# HG changeset patch
# User nml
# Date 1522093099 14400
# Node ID 8dacd75ca8f151e6d952fb284a7c4ee10d29086a
# Parent  a7093d5933a8d81c17dcbd4610690f722d5dd952
planemo upload for repository https://github.com/phac-nml/quasitools commit 68f3866f4ee926abe3ec1b936e5d6166f94fed6c

diff -r a7093d5933a8 -r 8dacd75ca8f1 consensus.xml
--- a/consensus.xml	Mon Mar 26 14:23:30 2018 -0400
+++ b/consensus.xml	Mon Mar 26 15:38:19 2018 -0400
@@ -9,9 +9,9 @@
         quasitools consensus $input_bam $ref_file 
 
         #if $fasta_id.type == 'default':
-            -i $input_bam.name 
+            -i '${input_bam.element_identifier}' 
         #elif $fasta_id.type == 'custom':
-            -i $fasta_id.custom_id 
+            -i '${fasta_id.custom_id}'
         #end if
 
         #if $base_type.type == 'mixed':