# HG changeset patch
# User nml
# Date 1524667080 14400
# Node ID 8cdffc02d2e2158256ced2403fec410bb9e5341c
# Parent 8dacd75ca8f151e6d952fb284a7c4ee10d29086a
planemo upload for repository https://github.com/phac-nml/quasitools commit 19e0f266ee455b82432e2d7b987b35de8c7a14d5
diff -r 8dacd75ca8f1 -r 8cdffc02d2e2 aacoverage.xml
--- a/aacoverage.xml Mon Mar 26 15:38:19 2018 -0400
+++ b/aacoverage.xml Wed Apr 25 10:38:00 2018 -0400
@@ -1,7 +1,7 @@
Builds an aa census and returns its coverage
- quasitools
+ quasitools
Identifies amino acid mutations
- quasitools
+ quasitools
Identifies codon variants and non-synonymous/synonymous mutations
- quasitools
+ quasitools
Identifies nucleotide variants
- quasitools
+ quasitools
Generate a consensus sequence from a BAM file
- quasitools
+ quasitools
+ Calculate the evolutionary distance between viral quasispecies.
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+ @misc{GitHubquasitoolsdistance,
+ title = {quasitools distance},
+ publisher = {phac-nml},
+ journal = {GitHub repository},
+ url = {https://github.com/phac-nml/quasitools},
+ }
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diff -r 8dacd75ca8f1 -r 8cdffc02d2e2 dnds.xml
--- a/dnds.xml Mon Mar 26 15:38:19 2018 -0400
+++ b/dnds.xml Wed Apr 25 10:38:00 2018 -0400
@@ -1,7 +1,7 @@
Calculate the dN/dS value for each region in a bed file
- quasitools
+ quasitools
- quasitools
+ quasitools
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Identifies drug resistance within an NGS dataset
- quasitools
+ quasitools
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@@ -115,8 +146,8 @@
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- generate_consensus
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+ consensus['consensus_bool'] == "true_consensus"
diff -r 8dacd75ca8f1 -r 8cdffc02d2e2 test-data/quasi1.bai
Binary file test-data/quasi1.bai has changed
diff -r 8dacd75ca8f1 -r 8cdffc02d2e2 test-data/quasi1.bam
Binary file test-data/quasi1.bam has changed
diff -r 8dacd75ca8f1 -r 8cdffc02d2e2 test-data/quasi2.bai
Binary file test-data/quasi2.bai has changed
diff -r 8dacd75ca8f1 -r 8cdffc02d2e2 test-data/quasi2.bam
Binary file test-data/quasi2.bam has changed