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comparison contains.xml @ 2:1ec42f033bb4 draft default tip

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"planemo upload for repository https://github.com/phac-nml/refseq_masher commit 7176dbde2cafbf0858e806923a9f0bd3b2ebf7c0"
author nml
date Fri, 25 Jun 2021 23:38:54 +0000
parents 2c1cb37a3ffe
children
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1:2c1cb37a3ffe 2:1ec42f033bb4
1 <tool id="refseq_masher_contains" name="RefSeq Masher Contains" version="0.1.2"> 1 <tool id="refseq_masher_contains" name="RefSeq Masher Contains" version="0.1.2">
2 <description> 2 <description>
3 Find NCBI RefSeq Genomes contained in your sequences 3 Find NCBI RefSeq Genomes contained in your sequences
4 </description> 4 </description>
5 <requirements> 5 <requirements>
6 <requirement type="package" version="0.1.1">refseq_masher</requirement> 6 <requirement type="package" version="0.1.2">refseq_masher</requirement>
7 </requirements> 7 </requirements>
8 <command detect_errors="exit_code"> 8 <command detect_errors="exit_code">
9 <![CDATA[ 9 <![CDATA[
10 10
11 #import re 11 #import re
155 <param name="top_n_results" value="5"/> 155 <param name="top_n_results" value="5"/>
156 <param name="output_type" value="tab"/> 156 <param name="output_type" value="tab"/>
157 <param name="min_identity" value="0.9"/> 157 <param name="min_identity" value="0.9"/>
158 <param name="max_pvalue" value="0.01"/> 158 <param name="max_pvalue" value="0.01"/>
159 </section> 159 </section>
160 <output name="output_path_tab" 160 <output name="output_path_tab" ftype="tabular">
161 value="SRR1203042_1-head4000-contains.tab" 161 <assert_contents>
162 ftype="tabular" 162 <has_n_columns n="24" />
163 lines_diff="0"> 163 <has_n_lines n="6" />
164 </assert_contents>
164 </output> 165 </output>
165 </test> 166 </test>
166 </tests> 167 </tests>
167 <help> 168 <help>
168 <![CDATA[ 169 <![CDATA[