANT\sFILTER\sMUTANT_FREQ\sCOVERAGE\sINFO"/> - <has_text_matching expression="hxb2_pol\sRT\smutation\sK\s103\sN\sPASS\s0.0779\s154\sWC=aaa;MC=aaC;MCF=0.0779;CAT=.;SRVL=." /> - <has_text_matching expression="hxb2_pol\sIN\smutation\sG\s70\sE\sPASS\s0.0103\s2422\sWC=gga;MC=gAa;MCF=0.0103;CAT=.;SRVL=." /> - <has_text_matching expression="hxb2_pol\sIN\smutation\sE\s96\sG\sPASS\s0.0163\s1959\sWC=gaa;MC=gGa;MCF=0.0163;CAT=.;SRVL=." /> - <has_text_matching expression="hxb2_pol\sIN\smutation\sE\s96\sK\sPASS\s0.0148\s1959\sWC=gaa;MC=Aaa;MCF=0.0148;CAT=.;SRVL=." /> - <has_text_matching expression="hxb2_pol\sIN\smutation\sG\s189\sR\sPASS\s0.0234\s214\sWC=ggg;MC=Agg;MCF=0.0234;CAT=.;SRVL=." /> - <has_text_matching expression="hxb2_pol\sIN\smutation\sG\s192\sW\sPASS\s0.0159\s314\sWC=ggg;MC=Tgg;MCF=0.0159;CAT=.;SRVL=." /> + <has_text_matching expression="#CHROM"/> + <has_text_matching expression="0.0779" /> + <has_text_matching expression="0.0103;CAT=.;SRVL=." /> + <has_text_matching expression="0.0163;CAT=.;SRVL=." /> + <has_text_matching expression="0.0148;CAT=.;SRVL=." /> + <has_text_matching expression="0.0234;CAT=.;SRVL=." /> + <has_text_matching expression="0.0159;CAT=.;SRVL=." /> </assert_contents> </output> </test>