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diff drmutations.xml @ 5:b69e898b8109 draft

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planemo upload for repository https://github.com/phac-nml/quasitools commit e30c0687f755a46c5b3bd265a1478a1abf5dc9f1
author nml
date Fri, 24 Aug 2018 16:50:28 -0400
parents 8cdffc02d2e2
children dcd43b402eb3
line wrap: on
line diff
--- a/drmutations.xml	Wed Apr 25 10:38:00 2018 -0400
+++ b/drmutations.xml	Fri Aug 24 16:50:28 2018 -0400
@@ -1,15 +1,15 @@
-<tool id="drmutations" name="Drug Resistance Mutations" version="0.1.0">
+<tool id="drmutations" name="Drug Resistance Mutations" version="0.4.2">
     <description></description>
     <requirements>
-        <requirement type="package" version="0.3.1">quasitools</requirement>
+        <requirement type="package" version="0.4.2">quasitools</requirement>
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
 
         ln -f -s ${input_bam.metadata.bam_index} ${input_bam}.bai &&
-        quasitools drmutations $input_bam $ref_file $var_file $input_genes 
-        
+        quasitools drmutations $input_bam $ref_file $var_file $input_genes
+
         #if $mutation_db:
-          $mutation_db 
+          $mutation_db
         #end if
 
         #if $min_freq:
@@ -17,11 +17,11 @@
         #end if
 
         #if $reporting_thres:
-            -t $reporting_thres 
+            -t $reporting_thres
         #end if
 
         -o output.csv
-        
+
     ]]></command>
     <inputs>
         <param name="input_bam" type="data" format="bam" optional="false" label="Bam file" />