Mercurial > repos > nml > refseq_masher

comparison test-data/SRR1203042_1-head4000-contains.tab @ 2:1ec42f033bb4 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/phac-nml/refseq_masher commit 7176dbde2cafbf0858e806923a9f0bd3b2ebf7c0"
author nml
date Fri, 25 Jun 2021 23:38:54 +0000
parents 2c1cb37a3ffe
children
comparison
equal deleted inserted replaced
1:2c1cb37a3ffe 2:1ec42f033bb4
1 sample top_taxonomy_name identity shared_hashes median_multiplicity pvalue full_taxonomy taxonomic_subspecies taxonomic_species taxonomic_genus taxonomic_family taxonomic_order taxonomic_class taxonomic_phylum taxonomic_superkingdom subspecies serovar plasmid bioproject biosample taxid assembly_accession match_id match_comment
2 SRR1203042-head4000 Salmonella enterica subsp. enterica serovar Typhimurium 0.934797 136/400 1 0.0 Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella; enterica; subsp. enterica; serovar Typhimurium Salmonella enterica subsp. enterica Salmonella enterica Salmonella Enterobacteriaceae Enterobacterales Gammaproteobacteria Proteobacteria Bacteria enterica Typhimurium PRJNA188943 90371 ./rcn/refseq-NG-90371-PRJNA188943-.-.-.-Salmonella_enterica_subsp._enterica_serovar_Typhimurium.fna
3 SRR1203042-head4000 Salmonella enterica subsp. enterica serovar Typhimurium 0.934797 136/400 1 0.0 Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella; enterica; subsp. enterica; serovar Typhimurium Salmonella enterica subsp. enterica Salmonella enterica Salmonella Enterobacteriaceae Enterobacterales Gammaproteobacteria Proteobacteria Bacteria enterica Typhimurium PRJNA188943 90371 ./rcn/refseq-NR-90371-PRJNA188943-.-.-.-Salmonella_enterica_subsp._enterica_serovar_Typhimurium.fna
4 SRR1203042-head4000 Salmonella enterica subsp. enterica serovar Choleraesuis 0.9326110000000001 131/400 1 0.0 Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella; enterica; subsp. enterica; serovar Choleraesuis Salmonella enterica subsp. enterica Salmonella enterica Salmonella Enterobacteriaceae Enterobacterales Gammaproteobacteria Proteobacteria Bacteria enterica Choleraesuis PRJNA188943 119912 ./rcn/refseq-NG-119912-PRJNA188943-.-.-.-Salmonella_enterica_subsp._enterica_serovar_Choleraesuis.fna
5 SRR1203042-head4000 Salmonella enterica subsp. enterica serovar Choleraesuis 0.9326110000000001 131/400 1 0.0 Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella; enterica; subsp. enterica; serovar Choleraesuis Salmonella enterica subsp. enterica Salmonella enterica Salmonella Enterobacteriaceae Enterobacterales Gammaproteobacteria Proteobacteria Bacteria enterica Choleraesuis PRJNA188943 119912 ./rcn/refseq-NR-119912-PRJNA188943-.-.-.-Salmonella_enterica_subsp._enterica_serovar_Choleraesuis.fna
6 SRR1203042-head4000 Atlantibacter hermannii 0.9224829999999999 110/400 1 0.0 Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Atlantibacter; hermannii Atlantibacter hermannii Atlantibacter Enterobacteriaceae Enterobacterales Gammaproteobacteria Proteobacteria Bacteria PRJNA33175 565 ./rcn/refseq-NR-565-PRJNA33175-.-.-.-Escherichia_hermannii.fna