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comparison test-data/alleles-output.json @ 3:5c8ff92e38a9 draft

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Update to 1.0.2
author nml
date Wed, 14 Jun 2017 14:36:59 -0400
parents ebee10be4297
children 17fcac7ddf54
comparison
equal deleted inserted replaced
2:13632190a0ff 3:5c8ff92e38a9
1 {"AE014613-699860.fasta": {"NZ_AOXE01000059.1_338": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000017.1_96": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000059.1_370": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000021.1_61": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000034.1_164": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000016.1_8": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000011.1_85": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000036.1_31": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000036.1_39": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000011.1_83": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000031.1_80": {"blast_result": {"is_perfect": true, "slen": 699860, "pident": 100.0, "marker": "NZ_AOXE01000031.1_80", "qseqid": "NZ_AOXE01000031.1_80|2955003506", "qstart": 1, "is_trunc": false, "sseq_msa_gaps": 0, "sseq": "ATGAGTAAATGCAGTGCTGATGAAACCCCGGTTTGCTGCTGTATGGACGTTGGAACCATCATGGACAACTCCGATTGCACCGCGTCATACAGCCGCGTATTCGCTACCCGCGCAGAGGCTGAAGAGACGCTGGCGGCGTTAACCGAAAAAGCGCGTAGCGTGGAGTCTGAACCTTGCCAAATTACGCCAACCTTTACCGAGGAATCCGAAGGCGTTCGTCTGGATATTGATTTTGTTTTCGCCTGCGAAGCAGAAACGCTGATCTTCCAGCTCGGCCTGCGTTAA", "bitscore": 527, "sseq_msa_p_gaps": 0.0, "evalue": 3.18e-151, "gapopen": 0, "send": 548003, "has_perfect_match": true, "allele": 2955003506, "sstart": 547719, "allele_name": 2955003506, "start_idx": 547718.0, "qend": 285, "needs_revcomp": false, "is_extended": false, "mismatch": 0, "coverage": 1.0, "too_many_gaps": false, "end_idx": 548002.0, "trunc": false, "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "qlen": 285, "is_match": true, "length": 285}, "name": 2955003506, "seq": "ATGAGTAAATGCAGTGCTGATGAAACCCCGGTTTGCTGCTGTATGGACGTTGGAACCATCATGGACAACTCCGATTGCACCGCGTCATACAGCCGCGTATTCGCTACCCGCGCAGAGGCTGAAGAGACGCTGGCGGCGTTAACCGAAAAAGCGCGTAGCGTGGAGTCTGAACCTTGCCAAATTACGCCAACCTTTACCGAGGAATCCGAAGGCGTTCGTCTGGATATTGATTTTGTTTTCGCCTGCGAAGCAGAAACGCTGATCTTCCAGCTCGGCCTGCGTTAA"}, "NZ_AOXE01000064.1_27": {"seq": null, "name": null, "blast_result": null}, "NZ_AOYX01000075.1_47": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000064.1_26": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000073.1_48": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000064.1_36": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000059.1_395": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000081.1_272": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000081.1_124": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000068.1_45": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000081.1_105": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000085.1_60": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000053.1_173": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000004.1_154": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000081.1_103": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000021.1_165": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000034.1_134": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000083.1_53": {"blast_result": {"is_perfect": false, "slen": 699860, "pident": 99.56700000000001, "marker": "NZ_AOXE01000083.1_53", "qseqid": "NZ_AOXE01000083.1_53|1998597791", "qstart": 1, "is_trunc": false, "sseq_msa_gaps": 0, "sseq": "ATGATTGACTGGCAGGATCTCCACCATAGCGAACTTACTGTTCCTCAACTTTACGCGTTACTCAAATTGCGCTGCGCGGTCTTTGTGGTAGAACAGCGCTGTCCTTACCTGGATGTGGATGGCGATGATTTAGTCGGCGACAATCGGCATATTCTGGGCTGGCATCAGGATGAGCTGGTGGCGTATGCGAGGATTCTGAAAAGTGATAACGAATCAGACCCGGTTGTCATTGGCCGGGTGATCGTCAGCGATGCCTGGCGAGGGGCGAAACTGGGCCAGCAATTAATGGCGAAAACGCTGGAATCTTGTGGGCGGCACTGGCCGGATAAGCCGCTATATCTGGGGGCGCAGGCGCATCTGCAACCTTTTTATGCGCGGTTTGGTTTTATTCCCGTCACCGATGTTTATGACGAAGACGGCATTCCGCACCGGGGAATGGCGCGGGAGGTTCATCAGGCATAA", "bitscore": 843, "sseq_msa_p_gaps": 0.0, "evalue": 0.0, "gapopen": 0, "send": 627983, "has_perfect_match": false, "allele": 1998597791, "sstart": 627522, "allele_name": 2640609716, "start_idx": 627521.0, "qend": 462, "needs_revcomp": false, "is_extended": false, "mismatch": 2, "coverage": 1.0, "too_many_gaps": false, "end_idx": 627982.0, "trunc": false, "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "qlen": 462, "is_match": true, "length": 462}, "name": 2640609716, "seq": "ATGATTGACTGGCAGGATCTCCACCATAGCGAACTTACTGTTCCTCAACTTTACGCGTTACTCAAATTGCGCTGCGCGGTCTTTGTGGTAGAACAGCGCTGTCCTTACCTGGATGTGGATGGCGATGATTTAGTCGGCGACAATCGGCATATTCTGGGCTGGCATCAGGATGAGCTGGTGGCGTATGCGAGGATTCTGAAAAGTGATAACGAATCAGACCCGGTTGTCATTGGCCGGGTGATCGTCAGCGATGCCTGGCGAGGGGCGAAACTGGGCCAGCAATTAATGGCGAAAACGCTGGAATCTTGTGGGCGGCACTGGCCGGATAAGCCGCTATATCTGGGGGCGCAGGCGCATCTGCAACCTTTTTATGCGCGGTTTGGTTTTATTCCCGTCACCGATGTTTATGACGAAGACGGCATTCCGCACCGGGGAATGGCGCGGGAGGTTCATCAGGCATAA"}, "NZ_AOXE01000043.1_4": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000068.1_5": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000059.1_129": {"blast_result": {"is_perfect": false, "slen": 699860, "pident": 99.27, "marker": "NZ_AOXE01000059.1_129", "qseqid": "NZ_AOXE01000059.1_129|361249593", "qstart": 1, "is_trunc": false, "sseq_msa_gaps": 0, "sseq": "ATGGGTAAAATTATTGGTATCGACCTGGGTACTACCAACTCTTGTGTAGCGATTATGGATGGAACGCAGGCACGCGTGCTGGAGAACGCCGAGGGCGATCGCACTACGCCTTCTATCATTGCTTATACCCAGGATGGTGAAACTCTGGTTGGTCAGCCGGCTAAACGTCAGGCAGTGACAAACCCGCAAAACACCCTGTTTGCGATTAAACGCCTGATTGGCCGCCGCTTCCAGGACGAAGAAGTTCAACGTGACGTTTCTATCATGCCGTACAAAATCATCGGCGCCGACAACGGCGACGCATGGCTTGATGTGAAAGGTCAGAAAATGGCGCCGCCGCAGATTTCTGCCGAAGTGCTGAAGAAAATGAAGAAAACGGCTGAAGATTATCTGGGCGAACCGGTAACTGAAGCGGTTATCACCGTACCGGCTTACTTTAACGATGCGCAGCGTCAGGCTACCAAAGATGCTGGTCGTATCGCGGGGCTGGAAGTTAAACGTATCATCAACGAACCGACTGCCGCAGCGCTGGCTTACGGTCTGGATAAAGAAGTCGGCAACCGTACTATCGCGGTTTACGACCTCGGTGGTGGTACTTTCGATATCTCTATTATCGAAATCGACGAAGTTGATGGCGAAAAAACCTTTGAAGTTCTGGCAACCAACGGTGATACCCACCTGGGTGGTGAAGACTTCGATACCCGCCTGATCAACTACCTCGTTGACGAGTTTAAGAAAGATCAGGGCATCGACCTGCGTAACGATCCGCTGGCCATGCAGCGCCTGAAAGAAGCCGCAGAAAAAGCCAAAATCGAGCTGTCTTCTGCGCAGCAGACCGACGTGAACCTGCCGTACATTACCGCAGATGCCACCGGTCCGAAACACATGAACATCAAAGTGACCCGTGCGAAACTGGAAAGCCTGGTTGAAGATCTGGTGAACCGTTCTATCGAGCCGCTGAAAGTCGCACTGCAGGACGCTGGCCTGTCCGTGTCTGATATCAACGACGTGATCCTCGTCGGCGGTCAGACCCGTATGCCAATGGTGCAGAAAAAAGTGGCTGAGTTCTTCGGTAAAGAGCCGCGTAAAGACGTTAACCCGGACGAAGCTGTGGCTATCGGCGCAGCGGTACAGGGCGGCGTATTGACCGGTGATGTGAAAGACGTACTGCTGCTGGACGTTACCCCGCTGTCTCTGGGTATCGAAACGATGGGTGGCGTGATGACTCCGCTTATCACCAAAAACACCACCATCCCGACCAAGCACAGCCAGGTGTTCTCTACTGCGGAAGACAACCAGTCTGCGGTAACCATCCATGTGCTGCAGGGTGAGCGTAAACGTGCGTCTGATAACAAATCTCTGGGTCAGTTCAACCTGGATGGCATCAACCCGGCGCCGCGCGGTATGCCGCAGATCGAAGTCACCTTCGATATCGATGCTGACGGTATCCTGCACGTCTCCGCGAAAGATAAAAATAGCGGTAAAGAGCAGAAGATCACTATCAAGGCGTCTTCTGGTCTGAACGAGGAAGAAATTCAGAAAATGGTTCGCGATGCAGAAGCGAACGCTGAATCCGACCGTAAGTTCGAAGAGCTGGTTCAGACCCGTAACCAGGGTGACCATCTGCTGCACAGCACCCGTAAGCAGGTTGAAGAAGCAGGCGATAAACTGCCGGCTGATGACAAAACCGCTATCGAGTCTGCGCTGAGCGCGCTGGAAACTGCCCTGAAAGGCGAAGATAAAGCCGCTATCGAAGCGAAAATGCAGGAGCTGGCGCAGGTTTCCCAGAAACTGATGGAAATCGCTCAGCAGCAACATGCGCAGCAGCAGGCTGGCTCCGCCGACGCTTCTGCAAACAATGCGAAAGATGACGACGTTGTCGACGCTGAGTTTGAAGAAGTAAAAGATAAAAAATAA", "bitscore": 3463, "sseq_msa_p_gaps": 0.0, "evalue": 0.0, "gapopen": 0, "send": 13510, "has_perfect_match": false, "allele": 361249593, "sstart": 11594, "allele_name": 278162969, "start_idx": 11593.0, "qend": 1917, "needs_revcomp": false, "is_extended": false, "mismatch": 14, "coverage": 1.0, "too_many_gaps": false, "end_idx": 13509.0, "trunc": false, "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "qlen": 1917, "is_match": true, "length": 1917}, "name": 278162969, "seq": "ATGGGTAAAATTATTGGTATCGACCTGGGTACTACCAACTCTTGTGTAGCGATTATGGATGGAACGCAGGCACGCGTGCTGGAGAACGCCGAGGGCGATCGCACTACGCCTTCTATCATTGCTTATACCCAGGATGGTGAAACTCTGGTTGGTCAGCCGGCTAAACGTCAGGCAGTGACAAACCCGCAAAACACCCTGTTTGCGATTAAACGCCTGATTGGCCGCCGCTTCCAGGACGAAGAAGTTCAACGTGACGTTTCTATCATGCCGTACAAAATCATCGGCGCCGACAACGGCGACGCATGGCTTGATGTGAAAGGTCAGAAAATGGCGCCGCCGCAGATTTCTGCCGAAGTGCTGAAGAAAATGAAGAAAACGGCTGAAGATTATCTGGGCGAACCGGTAACTGAAGCGGTTATCACCGTACCGGCTTACTTTAACGATGCGCAGCGTCAGGCTACCAAAGATGCTGGTCGTATCGCGGGGCTGGAAGTTAAACGTATCATCAACGAACCGACTGCCGCAGCGCTGGCTTACGGTCTGGATAAAGAAGTCGGCAACCGTACTATCGCGGTTTACGACCTCGGTGGTGGTACTTTCGATATCTCTATTATCGAAATCGACGAAGTTGATGGCGAAAAAACCTTTGAAGTTCTGGCAACCAACGGTGATACCCACCTGGGTGGTGAAGACTTCGATACCCGCCTGATCAACTACCTCGTTGACGAGTTTAAGAAAGATCAGGGCATCGACCTGCGTAACGATCCGCTGGCCATGCAGCGCCTGAAAGAAGCCGCAGAAAAAGCCAAAATCGAGCTGTCTTCTGCGCAGCAGACCGACGTGAACCTGCCGTACATTACCGCAGATGCCACCGGTCCGAAACACATGAACATCAAAGTGACCCGTGCGAAACTGGAAAGCCTGGTTGAAGATCTGGTGAACCGTTCTATCGAGCCGCTGAAAGTCGCACTGCAGGACGCTGGCCTGTCCGTGTCTGATATCAACGACGTGATCCTCGTCGGCGGTCAGACCCGTATGCCAATGGTGCAGAAAAAAGTGGCTGAGTTCTTCGGTAAAGAGCCGCGTAAAGACGTTAACCCGGACGAAGCTGTGGCTATCGGCGCAGCGGTACAGGGCGGCGTATTGACCGGTGATGTGAAAGACGTACTGCTGCTGGACGTTACCCCGCTGTCTCTGGGTATCGAAACGATGGGTGGCGTGATGACTCCGCTTATCACCAAAAACACCACCATCCCGACCAAGCACAGCCAGGTGTTCTCTACTGCGGAAGACAACCAGTCTGCGGTAACCATCCATGTGCTGCAGGGTGAGCGTAAACGTGCGTCTGATAACAAATCTCTGGGTCAGTTCAACCTGGATGGCATCAACCCGGCGCCGCGCGGTATGCCGCAGATCGAAGTCACCTTCGATATCGATGCTGACGGTATCCTGCACGTCTCCGCGAAAGATAAAAATAGCGGTAAAGAGCAGAAGATCACTATCAAGGCGTCTTCTGGTCTGAACGAGGAAGAAATTCAGAAAATGGTTCGCGATGCAGAAGCGAACGCTGAATCCGACCGTAAGTTCGAAGAGCTGGTTCAGACCCGTAACCAGGGTGACCATCTGCTGCACAGCACCCGTAAGCAGGTTGAAGAAGCAGGCGATAAACTGCCGGCTGATGACAAAACCGCTATCGAGTCTGCGCTGAGCGCGCTGGAAACTGCCCTGAAAGGCGAAGATAAAGCCGCTATCGAAGCGAAAATGCAGGAGCTGGCGCAGGTTTCCCAGAAACTGATGGAAATCGCTCAGCAGCAACATGCGCAGCAGCAGGCTGGCTCCGCCGACGCTTCTGCAAACAATGCGAAAGATGACGACGTTGTCGACGCTGAGTTTGAAGAAGTAAAAGATAAAAAATAA"}, "NZ_AOXE01000017.1_40": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000019.1_14": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000041.1_85": {"seq": null, "name": null, "blast_result": null}, "NZ_AYDA01000043.1_275": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000025.1_20": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000017.1_82": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000017.1_80": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000081.1_294": {"seq": null, "name": null, "blast_result": null}, "NZ_ABFH02000002.1_1303": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000059.1_9": {"blast_result": {"is_perfect": false, "slen": 699860, "pident": 99.315, "marker": "NZ_AOXE01000059.1_9", "qseqid": "NZ_AOXE01000059.1_9|1013412501", "qstart": 1, "is_trunc": false, "sseq_msa_gaps": 0, "sseq": "ATGGAAAAACAACGCGGTTTCACGCTTATCGAACTGATGGTCGTTATTGGCATCATCGCCATTTTAAGCGCCATTGGCATTCCGGCTTACCAGAACTATCTGCGTAAAGCGGCGCTGACGGATATGTTGCAAACATTTGTCCCCTACCGTACTGCCGTCGAACTCTGCGCTCTGGAACATGGTGGGACGAGCACATGCGATGCGGGCGTCAACGGTATCCCCTCGCCCGTCATCACCCGTTATGTTTCGGGCATGAGCGTGGAAAAAGGCGTCATCACGCTTACCGGTCAGGAGAGTCTGAGCGGGCTTAGCGTCATCATGACGCCCGCCTGGGACAATGCTAACGGCATTACCGGCTGGACGCGTAACTGCAATATTCAAAGCGACAGCGCGTTACAACAGGCTTGTGAAGATGTCTTCCGTTTTGACGCCAACTAA", "bitscore": 793, "sseq_msa_p_gaps": 0.0, "evalue": 0.0, "gapopen": 0, "send": 170852, "has_perfect_match": false, "allele": 1013412501, "sstart": 171289, "allele_name": 2978539204, "start_idx": 170851.0, "qend": 438, "needs_revcomp": true, "is_extended": false, "mismatch": 3, "coverage": 1.0, "too_many_gaps": false, "end_idx": 171288.0, "trunc": false, "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "qlen": 438, "is_match": true, "length": 438}, "name": 2978539204, "seq": "ATGGAAAAACAACGCGGTTTCACGCTTATCGAACTGATGGTCGTTATTGGCATCATCGCCATTTTAAGCGCCATTGGCATTCCGGCTTACCAGAACTATCTGCGTAAAGCGGCGCTGACGGATATGTTGCAAACATTTGTCCCCTACCGTACTGCCGTCGAACTCTGCGCTCTGGAACATGGTGGGACGAGCACATGCGATGCGGGCGTCAACGGTATCCCCTCGCCCGTCATCACCCGTTATGTTTCGGGCATGAGCGTGGAAAAAGGCGTCATCACGCTTACCGGTCAGGAGAGTCTGAGCGGGCTTAGCGTCATCATGACGCCCGCCTGGGACAATGCTAACGGCATTACCGGCTGGACGCGTAACTGCAATATTCAAAGCGACAGCGCGTTACAACAGGCTTGTGAAGATGTCTTCCGTTTTGACGCCAACTAA"}, "NZ_AOXE01000021.1_79": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000081.1_76": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000081.1_249": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000072.1_12": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000059.1_430": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000050.1_18": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000081.1_136": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000077.1_25": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000011.1_82": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000053.1_86": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000033.1_51": {"blast_result": {"is_perfect": true, "slen": 699860, "pident": 100.0, "marker": "NZ_AOXE01000033.1_51", "qseqid": "NZ_AOXE01000033.1_51|3293595301", "qstart": 1, "is_trunc": false, "sseq_msa_gaps": 0, "sseq": "ATGCAGGAAAACCACATTCATTCCGATACCACCTTTGCGCTGCGAAGCGTCGCTTTTCGTGTGCCGGGCCGCACGCTTTTACACCCCCTCTCGTTAACGTTTCCCGCAGGTCGAGTCACCGGACTTATCGGCCATAATGGTTCCGGTAAATCCACGCTGTTAAAAATGCTGGGCCGCCATCAGCTGCCTTCCGAAGGGGATATTCTGCTCGACAATCAGCCGCTGGCGAGCTGGAGCAGCAAGGCGTTTGCCCGCAAAGTTGCCTATCTGCCTCAACAATTGCCGCAGGCGGAAGGAATGACGGTGCGCGAACTGGTGGCGATTGGCCGCTATCCGTGGCACGGCGCGTTGGGACGCTTTGGCGTCGCGGACCGGGAAAAAGTAGACGAGGCGATTACGCTGGTCGGCTTAAAACCGCTGGCGCATCGTCTGGTCGATAGCCTGTCCGGCGGTGAACGCCAGCGCGCGTGGATTGCCATGCTGGTCGCGCAGGACAGCCGTTGTCTGCTGCTGGATGAGCCGACGTCAGCGCTGGATATCGCCCATCAGGTTGACGTGCTGGCGCTGGTGCATCGTTTAAGCCAACAGCGCGGGCTGACGGTGGTTGCGGTGCTGCACGATATCAACATGGCGGCCCGCTACTGTGATTATTTAGTAGCGCTACGCGGCGGTGAAATGATTGCGCAAGGAACGCCTGCGGAACTGATGCGCAGTGACACGCTGGAACAGATTTACGGTATCCCGATGGGTATCCTTCCGCATCCGGCGGGCGCCGCGCCTGTGAGTTTTGTGTATTAA", "bitscore": 1474, "sseq_msa_p_gaps": 0.0, "evalue": 0.0, "gapopen": 0, "send": 231175, "has_perfect_match": true, "allele": 3293595301, "sstart": 230378, "allele_name": 3293595301, "start_idx": 230377.0, "qend": 798, "needs_revcomp": false, "is_extended": false, "mismatch": 0, "coverage": 1.0, "too_many_gaps": false, "end_idx": 231174.0, "trunc": false, "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "qlen": 798, "is_match": true, "length": 798}, "name": 3293595301, "seq": "ATGCAGGAAAACCACATTCATTCCGATACCACCTTTGCGCTGCGAAGCGTCGCTTTTCGTGTGCCGGGCCGCACGCTTTTACACCCCCTCTCGTTAACGTTTCCCGCAGGTCGAGTCACCGGACTTATCGGCCATAATGGTTCCGGTAAATCCACGCTGTTAAAAATGCTGGGCCGCCATCAGCTGCCTTCCGAAGGGGATATTCTGCTCGACAATCAGCCGCTGGCGAGCTGGAGCAGCAAGGCGTTTGCCCGCAAAGTTGCCTATCTGCCTCAACAATTGCCGCAGGCGGAAGGAATGACGGTGCGCGAACTGGTGGCGATTGGCCGCTATCCGTGGCACGGCGCGTTGGGACGCTTTGGCGTCGCGGACCGGGAAAAAGTAGACGAGGCGATTACGCTGGTCGGCTTAAAACCGCTGGCGCATCGTCTGGTCGATAGCCTGTCCGGCGGTGAACGCCAGCGCGCGTGGATTGCCATGCTGGTCGCGCAGGACAGCCGTTGTCTGCTGCTGGATGAGCCGACGTCAGCGCTGGATATCGCCCATCAGGTTGACGTGCTGGCGCTGGTGCATCGTTTAAGCCAACAGCGCGGGCTGACGGTGGTTGCGGTGCTGCACGATATCAACATGGCGGCCCGCTACTGTGATTATTTAGTAGCGCTACGCGGCGGTGAAATGATTGCGCAAGGAACGCCTGCGGAACTGATGCGCAGTGACACGCTGGAACAGATTTACGGTATCCCGATGGGTATCCTTCCGCATCCGGCGGGCGCCGCGCCTGTGAGTTTTGTGTATTAA"}, "NZ_AOXE01000077.1_29": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000081.1_286": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000023.1_30": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000081.1_97": {"seq": null, "name": null, "blast_result": null}, "NZ_AOYX01000009.1_43": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000081.1_92": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000068.1_37": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000068.1_38": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000085.1_65": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000061.1_20": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000053.1_180": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000061.1_22": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000003.1_70": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000052.1_92": {"blast_result": {"is_perfect": true, "slen": 699860, "pident": 100.0, "marker": "NZ_AOXE01000052.1_92", "qseqid": "NZ_AOXE01000052.1_92|398274060", "qstart": 1, "is_trunc": false, 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"ATGATTAAACTTTCGAATATTACCAAAGTGTTCCAGCAGGGGGCGCGCACCATTCAGGCGCTGAACAATGTCAGCCTGCATGTCCCTGCCGGACAAATTTACGGCGTCATCGGCGCCTCCGGCGCCGGTAAAAGTACGCTCATTCGCTGCGTAAACTTACTTGAACGTCCTACTGAAGGAAGCGTAATGGTAGGCGGTCAGGAGCTGACAACGCTTTCAGAGTCCGGGTTGACCAAAGCTCGCCGTCAAATCGGCATGATTTTCCAACATTTTAACCTGCTCTCTTCCCGTACCGTGTTTGGCAACGTCGCGTTGCCGCTGGAACTGGATAACACACCAAAGGAAGAGATCAAACGCCGTGTCACAGAGCTGCTGGATTTAGTCGGTCTTGGCGACAAGCACGACAGCTATCCGGCAAATCTTTCCGGCGGTCAGAAACAGCGTGTCGCGATTGCCCGCGCGTTAGCCAGTAATCCAAAAGTGTTGCTGTGCGATGAAGCCACCAGCGCGCTTGATCCCGCGACGACCCGTTCGATTCTGGAATTGCTGAAAGATATCAACCGTCGTCTGGGGTTGACGATTCTGCTTATCACTCATGAAATGGATGTCGTAAAACGTATCTGCGACTGCGTTGCCGTCATCAGTAATGGCGAGCTTATTGAGCAGGATACGGTCAGCGAAGTCTTCTCGCATCCTAAAACGCCGCTGGCGCAGAAGTTTATTCAGTCCACTCTGCATCTGGACATTCCGGAAGATTACCAGGCGCGTTTGAAAGCGTCGCCGGAAACTGACAGCGTGCCGATGCTGCGCATGGAGTTCACCGGACAGTCTGTGGATGCCCCGCTGCTTTCTGAAACCGCGCGTCGTTTCAACGTGAACAATAATATTATCAGCGCACAGATGGATTACGCGGGCGGTGTGAAGTTCGGCATTATGCTAACGGAAATGCACGGCACACAAGAAGAGACGCAAGCCGCAATTGCCTGGCTGCAGGATCACCATGTGAAAGTAGAGGTACTGGGTTATGTCTGA", 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"ATGATTAAACTTTCGAATATTACCAAAGTGTTCCAGCAGGGGGCGCGCACCATTCAGGCGCTGAACAATGTCAGCCTGCATGTCCCTGCCGGACAAATTTACGGCGTCATCGGCGCCTCCGGCGCCGGTAAAAGTACGCTCATTCGCTGCGTAAACTTACTTGAACGTCCTACTGAAGGAAGCGTAATGGTAGGCGGTCAGGAGCTGACAACGCTTTCAGAGTCCGGGTTGACCAAAGCTCGCCGTCAAATCGGCATGATTTTCCAACATTTTAACCTGCTCTCTTCCCGTACCGTGTTTGGCAACGTCGCGTTGCCGCTGGAACTGGATAACACACCAAAGGAAGAGATCAAACGCCGTGTCACAGAGCTGCTGGATTTAGTCGGTCTTGGCGACAAGCACGACAGCTATCCGGCAAATCTTTCCGGCGGTCAGAAACAGCGTGTCGCGATTGCCCGCGCGTTAGCCAGTAATCCAAAAGTGTTGCTGTGCGATGAAGCCACCAGCGCGCTTGATCCCGCGACGACCCGTTCGATTCTGGAATTGCTGAAAGATATCAACCGTCGTCTGGGGTTGACGATTCTGCTTATCACTCATGAAATGGATGTCGTAAAACGTATCTGCGACTGCGTTGCCGTCATCAGTAATGGCGAGCTTATTGAGCAGGATACGGTCAGCGAAGTCTTCTCGCATCCTAAAACGCCGCTGGCGCAGAAGTTTATTCAGTCCACTCTGCATCTGGACATTCCGGAAGATTACCAGGCGCGTTTGAAAGCGTCGCCGGAAACTGACAGCGTGCCGATGCTGCGCATGGAGTTCACCGGACAGTCTGTGGATGCCCCGCTGCTTTCTGAAACCGCGCGTCGTTTCAACGTGAACAATAATATTATCAGCGCACAGATGGATTACGCGGGCGGTGTGAAGTTCGGCATTATGCTAACGGAAATGCACGGCACACAAGAAGAGACGCAAGCCGCAATTGCCTGGCTGCAGGATCACCATGTGAAAGTAGAGGTACTGGGTTATGTCTGA"}, "NZ_AOXE01000033.1_3": {"blast_result": {"is_perfect": false, "slen": 699860, "pident": 99.694, "marker": "NZ_AOXE01000033.1_3", "qseqid": "NZ_AOXE01000033.1_3|1356543497", "qstart": 1, "is_trunc": false, "sseq_msa_gaps": 0, "sseq": "ATGTCTGAGGCAATGATGTGGTTACTGGTTCGTGGCGTCTGGGAAACGCTGGCGATGACCTTTGTCTCCGGTTTCTTCGGTTTCGTGATTGGCCTGCCGGTTGGCGTATTGCTGTATGTTACGCGCCCGGGGCAGATTATGGAGAACGCCAGGCTGTATCGCTCCCTCTCTGCGGTGGTCAATATTTTCCGCTCGATTCCCTTTATCATCCTGTTGGTGTGGATGATTCCTTTTACCCGAATAATTGTCGGCACCTCCATTGGTTTGCAGGCCGCGATTGTACCGCTGACCGTCGGCGCCGCGCCTTTTATCGCCCGTATAGTGGAAAATGCGTTGTTAGAGATCCCTGCCGGGCTGATTGAAGCCTCGCGAGCGATGGGCGCCACGCCGCTGCAAATTGTACGTAAAATCCTTTTACCGGAAGCGCTGCCTGGTCTGGTGAATGCGGCAACCATTACACTAATCACCCTGGTCGGTTACTCCGCAATGGGCGGCGCCGTCGGCGCAGGCGGCCTCGGTCAAATCGGCTATCAGTACGGTTATATTGGATACAATGCTACCGTGATGAATACGGTGCTGGTATTACTTGTCGTTCTGGTTTATTTAATTCAGTTATCCGGCGATCGCATCGTCAGGGCTGTCACGCATAAGTAA", "bitscore": 1197, "sseq_msa_p_gaps": 0.0, "evalue": 0.0, "gapopen": 0, "send": 284666, "has_perfect_match": 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"ATGTCTGAGGCAATGATGTGGTTACTGGTTCGTGGCGTCTGGGAAACGCTGGCGATGACCTTTGTCTCCGGTTTCTTCGGTTTCGTGATTGGCCTGCCGGTTGGCGTATTGCTGTATGTTACGCGCCCGGGGCAGATTATGGAGAACGCCAGGCTGTATCGCTCCCTCTCTGCGGTGGTCAATATTTTCCGCTCGATTCCCTTTATCATCCTGTTGGTGTGGATGATTCCTTTTACCCGAATAATTGTCGGCACCTCCATTGGTTTGCAGGCCGCGATTGTACCGCTGACCGTCGGCGCCGCGCCTTTTATCGCCCGTATAGTGGAAAATGCGTTGTTAGAGATCCCTGCCGGGCTGATTGAAGCCTCGCGAGCGATGGGCGCCACGCCGCTGCAAATTGTACGTAAAATCCTTTTACCGGAAGCGCTGCCTGGTCTGGTGAATGCGGCAACCATTACACTAATCACCCTGGTCGGTTACTCCGCAATGGGCGGCGCCGTCGGCGCAGGCGGCCTCGGTCAAATCGGCTATCAGTACGGTTATATTGGATACAATGCTACCGTGATGAATACGGTGCTGGTATTACTTGTCGTTCTGGTTTATTTAATTCAGTTATCCGGCGATCGCATCGTCAGGGCTGTCACGCATAAGTAA"}, "NZ_AOXE01000004.1_140": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000036.1_66": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000040.1_31": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000017.1_130": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000052.1_141": {"blast_result": {"is_perfect": true, "slen": 699860, "pident": 100.0, "marker": "NZ_AOXE01000052.1_141", "qseqid": "NZ_AOXE01000052.1_141|2084418558", "qstart": 1, "is_trunc": false, "sseq_msa_gaps": 0, "sseq": "ATGATTACAGGTATCCAGATTACTAAAGCCGCTAACGACGACCTGCTGAATTCCTTCTGGCTGCTGGACAGCGAAAAAGGCGAAGCGCGCTGCATCGTTGCAAAATCCGGCTTTGCTGAAGATGAAGTTGTGGCTGTCAGCAAACTGGGCGAGATTGAATACCGTGAAATTCCGATGGAAGTTAAACCGGAAGTACGCGTTGAAGGCGGTCAGCATCTGAACGTTAACGTTCTGCGTCGTGAAACTCTGGAAGACGCGGTTAAGCATCCGGAAAAATACCCGCAGCTGACTATTCGTGTTTCTGGTTATGCGGTGCGTTTTAACTCCCTGACGCCGGAACAGCAGCGCGACGTTATCGCTCGTACCTTTACCGAAAGCCTGTAA", "bitscore": 710, "sseq_msa_p_gaps": 0.0, "evalue": 0.0, "gapopen": 0, "send": 303343, "has_perfect_match": true, "allele": 2084418558, "sstart": 302960, "allele_name": 2084418558, "start_idx": 302959.0, "qend": 384, "needs_revcomp": false, "is_extended": false, "mismatch": 0, "coverage": 1.0, "too_many_gaps": false, "end_idx": 303342.0, "trunc": false, "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "qlen": 384, "is_match": true, "length": 384}, "name": 2084418558, "seq": "ATGATTACAGGTATCCAGATTACTAAAGCCGCTAACGACGACCTGCTGAATTCCTTCTGGCTGCTGGACAGCGAAAAAGGCGAAGCGCGCTGCATCGTTGCAAAATCCGGCTTTGCTGAAGATGAAGTTGTGGCTGTCAGCAAACTGGGCGAGATTGAATACCGTGAAATTCCGATGGAAGTTAAACCGGAAGTACGCGTTGAAGGCGGTCAGCATCTGAACGTTAACGTTCTGCGTCGTGAAACTCTGGAAGACGCGGTTAAGCATCCGGAAAAATACCCGCAGCTGACTATTCGTGTTTCTGGTTATGCGGTGCGTTTTAACTCCCTGACGCCGGAACAGCAGCGCGACGTTATCGCTCGTACCTTTACCGAAAGCCTGTAA"}, "NZ_AOXE01000059.1_328": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000083.1_86": {"blast_result": {"is_perfect": false, "slen": 699860, "pident": 99.275, "marker": "NZ_AOXE01000083.1_86", "qseqid": "NZ_AOXE01000083.1_86|4207330955", "qstart": 1, "is_trunc": false, "sseq_msa_gaps": 0, "sseq": "ATGAAACTGATGTTCGCATCGGACATTCATGGTTCTTTACCCGCCACGGAACGCGTGCTTGAGCGGTTCGCGCAAAGCGGCGCGCGTTGGCTGGTGATATTAGGCGATGTCCTTAACCACGGGCCGCGCAATGCGCTGCCTGAAGGCTATGCGCCCGCCCAGGTTGCCGAACGCCTGAACGCGGTGGCGACGCAAATCATTGCCGTGCGCGGCAACTGCGATAGCGAAGTGGATCAGATGCTGCTGCATTTCCCGATAACTGCACCGTGGCAGCAAATATTGACGCAAGAGAGGCGGCTATTTTTAACGCATGGGCACCTCTTCGGGCCGACGAATCTGCCCGCTCTGCATACTGGCGATGTGTTGGTCTATGGTCATACGCATCTGCCGGTGGCGCAACAGCAGGAAGGACTGTATCACTTTAATCCTGGGTCAGTGAGCATCCCGAAAGGCGGGTATGCAGCAAGCTACGGTATTCTGGATGATAATGTGTTGAGCGTAATCGCACTCAATGATCAAAGTATCATTGCGCAGGTTGCAATTAACTCGTAA", "bitscore": 998, "sseq_msa_p_gaps": 0.0, "evalue": 0.0, "gapopen": 0, "send": 590671, "has_perfect_match": false, "allele": 4207330955, "sstart": 590120, "allele_name": 3258707132, "start_idx": 590119.0, "qend": 552, "needs_revcomp": false, "is_extended": false, "mismatch": 4, "coverage": 1.0, "too_many_gaps": false, "end_idx": 590670.0, "trunc": false, "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "qlen": 552, "is_match": true, "length": 552}, "name": 3258707132, "seq": "ATGAAACTGATGTTCGCATCGGACATTCATGGTTCTTTACCCGCCACGGAACGCGTGCTTGAGCGGTTCGCGCAAAGCGGCGCGCGTTGGCTGGTGATATTAGGCGATGTCCTTAACCACGGGCCGCGCAATGCGCTGCCTGAAGGCTATGCGCCCGCCCAGGTTGCCGAACGCCTGAACGCGGTGGCGACGCAAATCATTGCCGTGCGCGGCAACTGCGATAGCGAAGTGGATCAGATGCTGCTGCATTTCCCGATAACTGCACCGTGGCAGCAAATATTGACGCAAGAGAGGCGGCTATTTTTAACGCATGGGCACCTCTTCGGGCCGACGAATCTGCCCGCTCTGCATACTGGCGATGTGTTGGTCTATGGTCATACGCATCTGCCGGTGGCGCAACAGCAGGAAGGACTGTATCACTTTAATCCTGGGTCAGTGAGCATCCCGAAAGGCGGGTATGCAGCAAGCTACGGTATTCTGGATGATAATGTGTTGAGCGTAATCGCACTCAATGATCAAAGTATCATTGCGCAGGTTGCAATTAACTCGTAA"}, "NZ_AOXE01000081.1_179": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000047.1_56": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000073.1_19": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000085.1_34": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000081.1_223": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000011.1_101": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000073.1_98": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000068.1_46": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000081.1_55": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000052.1_41": {"blast_result": {"is_perfect": false, "slen": 699860, "pident": 98.73899999999999, "marker": "NZ_AOXE01000052.1_41", "qseqid": "NZ_AOXE01000052.1_41|3504573244", "qstart": 1, "is_trunc": false, "sseq_msa_gaps": 0, "sseq": "ATGCAAAAGCAAGCTGAGTTGTATCGTGGTAAAGCGAAAACCGTATACAGCACGGAAAACCCGGACCTGTTGGTGCTCGAATTCCGCAATGATACGTCAGCAGGGGATGGCGCGCGCATTGAACAGTTTGATCGCAAAGGCATGGTAAATAACAAATTCAACCATTTCATTATGACCAAACTGGCCGAGGCGGGCATCCCGACCCAGATGGAACGTTTGCTGTCTGATACCGAGTGTCTGGTGAAGAAGCTGGAGATGGTGCCGGTTGAATGTGTGGTGCGCAACCGTGCGGCAGGGTCGCTGGTCAAGCGTCTGGGCGTGGAAGAAGGCATGGAGCTTAACCCGCCGATCTTCGATCTGTTCCTGAAAAACGACGCGCTGCACGACCCGATGGTGAATAGTTCCTACTGTGAAACTTTCGGGTGGGTAAGCCAGGAAAATCTGGCGCGTATGAAAGAGCTAACCTACAAAGCCAACGACGTACTAAAAAAACTGTTTGATGACGCGGGTCTTATCCTGGTGGATTTCAAACTGGAGTTTGGCCTGTATAAAGGCGAAGTGGTGCTGGGCGATGAGTTTTCACCGGACGGTAGCCGCCTGTGGGATAAAGAGACGCTGGACAAAATGGACAAAGACCGCTTCCGCCAGAGCCTGGGCGGTCTGATTGAAGCCTATGAAGCCGTTGCGCATCGCCTGGGCGTGAAATTAGATTAA", "bitscore": 1269, "sseq_msa_p_gaps": 0.0, "evalue": 0.0, "gapopen": 0, "send": 442434, "has_perfect_match": false, "allele": 3504573244, "sstart": 441721, "allele_name": 1973458150, "start_idx": 441720.0, "qend": 714, "needs_revcomp": false, "is_extended": false, "mismatch": 9, "coverage": 1.0, "too_many_gaps": false, "end_idx": 442433.0, "trunc": false, "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "qlen": 714, "is_match": true, "length": 714}, "name": 1973458150, "seq": "ATGCAAAAGCAAGCTGAGTTGTATCGTGGTAAAGCGAAAACCGTATACAGCACGGAAAACCCGGACCTGTTGGTGCTCGAATTCCGCAATGATACGTCAGCAGGGGATGGCGCGCGCATTGAACAGTTTGATCGCAAAGGCATGGTAAATAACAAATTCAACCATTTCATTATGACCAAACTGGCCGAGGCGGGCATCCCGACCCAGATGGAACGTTTGCTGTCTGATACCGAGTGTCTGGTGAAGAAGCTGGAGATGGTGCCGGTTGAATGTGTGGTGCGCAACCGTGCGGCAGGGTCGCTGGTCAAGCGTCTGGGCGTGGAAGAAGGCATGGAGCTTAACCCGCCGATCTTCGATCTGTTCCTGAAAAACGACGCGCTGCACGACCCGATGGTGAATAGTTCCTACTGTGAAACTTTCGGGTGGGTAAGCCAGGAAAATCTGGCGCGTATGAAAGAGCTAACCTACAAAGCCAACGACGTACTAAAAAAACTGTTTGATGACGCGGGTCTTATCCTGGTGGATTTCAAACTGGAGTTTGGCCTGTATAAAGGCGAAGTGGTGCTGGGCGATGAGTTTTCACCGGACGGTAGCCGCCTGTGGGATAAAGAGACGCTGGACAAAATGGACAAAGACCGCTTCCGCCAGAGCCTGGGCGGTCTGATTGAAGCCTATGAAGCCGTTGCGCATCGCCTGGGCGTGAAATTAGATTAA"}, "NZ_AOXE01000059.1_72": {"blast_result": {"is_perfect": false, "slen": 699860, "pident": 99.56700000000001, "marker": "NZ_AOXE01000059.1_72", "qseqid": "NZ_AOXE01000059.1_72|2285585917", "qstart": 1, "is_trunc": false, "sseq_msa_gaps": 0, "sseq": "ATGCAAAAACGTCTTATGACCGCACTGTTTACCGCAGCAACACTATTCACCGTCGCAGGATGCTCTTCTAACCAGGCGGTTGAAACCACGGATGGCAAAACTATTGTCACCGACGGGAAACCCGAGGTCGATAACGATACCGGTATGGTGTCTTACAAAAACGCCGCCACCGGGAAAACCGAACAGATTAACCGCGATCAGCTGAAAAATATGAGCGAGCTGGATAATTAA", "bitscore": 422, "sseq_msa_p_gaps": 0.0, "evalue": 1.2299999999999996e-119, "gapopen": 0, "send": 93646, "has_perfect_match": false, "allele": 2285585917, "sstart": 93416, "allele_name": 2229984332, "start_idx": 93415.0, "qend": 231, "needs_revcomp": false, "is_extended": false, "mismatch": 1, "coverage": 1.0, "too_many_gaps": false, "end_idx": 93645.0, "trunc": false, "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "qlen": 231, "is_match": true, "length": 231}, "name": 2229984332, "seq": "ATGCAAAAACGTCTTATGACCGCACTGTTTACCGCAGCAACACTATTCACCGTCGCAGGATGCTCTTCTAACCAGGCGGTTGAAACCACGGATGGCAAAACTATTGTCACCGACGGGAAACCCGAGGTCGATAACGATACCGGTATGGTGTCTTACAAAAACGCCGCCACCGGGAAAACCGAACAGATTAACCGCGATCAGCTGAAAAATATGAGCGAGCTGGATAATTAA"}, "NZ_AOXE01000052.1_43": {"blast_result": {"is_perfect": false, "slen": 699860, "pident": 99.204, "marker": "NZ_AOXE01000052.1_43", "qseqid": "NZ_AOXE01000052.1_43|2121159858", "qstart": 1, "is_trunc": false, "sseq_msa_gaps": 0, "sseq": "ATGTTCACGGGAAGTATTGTCGCGCTTGTTACGCCGATGGATGAGAAAGGTAACGTCAGTAGGTCTTGCCTGAAAAAACTCATTGATTATCATGTCGCCAACGGTACCTCGGCGATTGTTTCGGTTGGCACCACCGGCGAGTCTGCCACGCTAAGCCATGATGAACATGGCGATGTCGTGATGATGACGCTGGAACTGGCTGACGGACGTATTCCGGTTATCGCTGGCACGGGCGCAAACGCGACCGCGGAAGCGATTAGCCTGACGCAGCGTTTTAACGATAGCGGCATTGTTGGCTGCCTGACGGTAACGCCGTACTACAATCGCCCCACGCAGGAAGGTTTGTTCCAGCATTTCAAAGCCATCGCGGAACACACTGACTTGCCGCAAATTCTGTATAATGTGCCGTCCCGTACCGGTTGCGACATGTTGCCGGAAACCGTGGGTCGTCTGGCGGAAATAAAAAATATTATCGCTATCAAAGAGGCGACAGGGAACTTAACCCGCGTTCACCAGATCAAAGAGCTGGTTTCAGACGATTTTATTCTGCTTAGCGGCGATGACGCGTCCGCGCTGGACTTTATGCAACTGGGTGGTCATGGCGTGATTTCCGTTACTGCTAACGTAGCGGCGCGCGATATGGCTGACATGTGCAAACTGGCGGCGGAAGGGCAATTTGCCGAGGCGCGCGCTATCAACCAGCGTCTGATGCCGTTACACAACAAACTATTTGTCGAACCCAATCCTATCCCGGTGAAATGGGCATGTAAGGCATTGGGTCTTGTGGCGACCGACACGCTGCGCCTGCCAATGACGCCTATCACCGACCATGGTCGTGACATCGTCAAAGCAGCGCTTCAGCATGCTGGCCTGCTGTAA", "bitscore": 1585, "sseq_msa_p_gaps": 0.0, "evalue": 0.0, "gapopen": 0, "send": 440495, "has_perfect_match": false, "allele": 2121159858, "sstart": 439617, "allele_name": 926214622, "start_idx": 439616.0, "qend": 879, "needs_revcomp": false, "is_extended": false, "mismatch": 7, "coverage": 1.0, "too_many_gaps": false, "end_idx": 440494.0, "trunc": false, "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "qlen": 879, "is_match": true, "length": 879}, "name": 926214622, "seq": "ATGTTCACGGGAAGTATTGTCGCGCTTGTTACGCCGATGGATGAGAAAGGTAACGTCAGTAGGTCTTGCCTGAAAAAACTCATTGATTATCATGTCGCCAACGGTACCTCGGCGATTGTTTCGGTTGGCACCACCGGCGAGTCTGCCACGCTAAGCCATGATGAACATGGCGATGTCGTGATGATGACGCTGGAACTGGCTGACGGACGTATTCCGGTTATCGCTGGCACGGGCGCAAACGCGACCGCGGAAGCGATTAGCCTGACGCAGCGTTTTAACGATAGCGGCATTGTTGGCTGCCTGACGGTAACGCCGTACTACAATCGCCCCACGCAGGAAGGTTTGTTCCAGCATTTCAAAGCCATCGCGGAACACACTGACTTGCCGCAAATTCTGTATAATGTGCCGTCCCGTACCGGTTGCGACATGTTGCCGGAAACCGTGGGTCGTCTGGCGGAAATAAAAAATATTATCGCTATCAAAGAGGCGACAGGGAACTTAACCCGCGTTCACCAGATCAAAGAGCTGGTTTCAGACGATTTTATTCTGCTTAGCGGCGATGACGCGTCCGCGCTGGACTTTATGCAACTGGGTGGTCATGGCGTGATTTCCGTTACTGCTAACGTAGCGGCGCGCGATATGGCTGACATGTGCAAACTGGCGGCGGAAGGGCAATTTGCCGAGGCGCGCGCTATCAACCAGCGTCTGATGCCGTTACACAACAAACTATTTGTCGAACCCAATCCTATCCCGGTGAAATGGGCATGTAAGGCATTGGGTCTTGTGGCGACCGACACGCTGCGCCTGCCAATGACGCCTATCACCGACCATGGTCGTGACATCGTCAAAGCAGCGCTTCAGCATGCTGGCCTGCTGTAA"}, "NZ_AOXE01000081.1_52": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000059.1_353": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000080.1_12": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000080.1_13": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000053.1_130": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000059.1_79": {"blast_result": {"is_perfect": false, "slen": 699860, "pident": 99.3, "marker": "NZ_AOXE01000059.1_79", "qseqid": "NZ_AOXE01000059.1_79|2405867870", "qstart": 1, "is_trunc": false, "sseq_msa_gaps": 0, "sseq": "ATGGATTTCAACTTAAATGACGAACAGGAGCTGTTTGTCGCCGGTATTCGCGAACTGATGGCCAGTGAGAACTGGGAAGCTTATTTTGCCGAGTGCGATCGTGACAGCGTCTACCCTGAGCGTTTTGTAAAAGCGCTGGCGGATATGGGTATTGATAGCCTGCTGATCCCGGAAGAACACGGCGGTCTGGAAGCGGGTTTTGTTACCGTCGCCGCCGTCTGGATGGAACTGGGACGTCTTGGCGCGCCAACTTACGTGTTGTACCAATTGCCGGGAGGTTTTAACACTTTCCTGCGTGAAGGGACTCAGGAGCAAATTGATAAAATCATGGCGTTCCGGGGCACCGGTAAGCAGATGTGGAACTCTGCTATCACCGAACCGGGAGCGGGATCGGATGTTGGTAGTCTGAAAACCACTTATACACGCAAAAATGGTAAGGTTTATCTCAATGGCAGTAAGTGCTTTATCACCAGTAGCGCCTATACCCCGTACATCGTGGTCATGGCGAGAGACGGTGCATCGCCGGATAAACCGGTTTACACCGAGTGGTTTGTGGACATGAGCAAAGCGGGTATCAAGGTCAACAAACTGGAGAAACTCGGTCTGCGCATGGATAGCTGCTGTGAAATCACCTTTGACGACGTTGAACTGGACGAGAAAGACATGTTCGGTCGGGAAGGTAACGGCTTCAACCGCGTGAAAGAAGAGTTTGACCATGAACGCTTCCTCGTCGCGCTGACCAACTACGGTACCGCAATGTGCACTTTTGAAGACGCTGCGCGTTACGCTAATCAGCGCGTGCAGTTTGGTGAAGCTATTGGCCGTTTCCAGCTGATTCAGGAGAAGTTTGCGCATATGGCGATCAAACTGAACTCCATGAAAAATATGCTGCTGGAAGCCGCGTGGAAAGCAGATAACGGCACTATTACCTCCGGCGACGCGGCCATGTGCAAATACTTCTGCGCCAACGCCGCGTTTGAAGTGGTAGACACCGCCATGCAGGTACTGGGAGGTGTTGGTATCGCGGGCAACCACCGCATCACGCGTTTCTGGCGTGACCTGCGCGTTGACCGTGTTTCTGGTGGTTCTGACGAAATGCAGATCCTGACGTTGGGTCGTGCGGTACTCAAGCAATACCGCTAA", 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"ATGGATTTCAACTTAAATGACGAACAGGAGCTGTTTGTCGCCGGTATTCGCGAACTGATGGCCAGTGAGAACTGGGAAGCTTATTTTGCCGAGTGCGATCGTGACAGCGTCTACCCTGAGCGTTTTGTAAAAGCGCTGGCGGATATGGGTATTGATAGCCTGCTGATCCCGGAAGAACACGGCGGTCTGGAAGCGGGTTTTGTTACCGTCGCCGCCGTCTGGATGGAACTGGGACGTCTTGGCGCGCCAACTTACGTGTTGTACCAATTGCCGGGAGGTTTTAACACTTTCCTGCGTGAAGGGACTCAGGAGCAAATTGATAAAATCATGGCGTTCCGGGGCACCGGTAAGCAGATGTGGAACTCTGCTATCACCGAACCGGGAGCGGGATCGGATGTTGGTAGTCTGAAAACCACTTATACACGCAAAAATGGTAAGGTTTATCTCAATGGCAGTAAGTGCTTTATCACCAGTAGCGCCTATACCCCGTACATCGTGGTCATGGCGAGAGACGGTGCATCGCCGGATAAACCGGTTTACACCGAGTGGTTTGTGGACATGAGCAAAGCGGGTATCAAGGTCAACAAACTGGAGAAACTCGGTCTGCGCATGGATAGCTGCTGTGAAATCACCTTTGACGACGTTGAACTGGACGAGAAAGACATGTTCGGTCGGGAAGGTAACGGCTTCAACCGCGTGAAAGAAGAGTTTGACCATGAACGCTTCCTCGTCGCGCTGACCAACTACGGTACCGCAATGTGCACTTTTGAAGACGCTGCGCGTTACGCTAATCAGCGCGTGCAGTTTGGTGAAGCTATTGGCCGTTTCCAGCTGATTCAGGAGAAGTTTGCGCATATGGCGATCAAACTGAACTCCATGAAAAATATGCTGCTGGAAGCCGCGTGGAAAGCAGATAACGGCACTATTACCTCCGGCGACGCGGCCATGTGCAAATACTTCTGCGCCAACGCCGCGTTTGAAGTGGTAGACACCGCCATGCAGGTACTGGGAGGTGTTGGTATCGCGGGCAACCACCGCATCACGCGTTTCTGGCGTGACCTGCGCGTTGACCGTGTTTCTGGTGGTTCTGACGAAATGCAGATCCTGACGTTGGGTCGTGCGGTACTCAAGCAATACCGCTAA"}, "NZ_AOXE01000081.1_64": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000023.1_25": {"seq": null, "name": null, "blast_result": null}, "NZ_AOYI01000008.1_9": {"blast_result": {"is_perfect": false, "slen": 699860, "pident": 99.77600000000001, "marker": "NZ_AOYI01000008.1_9", "qseqid": "NZ_AOYI01000008.1_9|133546264", "qstart": 1, "is_trunc": false, "sseq_msa_gaps": 0, "sseq": "ATGATTGCCATCTCCCGGACGGTCTCCATAGCCGATAATGAGCTGGAAATTACGGCCATTCGCGCGCAGGGCGCGGGTGGTCAGCACGTAAATAAGACCTCTAGCGCGATTCATTTGCGCTTTGACATTCGGGCCTCTGGCCTGCCAGAGTATTATAAACAGCGTTTGCTGACGGCCAGCCACCATCTGATAAGCGATGATGGCGTCATTATCATTAAGGCGCAGGAGTTCCGGAGCCAGGAGCTCAACCGGGAAGCGGCTATCGCCAGGCTGGTTGCCGTCATAAAAGAATTAACCGCGGAGCAGAAAAGCCGTCGCGCAACCCGTCCGACGCGTGCCTCGAAAGAGCGCCGCTTGTCCTCAAAGGCGCAAAAATCTTCTGTAAAGGCGCTTCGCGGCAAAATTCGTCGTCCACTGGATTGACGGGCAGGAATAGCAATTTCATAA", "bitscore": 821, "sseq_msa_p_gaps": 0.0, "evalue": 0.0, "gapopen": 0, "send": 279262, "has_perfect_match": false, "allele": 133546264, "sstart": 278816, "allele_name": 2019769394, "start_idx": 278815.0, "qend": 447, "needs_revcomp": false, "is_extended": false, "mismatch": 1, "coverage": 1.0, "too_many_gaps": false, "end_idx": 279261.0, "trunc": false, "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "qlen": 447, "is_match": true, "length": 447}, "name": 2019769394, "seq": "ATGATTGCCATCTCCCGGACGGTCTCCATAGCCGATAATGAGCTGGAAATTACGGCCATTCGCGCGCAGGGCGCGGGTGGTCAGCACGTAAATAAGACCTCTAGCGCGATTCATTTGCGCTTTGACATTCGGGCCTCTGGCCTGCCAGAGTATTATAAACAGCGTTTGCTGACGGCCAGCCACCATCTGATAAGCGATGATGGCGTCATTATCATTAAGGCGCAGGAGTTCCGGAGCCAGGAGCTCAACCGGGAAGCGGCTATCGCCAGGCTGGTTGCCGTCATAAAAGAATTAACCGCGGAGCAGAAAAGCCGTCGCGCAACCCGTCCGACGCGTGCCTCGAAAGAGCGCCGCTTGTCCTCAAAGGCGCAAAAATCTTCTGTAAAGGCGCTTCGCGGCAAAATTCGTCGTCCACTGGATTGACGGGCAGGAATAGCAATTTCATAA"}, "NZ_AOXE01000021.1_11": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000036.1_108": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000080.1_20": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000081.1_251": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000033.1_43": {"blast_result": {"is_perfect": false, "slen": 699860, "pident": 99.14200000000001, "marker": "NZ_AOXE01000033.1_43", "qseqid": "NZ_AOXE01000033.1_43|536730941", "qstart": 1, "is_trunc": false, "sseq_msa_gaps": 0, "sseq": "ATGAAAATCGGCATCATTGGCGCAATGGAAGAAGAAGTTACGCTGCTGCGTGACAAAATTGACAACCGTCAGACGATTACGCTGGGCGGCTGCGAAATTTACACTGGCCAGTTGAACGGCACCGAAGTGGCGTTGCTGAAATCCGGTATCGGTAAAGTCGCGGCGGCGCTGGGCGCAACGTTGCTTCTGGAGCACTGCAAGCCGGACGTGATCATCAATACCGGTTCCGCAGGCGGTCTGGCGTCCACGCTGAAGGTCGGCGATATCGTCGTCTCTGACGAAGCGCGTTACCACGACGCTGATGTGACCGCTTTCGGCTATGAATACGGGCAATTACCGGGCTGTCCGGCCGGATTTAAGGCCGATGATAAGCTGATCGCCGCCGCGGAATCCTGCATCAGGGAGTTGAATCTGAACGCGGTACGCGGCCTTATTGTTAGCGGCGACGCGTTTATTAACGGTTCCGTCGGGCTGGCGAAAATCCGGCATAACTTCCCCGACGCGGTCGCCGTAGAGATGGAAGCCACCGCTATCGCCCACGTCTGCCATAACTTCAACGTGCCGTTCGTGGTGGTACGCGCTATCTCTGACGTGGCCGATCAGCAATCGCACCTCAGCTTTGACGAATTCCTCGCGGTGGCGGCGAAACAGTCGACTCTGATGGTCGAAACGCTGGTACAGAAACTGGCGCATGGCTAA", "bitscore": 1258, "sseq_msa_p_gaps": 0.0, "evalue": 0.0, "gapopen": 0, "send": 239061, "has_perfect_match": false, "allele": 536730941, "sstart": 239759, "allele_name": 1367997025, "start_idx": 239060.0, "qend": 699, "needs_revcomp": true, "is_extended": false, "mismatch": 6, "coverage": 1.0, 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{"is_perfect": false, "slen": 699860, "pident": 99.44, "marker": "NZ_AOXE01000052.1_36", "qseqid": "NZ_AOXE01000052.1_36|2528454351", "qstart": 1, "is_trunc": false, "sseq_msa_gaps": 0, "sseq": "ATGATTACCCTCTATGGCATTAAGAATTGCGACACGATCAAAAAAGCGCGCCGTTGGCTGGAGGAGCATGGCATTGATTATCGTTTTCACGATTACCGTGTGGATGGCATAGACCTCCCTCTTCTTAATACCTTTATTGCCGAACTCGGCTGGCAGCCTTTACTGAATACGCGCGGCACAACATGGCGCAAACTGGATGAAGGCCACCGCAGCGGGATTACCGATGCCGACTCCGCCGCTGCTCTCATGGTTGAACAGCCGGCAATCATCAAACGCCCATTGCTCTGCGCGCCCGGGAAGCCTATGCTGCTTGGTTTCAGTGAATCCCGTTATCAGCAGTTTTTTGATGAGGTGTAG", "bitscore": 649, "sseq_msa_p_gaps": 0.0, "evalue": 0.0, "gapopen": 0, "send": 446846, "has_perfect_match": false, "allele": 2528454351, "sstart": 447202, "allele_name": 469721942, "start_idx": 446845.0, "qend": 357, "needs_revcomp": true, "is_extended": false, "mismatch": 2, "coverage": 1.0, "too_many_gaps": false, "end_idx": 447201.0, "trunc": false, "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "qlen": 357, "is_match": true, "length": 357}, "name": 469721942, "seq": "ATGATTACCCTCTATGGCATTAAGAATTGCGACACGATCAAAAAAGCGCGCCGTTGGCTGGAGGAGCATGGCATTGATTATCGTTTTCACGATTACCGTGTGGATGGCATAGACCTCCCTCTTCTTAATACCTTTATTGCCGAACTCGGCTGGCAGCCTTTACTGAATACGCGCGGCACAACATGGCGCAAACTGGATGAAGGCCACCGCAGCGGGATTACCGATGCCGACTCCGCCGCTGCTCTCATGGTTGAACAGCCGGCAATCATCAAACGCCCATTGCTCTGCGCGCCCGGGAAGCCTATGCTGCTTGGTTTCAGTGAATCCCGTTATCAGCAGTTTTTTGATGAGGTGTAG"}, "NZ_AOXE01000073.1_144": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000052.1_38": {"blast_result": {"is_perfect": false, "slen": 699860, "pident": 99.50200000000001, "marker": "NZ_AOXE01000052.1_38", "qseqid": "NZ_AOXE01000052.1_38|1319443396", "qstart": 1, "is_trunc": false, "sseq_msa_gaps": 0, "sseq": "ATGGACTGGCTGGCAAAATATTGGTGGATTCTGGTATTGGTGTTTCTGGTAGGCGTACTGCTGAATGTGATCAAAGATCTCAAACGCATCGACCATAAGAAATTCCTTGCCAACAAACCTGAGCTGCCCCCGCATCGCGATTTTAACGATAAGTGGGACGATGAAGACGACTGGCCGAAGAAAGATCAGCCGAAAAAGTAA", "bitscore": 366, "sseq_msa_p_gaps": 0.0, "evalue": 5.039999999999999e-103, "gapopen": 0, "send": 445487, "has_perfect_match": false, "allele": 1319443396, "sstart": 445687, "allele_name": 1317894045, "start_idx": 445486.0, "qend": 201, "needs_revcomp": true, "is_extended": false, "mismatch": 1, "coverage": 1.0, "too_many_gaps": false, "end_idx": 445686.0, "trunc": false, "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "qlen": 201, "is_match": true, "length": 201}, "name": 1317894045, "seq": "ATGGACTGGCTGGCAAAATATTGGTGGATTCTGGTATTGGTGTTTCTGGTAGGCGTACTGCTGAATGTGATCAAAGATCTCAAACGCATCGACCATAAGAAATTCCTTGCCAACAAACCTGAGCTGCCCCCGCATCGCGATTTTAACGATAAGTGGGACGATGAAGACGACTGGCCGAAGAAAGATCAGCCGAAAAAGTAA"}, "NZ_AOXE01000079.1_4": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000081.1_83": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000085.1_17": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000081.1_193": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000003.1_57": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000072.1_41": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000059.1_174": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000059.1_408": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000017.1_118": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000034.1_133": {"seq": null, "name": null, "blast_result": null}, "NC_006905.1_2841": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000052.1_131": {"blast_result": {"is_perfect": false, "slen": 699860, "pident": 99.729, "marker": "NZ_AOXE01000052.1_131", "qseqid": "NZ_AOXE01000052.1_131|1368637158", "qstart": 1, "is_trunc": false, "sseq_msa_gaps": 0, "sseq": "GTGTATCAGGTCTGTTTCGTGTGCTGGATTGTTGACGCATTCATTTATTGGTATCGCATGAACCCCATCGTAATTAATCGGCTTCAACGGAAGCTGGGCTACACTTTTAATCATCAGGAGCTGTTGCAGCAGGCATTAACTCACCGCAGCGCCAGCAGTAAACATAACGAACGCCTGGAGTTTTTAGGCGATTCAATCCTGAGCTTCGTTATCGCTAACGCGCTTTATCACCGTTTTCCACGGGTGGATGAGGGAGATATGAGCCGTATGCGCGCCACGTTGGTACGTGGTAATACGCTGGCGGAATTAGCCCGTGAATTTGATTTAGGCGAGTGCCTGCGTTTAGGGCCGGGCGAATTAAAAAGCGGCGGATTTCGTCGGGAGTCCATTCTGGCGGACACCGTGGAAGCGTTAATCGGCGGAGTATTTCTCGATAGCAATATCCAGACCGTCGAGCAGTTAATCCTTAACTGGTATAAAACCCGTCTGGATGAGATAAGTCCGGGCGATAAACAAAAAGATCCTAAAACGCGCTTGCAGGAGTATTTGCAGGGTCGCCATCTGCCGCTGCCATCTTACCTGGTTGTGCAGGTACGCGGCGAGGCGCACGATCAGGAATTTACTATCCACTGCCAGGTCAGCGGCCTGAGCGAACCGGTGGTTGGCACGGGTTCCAGCCGTCGTAAGGCGGAGCAGGCTGCCGCCGAACAGGCGCTGAAAAAACTGGAGTTGGAATGA", "bitscore": 1352, "sseq_msa_p_gaps": 0.0, "evalue": 0.0, "gapopen": 0, "send": 315935, "has_perfect_match": false, "allele": 1368637158, "sstart": 315198, "allele_name": 4160823845, "start_idx": 315197.0, "qend": 738, "needs_revcomp": false, "is_extended": 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"GTGTATCAGGTCTGTTTCGTGTGCTGGATTGTTGACGCATTCATTTATTGGTATCGCATGAACCCCATCGTAATTAATCGGCTTCAACGGAAGCTGGGCTACACTTTTAATCATCAGGAGCTGTTGCAGCAGGCATTAACTCACCGCAGCGCCAGCAGTAAACATAACGAACGCCTGGAGTTTTTAGGCGATTCAATCCTGAGCTTCGTTATCGCTAACGCGCTTTATCACCGTTTTCCACGGGTGGATGAGGGAGATATGAGCCGTATGCGCGCCACGTTGGTACGTGGTAATACGCTGGCGGAATTAGCCCGTGAATTTGATTTAGGCGAGTGCCTGCGTTTAGGGCCGGGCGAATTAAAAAGCGGCGGATTTCGTCGGGAGTCCATTCTGGCGGACACCGTGGAAGCGTTAATCGGCGGAGTATTTCTCGATAGCAATATCCAGACCGTCGAGCAGTTAATCCTTAACTGGTATAAAACCCGTCTGGATGAGATAAGTCCGGGCGATAAACAAAAAGATCCTAAAACGCGCTTGCAGGAGTATTTGCAGGGTCGCCATCTGCCGCTGCCATCTTACCTGGTTGTGCAGGTACGCGGCGAGGCGCACGATCAGGAATTTACTATCCACTGCCAGGTCAGCGGCCTGAGCGAACCGGTGGTTGGCACGGGTTCCAGCCGTCGTAAGGCGGAGCAGGCTGCCGCCGAACAGGCGCTGAAAAAACTGGAGTTGGAATGA"}, "NZ_AOXE01000021.1_29": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000040.1_28": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000052.1_137": {"blast_result": {"is_perfect": false, "slen": 699860, "pident": 99.65299999999999, "marker": "NZ_AOXE01000052.1_137", "qseqid": "NZ_AOXE01000052.1_137|2844342487", "qstart": 1, "is_trunc": false, "sseq_msa_gaps": 0, "sseq": "ATGAGCGAGCAGTTAACGGACCAGGTCCTGGTTGAACGGGTCCAGAAGGGAGATCAGAAAGCCTTTAACTTACTGGTAGTGCGCTACCAGCATAAAGTGGCGAGTCTGGTTTCCCGCTATGTGCCATCGGGCGACGTTCCCGATGTCGTACAGGAATCATTTATTAAGGCCTATCGCGCGCTGGATTCTTTCCGGGGGGATAGCGCTTTTTATACCTGGTTGTATCGTATTGCGGTCAATACCGCGAAGAACTACCTGGTTGCGCAGGGGCGTCGTCCGCCTTCCAGTGATGTAGACGCGATTGAAGCAGAAAACTTTGAAAGCGGCGGCGCGCTGAAAGAAATTTCGAACCCTGAGAACTTAATGTTGTCAGAAGAACTGAGACAGATAGTTTTCCGAACTATTGAGTCCCTCCCGGAAGATTTACGTATGGCAATCACCTTACGGGAGCTGGATGGCCTGAGCTATGAAGAGATAGCGGCTATCATGGATTGCCCGGTGGGGACGGTGCGTTCACGTATCTTCCGGGCGCGGGAAGCTATTGATAATAAAGTTCAACCGCTTATCAGGCGTTGA", "bitscore": 1053, "sseq_msa_p_gaps": 0.0, "evalue": 0.0, "gapopen": 0, "send": 309818, "has_perfect_match": false, "allele": 2844342487, "sstart": 309243, "allele_name": 1648892875, "start_idx": 309242.0, "qend": 576, "needs_revcomp": false, "is_extended": 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"blast_result": null}, "NZ_AOXE01000059.1_333": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000059.1_335": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000025.1_13": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000072.1_42": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000059.1_67": {"blast_result": {"is_perfect": false, "slen": 699860, "pident": 98.94200000000001, "marker": "NZ_AOXE01000059.1_67", "qseqid": "NZ_AOXE01000059.1_67|1749033826", "qstart": 1, "is_trunc": false, "sseq_msa_gaps": 0, "sseq": "ATGATCAATTCGCCCAGAGTGTGTATTCAGGTGCAAAGCGTCTACATTGAGGCGCAATCCTCACCTGACGATGAACGTTACGTTTTTGCCTATACCGTAACCATCCGCAATCTGGGTCGGGCGCCAGTGCAGCTATTGGGCCGCTACTGGCTGATTACCAATGGTCATGGCCGTGAAACTGAAGTCCAGGGCAAAGGTGTGGTTGGCGTCCAGCCGCGCATTGCGCCTGGCGAAGAGTATCAGTACACCGGCGGCGCGGTAATTGAAACGCCGCTGGGCACCATGCAGGGTCATTACGAAATGATCGATGAAAATGGCGACGCCTTTACCATCGACATTCCCGTGTTTCGACTCGCCGTCCCTACACTCATTCACTAA", "bitscore": 676, "sseq_msa_p_gaps": 0.0, 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"NZ_AOXE01000059.1_66", "qseqid": "NZ_AOXE01000059.1_66|2424781734", "qstart": 1, "is_trunc": false, "sseq_msa_gaps": 0, "sseq": "ATGAATAATCGAGTCCATCAGGGCCATTTAGCCCGTAAACGCTTCGGGCAAAACTTTCTCAACGATCGGTTTGTGATCGACAGTATTGTTTCTGCTATTAATCCGCAAAAAGGCCAGGCGATGGTTGAAATCGGCCCCGGTCTGGCGGCGCTGACGGAGCCGGTCGGCGAACGACTGGATAAGCTCACGGTCATTGAACTTGACCGCGATCTGGCGGCGCGTTTGCAAACCCATCCGTTTTTAGGGCCGAAGCTGACTATTTATCAGCAGGACGCCATGACCATGAACTTTGGCGAACTGTCTGCGCAGTTGGGCCAGCCGCTGCGTGTGTTCGGCAATCTGCCCTATAATATCTCCACCCCGCTGATGTTCCATCTCTTTAGCTATACTGATGCCATTGCCGACATGCACTTTATGTTGCAAAAAGAAGTGGTAAATCGTCTGGTTGCAGGGCCGAACAGCAAAGCGTATGGTCGTTTAAGCGTGATGGCGCAATATTACTGTCAGGTGATCCCGGTGCTTGAAGTGCCGCCATCCGCCTTCACGCCGCCGCCCAAAGTGGACTCCGCCGTGGTGCGTCTGGTTCCACACGCAACGATGCCTTACCCGGTTAAAGATATTCGCGTGTTGAGCCGTATTACCACCGAGGCCTTTAACCAGCGCCGTAAAACGATCCGTAATAGTCTCGGCAATCTTTTTAGCGTTGAGACGTTGACGGAAATGGGTATTGACCCGGCAATGCGCGCGGAAAATATCTCTGTCGCGCAGTACTGCCAGATGGCCAACTATCTGTCGGAAAACGCGCCTTTGAAGGAGAGTTAA", "bitscore": 1502, "sseq_msa_p_gaps": 0.0, 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"ATGAATAATCGAGTCCATCAGGGCCATTTAGCCCGTAAACGCTTCGGGCAAAACTTTCTCAACGATCGGTTTGTGATCGACAGTATTGTTTCTGCTATTAATCCGCAAAAAGGCCAGGCGATGGTTGAAATCGGCCCCGGTCTGGCGGCGCTGACGGAGCCGGTCGGCGAACGACTGGATAAGCTCACGGTCATTGAACTTGACCGCGATCTGGCGGCGCGTTTGCAAACCCATCCGTTTTTAGGGCCGAAGCTGACTATTTATCAGCAGGACGCCATGACCATGAACTTTGGCGAACTGTCTGCGCAGTTGGGCCAGCCGCTGCGTGTGTTCGGCAATCTGCCCTATAATATCTCCACCCCGCTGATGTTCCATCTCTTTAGCTATACTGATGCCATTGCCGACATGCACTTTATGTTGCAAAAAGAAGTGGTAAATCGTCTGGTTGCAGGGCCGAACAGCAAAGCGTATGGTCGTTTAAGCGTGATGGCGCAATATTACTGTCAGGTGATCCCGGTGCTTGAAGTGCCGCCATCCGCCTTCACGCCGCCGCCCAAAGTGGACTCCGCCGTGGTGCGTCTGGTTCCACACGCAACGATGCCTTACCCGGTTAAAGATATTCGCGTGTTGAGCCGTATTACCACCGAGGCCTTTAACCAGCGCCGTAAAACGATCCGTAATAGTCTCGGCAATCTTTTTAGCGTTGAGACGTTGACGGAAATGGGTATTGACCCGGCAATGCGCGCGGAAAATATCTCTGTCGCGCAGTACTGCCAGATGGCCAACTATCTGTCGGAAAACGCGCCTTTGAAGGAGAGTTAA"}, "NZ_AOXE01000061.1_3": {"seq": null, "name": null, "blast_result": null}, "NZ_AOYX01000092.1_135": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000059.1_60": {"blast_result": {"is_perfect": false, "slen": 699860, "pident": 99.209, "marker": "NZ_AOXE01000059.1_60", "qseqid": "NZ_AOXE01000059.1_60|4039900630", "qstart": 1, "is_trunc": false, "sseq_msa_gaps": 0, "sseq": "ATGCCTTTTACACTTGGTCAACGCTGGATCAGCGATACAGAAAGCGAGCTGGGACTTGGAACCGTTGTTGCGATGGATGCGCGAACCGTCACCTTACTTTTCCCGTCCACGGGGGAAAACCGCCTGTATGCGCGCAGTGATTCTCCCGTGACCCGCGTCATGTTCAACCCTGGCGATACGATTACAAGCCATGAAGGCTGGCAGCTACATATCGATGAAGTAAAAGAAGAAAATGGCCTGCTTGTTTATGTCGGCACCCGCCTGGATACCGAAGAAACCAATGTGACGTTGCGCGAAGTTCTGCTCGACAGCAAGTTGGTTTTCAGTAAGCCCCAGGATCGTCTGTTCGCCGGTCAAATCGATCGAATGGATCGGTTCGCGCTGCGCTATCGCGCCCGTAAATTTCAGAGCGAGCAGTACCGGATGCCATACAGCGGCCTGCGCGGTCAGCGGACCAACCTGATCCCGCATCAGCTTAATATCGCTCATGATGTGGGTCGTCGCCACGCGCCGCGCGTACTGCTGGCGGATGAAGTGGGCTTAGGTAAAACCATTGAAGCCGGGATGATTCTGCATCAACAGTTATTATCCGGCGCGGCGGAACGCGTATTGATCATCGTTCCGGAAACCCTGCAACACCAGTGGCTGGTAGAAATGCTGCGCCGTTTCAACCTGCGCTTCGCGCTGTTCGATGACGAACGCTATACCGAAGCGCAGCACGACGCGTATAACCCGTTTGAAACCGAACAACTGGTGATCTGCTCGCTGGATTTCGCCCGCCGCAATAAGCAGCGTCTGGAACATTTGTGCGACGCCGAGTGGGATTTGCTGGTGGTCGACGAAGCGCATCATCTGGTGTGGAGCACCGATGCGCCGAGCCGTGAATATATGGCCATCGAACAGTTAGCTGAACGCGTGCCGGGCGTGCTGCTGCTGACCGCCACGCCAGAACAGCTGGGGATGGAAAGCCATTTCGCCCGTCTGCGCCTGCTCGATCCGAACCGTTTCCACGATTTCGAACAGTTTGTCGAAGAACAGAAAAACTACCGCCCTGTCGCCGATGCGGTGGCCATGCTGCTGGCGGGCAATAAACTCAGCAACGACGAACTGAACAGACTGGGCGATCTGATCGGCGAACAGGATATTGAACCGCTGTTACAGGCCGCTAATAGCGATCGCGACGACGCGCAGGCCGCCCGTGATGAGCTGGTGTCGATGCTGATGGATCGCCACGGTACCAGCCGCGTTCTGTTCCGCAACACCCGTAACGGCGTCAAGGGGTTCCCGAAACGTGAACTGCATACGGTAAAACTGCCGCTGCCGACCCAGTATCAGACCGCCATTAAGGTCTCCGGCATTATGGGCGCGCGTAAAAGCGCGGAAGATCGCGCCCGCGATATGCTCTATCCGGAACAAATTTATCAGGAGTTCGAAGGCGATACCGGCACCTGGTGGAACTTCGACCCACGCGTTGAGTGGCTGATGGGCTATCTGACCAGCCATCGTTCGCAAAAAGTGCTGGTGATCTGCGCCAAGGCGACCACCGCGTTACAGCTGGAGCAGGTGCTGCGCGAACGCGAAGGCATCCGCGCCGCCGTGTTCCATGAGGGCATGTCGATTATCGAACGCGACCGCGCCGCCGCCTGGTTCGCCGAAGAAGATACCGGCGCGCAGGTGCTGTTATGTTCCGAAATCGGCTCCGAAGGACGTAACTTCCAGTTTGCCAGCAATCTGGTGATGTTCGACTTGCCGTTTAACCCGGATCTGCTGGAACAGCGTATTGGTCGTCTGGATCGTATCGGCCAGGCGCATGATATCCAGATCCACGTCCCGTACCTGGAAAAAACCGCCCAGTCGGTGCTGGTTCGCTGGTATCACGAAGGGCTGGACGCCTTTGAGCACACTTGCCCGACCGGTCGCGCGATTTATGATTCAGCCTACGCCAGTCTGATTAACTATCTGGCCGCGCCTGAAGAAACCGACGGGTTTGACGATCTGATCAAATCCTGCCGCGAACAACATGAAGCGCTAAAAGCCCAGTTAGAACAGGGCCGCGACCGCCTGCTGGAGATCAACTCCAACGGTGGTGAAAAAGCCCAACAGCTTGCACAAAGCATTGAAGAACAGGACGACGACACCAACCTGATCGCGTTCGCCATGAACCTGTTCGATATCGTCGGCATTAACCAGGATGATCGCGGCGACAACCTGATCGTGCTGACGCCGTCCGACCACATGTTGGTGCCGGATTTCCCCGGCCTGCCGGAAGACGGTTGTACTATCACGTTTGAACGTGACGTAGCCCTGTCTCGCGAAGATGCGCAGTTTATTACCTGGGAACATCCGCTCATCCGTAACGGACTGGATCTGATCCTCTCCGGCGATACCGGCAGCAGCACCATTTCGCTGTTGAAAAATAAAGCGCTGCCCGTCGGCACGCTGCTGGTCGAACTGGTTTACGTCGTGGAAGCGCAGGCGCCGAAACAGCTACAACTGAACCGCTTCCTGCCGCCGACGCCGGTACGTATGCTGTTAGATAAAAACGGCAACAATCTGGCCGCCCAGGTCGAGTTTGAAACCTTCAACCGCCAGCTCAGCGCCGTGAATCGCCACACCGGTAGCAAACTGGTGAACGCCGTTCAACAGGACGTCCACGCCATTTTGCAACTGGGCGAGACGCAGATTGAACAGTCCGCCAGAGCGCTGATTGATAACGCGCGCCGCGAGGCAGATGAAAAACTGTCCGGGGAACTGTCGCGTCTGGAAGCGCTGCGCGCCGTCAACCCGAACATCCGCGACGACGAACTTGCCGCTATCGACAGCAACCGTCAGCAGGTGCTGGAAAGCCTGAATCAGGCAGGCTGGCGTCTGGACGCGCTGCGTCTTATCGTCGTCACGCACCAATAA", 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"ATGCCTTTTACACTTGGTCAACGCTGGATCAGCGATACAGAAAGCGAGCTGGGACTTGGAACCGTTGTTGCGATGGATGCGCGAACCGTCACCTTACTTTTCCCGTCCACGGGGGAAAACCGCCTGTATGCGCGCAGTGATTCTCCCGTGACCCGCGTCATGTTCAACCCTGGCGATACGATTACAAGCCATGAAGGCTGGCAGCTACATATCGATGAAGTAAAAGAAGAAAATGGCCTGCTTGTTTATGTCGGCACCCGCCTGGATACCGAAGAAACCAATGTGACGTTGCGCGAAGTTCTGCTCGACAGCAAGTTGGTTTTCAGTAAGCCCCAGGATCGTCTGTTCGCCGGTCAAATCGATCGAATGGATCGGTTCGCGCTGCGCTATCGCGCCCGTAAATTTCAGAGCGAGCAGTACCGGATGCCATACAGCGGCCTGCGCGGTCAGCGGACCAACCTGATCCCGCATCAGCTTAATATCGCTCATGATGTGGGTCGTCGCCACGCGCCGCGCGTACTGCTGGCGGATGAAGTGGGCTTAGGTAAAACCATTGAAGCCGGGATGATTCTGCATCAACAGTTATTATCCGGCGCGGCGGAACGCGTATTGATCATCGTTCCGGAAACCCTGCAACACCAGTGGCTGGTAGAAATGCTGCGCCGTTTCAACCTGCGCTTCGCGCTGTTCGATGACGAACGCTATACCGAAGCGCAGCACGACGCGTATAACCCGTTTGAAACCGAACAACTGGTGATCTGCTCGCTGGATTTCGCCCGCCGCAATAAGCAGCGTCTGGAACATTTGTGCGACGCCGAGTGGGATTTGCTGGTGGTCGACGAAGCGCATCATCTGGTGTGGAGCACCGATGCGCCGAGCCGTGAATATATGGCCATCGAACAGTTAGCTGAACGCGTGCCGGGCGTGCTGCTGCTGACCGCCACGCCAGAACAGCTGGGGATGGAAAGCCATTTCGCCCGTCTGCGCCTGCTCGATCCGAACCGTTTCCACGATTTCGAACAGTTTGTCGAAGAACAGAAAAACTACCGCCCTGTCGCCGATGCGGTGGCCATGCTGCTGGCGGGCAATAAACTCAGCAACGACGAACTGAACAGACTGGGCGATCTGATCGGCGAACAGGATATTGAACCGCTGTTACAGGCCGCTAATAGCGATCGCGACGACGCGCAGGCCGCCCGTGATGAGCTGGTGTCGATGCTGATGGATCGCCACGGTACCAGCCGCGTTCTGTTCCGCAACACCCGTAACGGCGTCAAGGGGTTCCCGAAACGTGAACTGCATACGGTAAAACTGCCGCTGCCGACCCAGTATCAGACCGCCATTAAGGTCTCCGGCATTATGGGCGCGCGTAAAAGCGCGGAAGATCGCGCCCGCGATATGCTCTATCCGGAACAAATTTATCAGGAGTTCGAAGGCGATACCGGCACCTGGTGGAACTTCGACCCACGCGTTGAGTGGCTGATGGGCTATCTGACCAGCCATCGTTCGCAAAAAGTGCTGGTGATCTGCGCCAAGGCGACCACCGCGTTACAGCTGGAGCAGGTGCTGCGCGAACGCGAAGGCATCCGCGCCGCCGTGTTCCATGAGGGCATGTCGATTATCGAACGCGACCGCGCCGCCGCCTGGTTCGCCGAAGAAGATACCGGCGCGCAGGTGCTGTTATGTTCCGAAATCGGCTCCGAAGGACGTAACTTCCAGTTTGCCAGCAATCTGGTGATGTTCGACTTGCCGTTTAACCCGGATCTGCTGGAACAGCGTATTGGTCGTCTGGATCGTATCGGCCAGGCGCATGATATCCAGATCCACGTCCCGTACCTGGAAAAAACCGCCCAGTCGGTGCTGGTTCGCTGGTATCACGAAGGGCTGGACGCCTTTGAGCACACTTGCCCGACCGGTCGCGCGATTTATGATTCAGCCTACGCCAGTCTGATTAACTATCTGGCCGCGCCTGAAGAAACCGACGGGTTTGACGATCTGATCAAATCCTGCCGCGAACAACATGAAGCGCTAAAAGCCCAGTTAGAACAGGGCCGCGACCGCCTGCTGGAGATCAACTCCAACGGTGGTGAAAAAGCCCAACAGCTTGCACAAAGCATTGAAGAACAGGACGACGACACCAACCTGATCGCGTTCGCCATGAACCTGTTCGATATCGTCGGCATTAACCAGGATGATCGCGGCGACAACCTGATCGTGCTGACGCCGTCCGACCACATGTTGGTGCCGGATTTCCCCGGCCTGCCGGAAGACGGTTGTACTATCACGTTTGAACGTGACGTAGCCCTGTCTCGCGAAGATGCGCAGTTTATTACCTGGGAACATCCGCTCATCCGTAACGGACTGGATCTGATCCTCTCCGGCGATACCGGCAGCAGCACCATTTCGCTGTTGAAAAATAAAGCGCTGCCCGTCGGCACGCTGCTGGTCGAACTGGTTTACGTCGTGGAAGCGCAGGCGCCGAAACAGCTACAACTGAACCGCTTCCTGCCGCCGACGCCGGTACGTATGCTGTTAGATAAAAACGGCAACAATCTGGCCGCCCAGGTCGAGTTTGAAACCTTCAACCGCCAGCTCAGCGCCGTGAATCGCCACACCGGTAGCAAACTGGTGAACGCCGTTCAACAGGACGTCCACGCCATTTTGCAACTGGGCGAGACGCAGATTGAACAGTCCGCCAGAGCGCTGATTGATAACGCGCGCCGCGAGGCAGATGAAAAACTGTCCGGGGAACTGTCGCGTCTGGAAGCGCTGCGCGCCGTCAACCCGAACATCCGCGACGACGAACTTGCCGCTATCGACAGCAACCGTCAGCAGGTGCTGGAAAGCCTGAATCAGGCAGGCTGGCGTCTGGACGCGCTGCGTCTTATCGTCGTCACGCACCAATAA"}, "NZ_AOXE01000009.1_17": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000068.1_76": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXI01000005.1_72": {"blast_result": {"is_perfect": false, "slen": 699860, "pident": 99.85700000000001, "marker": "NZ_AOXI01000005.1_72", "qseqid": "NZ_AOXI01000005.1_72|1457206149", "qstart": 1, "is_trunc": false, "sseq_msa_gaps": 0, "sseq": "ATGAAATCAATCAAATCATTAATGCCTGAGGAGGCTCACGTGCAGTGTAAAGGTTTTCTGTTTGATCTGGATGGAACGTTGGTTGACTCATTACCTGCCGTCGAACGCGCGTGGTGTAGCTGGGCCGATCGTTTTAACCTTGCTCATGATGAGGTGCTGGGCTTTATTCATGGCAAACAGGCGATCACCTCGTTGCGGCATTTTATGGCGGGTAAATCGGAGGCGGAAATTGCCGCTGAGTTTACGCGCCTGGAGCAAATAGAAGCCACTGAAACCGCAGGGATCACCGCGTTGCCGGGGGCAGTCGATTTACTCAATCACCTGAATAAAGCGGGCATTCCGTGGGCTATCGTCACCTCCGGTTCAATGCCGGTCGCGCGTGCGCGCCATCAGGTCGCGGGCCTTCCAGCGCCAGAGGTGTTTGTCACCGCCGAACGAGTCAAACGCGGCAAACCGGAGCCGGATGCGTATTTGCTGGGCGCACAACTGCTTGGCCTGGCCCCTCAGGAGTGCGTCGTAGTAGAAGATGCCCCGGCTGGCGTGCTGTCCGGACTGGCTGCGGGCTGCCACGTCATTGCGGTCAATGCGCCGGCCGACACGCCGCGTCTGGCGGATGTTGATTTTGCGTTGGATAGCCTGACGCAATTATCGGTCGCTAAACAACCAAACGGCGATGTGGTGGTGTTAAGAAAGACCTGA", "bitscore": 1286, "sseq_msa_p_gaps": 0.0, "evalue": 0.0, "gapopen": 0, "send": 603793, "has_perfect_match": false, "allele": 1457206149, "sstart": 603095, "allele_name": 1007978530, "start_idx": 603094.0, "qend": 699, "needs_revcomp": false, "is_extended": false, "mismatch": 1, "coverage": 1.0, 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null, "blast_result": null}, "NZ_AOXE01000047.1_57": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000059.1_69": {"blast_result": {"is_perfect": false, "slen": 699860, "pident": 99.583, "marker": "NZ_AOXE01000059.1_69", "qseqid": "NZ_AOXE01000059.1_69|616419627", "qstart": 1, "is_trunc": false, "sseq_msa_gaps": 0, "sseq": "ATGATCAGTCTGATTGCGGCGTTAGCGGTGGATCGCGTCATCGGTATGGAAAACGCCATGCCGTGGAACCTGCCTGCCGATCTCGCATGGTTTAAACGTAACACGTTAAATAAACCTGTCGTCATGGGACGTCACACCTGGGAGTCCATCGGACGCCCCTTACCGGGACGTAAAAATATTATTATCAGCAGCCAGCCGGGCACCGACGATCGCGTGCAGTGGGTGAAGTCTGTCGATGAGGCGATTGCCGCTTGCGGCGATGCGCCGGAAATTATGGTCATTGGCGGCGGGCGCGTGTACGAGCAGTTCCTGCCAAAGGCGCAGAAGCTTTATCTGACGCATATTGATGCGGAAGTCGAAGGCGATACCCATTTTCCGGATTATGAACCGGATGACTGGGAATCGGTATTCAGTGAGTTTCACGATGCCGACGCGCAGAATTCTCACAGCTATTGTTTCGAGATTCTGGAGCGTCGTTAA", "bitscore": 876, "sseq_msa_p_gaps": 0.0, "evalue": 0.0, "gapopen": 0, "send": 101123, "has_perfect_match": false, "allele": 616419627, "sstart": 100644, "allele_name": 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"qseqid": "NZ_AOXE01000059.1_68|3822726594", "qstart": 1, "is_trunc": false, "sseq_msa_gaps": 0, "sseq": "ATGGCAACTTATCTCATCGGCGACGTTCACGGTTGCTACGACGAACTGATCGCCTTATTACAGCAAGTGGAATTTACGCCAGATACAGACACTCTATGGCTGACTGGCGATTTGGTCGCCCGCGGTCCCGGTTCGCTGGACGTGTTACGCTACGTCAAATCGCTTGGCAATAGCGTGCGTTTGGTGCTGGGGAATCACGATTTACACCTGTTGGCCGTATTCGCCGGGATTAGCCGCAACAAACCTAAAGACCGGCTGACCCCGCTTCTTGAAGCGCCGGACGCCGATGAGCTGTTGAATTGGTTACGCCGTCAGCCGCTGTTGCAGGTAGATGAAGAGAAAAAGCTGGTCATGGCGCATGCGGGTATTACCCCACAGTGGGATTTGCAGACGGCAAAAGAGTGCGCCCGCGATGTTGAAGCGGTGCTGTCGAGCGACTCGTACCCGTTTTTCCTCGACGCGATGTATGGCGATATGCCGAATAACTGGTCGCCGGAGTTAAGCGGTCTGGCGCGGCTACGCTTTATTACTAATGCCTTTACCCGTATGCGTTACTGCTTTCCTAACGGTCAACTGGATATGTACAGCAAAGCGTCGCCGGAAAATGCCCCTGCGCCGCTGAAGCCGTGGTTCGCCATTCCGGGACCGGTGAGCGAGGCTTACAGTATTGCTTTCGGGCACTGGGCGTCGCTGGAAGGGAAAGGGACGCCAGAAGGTATTTACGCGCTGGATACCGGCTGCTGCTGGGGCGGGGAGTTAACCTGTTTACGTTGGGAAGATAAACAGTATTTTGTGCAGCCGTCAAACCGCCAGATGGATATGGGCGAAGGCGAAGCGGTCAACGCCTGA", "bitscore": 1524, "sseq_msa_p_gaps": 0.0, "evalue": 0.0, "gapopen": 0, "send": 101219, "has_perfect_match": false, "allele": 3822726594, "sstart": 102067, "allele_name": 3016847250, "start_idx": 101218.0, "qend": 849, "needs_revcomp": true, "is_extended": false, "mismatch": 8, "coverage": 1.0, "too_many_gaps": false, "end_idx": 102066.0, "trunc": false, "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "qlen": 849, "is_match": true, "length": 849}, "name": 3016847250, "seq": "ATGGCAACTTATCTCATCGGCGACGTTCACGGTTGCTACGACGAACTGATCGCCTTATTACAGCAAGTGGAATTTACGCCAGATACAGACACTCTATGGCTGACTGGCGATTTGGTCGCCCGCGGTCCCGGTTCGCTGGACGTGTTACGCTACGTCAAATCGCTTGGCAATAGCGTGCGTTTGGTGCTGGGGAATCACGATTTACACCTGTTGGCCGTATTCGCCGGGATTAGCCGCAACAAACCTAAAGACCGGCTGACCCCGCTTCTTGAAGCGCCGGACGCCGATGAGCTGTTGAATTGGTTACGCCGTCAGCCGCTGTTGCAGGTAGATGAAGAGAAAAAGCTGGTCATGGCGCATGCGGGTATTACCCCACAGTGGGATTTGCAGACGGCAAAAGAGTGCGCCCGCGATGTTGAAGCGGTGCTGTCGAGCGACTCGTACCCGTTTTTCCTCGACGCGATGTATGGCGATATGCCGAATAACTGGTCGCCGGAGTTAAGCGGTCTGGCGCGGCTACGCTTTATTACTAATGCCTTTACCCGTATGCGTTACTGCTTTCCTAACGGTCAACTGGATATGTACAGCAAAGCGTCGCCGGAAAATGCCCCTGCGCCGCTGAAGCCGTGGTTCGCCATTCCGGGACCGGTGAGCGAGGCTTACAGTATTGCTTTCGGGCACTGGGCGTCGCTGGAAGGGAAAGGGACGCCAGAAGGTATTTACGCGCTGGATACCGGCTGCTGCTGGGGCGGGGAGTTAACCTGTTTACGTTGGGAAGATAAACAGTATTTTGTGCAGCCGTCAAACCGCCAGATGGATATGGGCGAAGGCGAAGCGGTCAACGCCTGA"}, "NZ_AOXE01000033.1_30": {"blast_result": {"is_perfect": false, "slen": 699860, "pident": 99.28299999999999, "marker": "NZ_AOXE01000033.1_30", "qseqid": "NZ_AOXE01000033.1_30|3262632763", "qstart": 1, "is_trunc": false, "sseq_msa_gaps": 0, "sseq": "GTGATTAGCGATATCAGAAAAGATGCTGAAGTACGCATGGAAAAATGCGTTGAAGCGTTCAAAACCCAAATCAGCAAAGTGCGCACGGGTCGTGCTTCTCCCAGCCTGCTGGATGGTATTGTCGTAGAATACTATGGCACTCCGACCCCGCTGCGCCAGTTGGCAAGCGTAACGGTAGAAGACTCCCGTACCTTAAAAATTAACGTGTTTGACCGTTCTATGGGGCCAGCCGTTGAAAAAGCGATCATGGCGTCAGACCTCGGTTTGAATCCAAGCTCTGCGGGCACCGATATTCGCGTTCCGCTGCCGCCGCTGACCGAAGAACGTCGTAAAGATCTGACGAAAATTGTCCGTGGAGAAGCGGAGCAGGCGCGTGTCGCCGTACGTAACGTCCGCCGTGATGCGAACGATAAAGTAAAAGCTCTGCTGAAAGATAAAGCGATCAGTGAAGATGACGATCGTCGCTCTCAGGAAGAAGTACAGAAAATGACCGACGCGGCAATTAAGAAAGTGGATGCGGCGTTGGCAGATAAAGAAGCAGAACTGATGCAGTTCTGA", "bitscore": 1009, "sseq_msa_p_gaps": 0.0, "evalue": 0.0, "gapopen": 0, "send": 254580, "has_perfect_match": false, "allele": 3262632763, "sstart": 254023, "allele_name": 1062106200, "start_idx": 254022.0, "qend": 558, "needs_revcomp": false, "is_extended": false, "mismatch": 4, "coverage": 1.0, "too_many_gaps": false, "end_idx": 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"NZ_AOXE01000033.1_34": {"blast_result": {"is_perfect": false, "slen": 699860, "pident": 99.49700000000001, "marker": "NZ_AOXE01000033.1_34", "qseqid": "NZ_AOXE01000033.1_34|774863803", "qstart": 1, "is_trunc": false, "sseq_msa_gaps": 0, "sseq": "ATGGCTATCTCTATCAAGACATCTGAAGACATCGAAAAAATGCGCGTCGCGGGCCGTCTGGCAGCCGAAGTGCTGGAAATGATCGAACCGTATATCAAACCGGGCGTCACCACCGGCGAACTGGACCGTATCTGTAACGATTACATCGTTAACGAACAACACGCGATCTCCGCCTGCCTCGGCTACCACGGCTATCCGAAATCCGTCTGTATCTCTATTAATGAAGTGGTGTGCCACGGCATTCCGGATGACGCTAAACATCTGAAAGATGGTGATATCGTCAACATCGACGTGACCGTGATTAAAGATGAATTCCACGGCGATACCTCAAAGATGTTTATCGTCGGCAAACCGACTATTCTGGGCGAGCGTCTGTGCCGCGTCACGCAAGAGAGCCTGTATCTGGGCATCAAAATGGTGAAACCGGGCATCCGCCTGCGCACCATTGGCGCCGCCATCCAGAAATATGCCGAAGGCGAAGGTTTCTCCGTGGTACGTGAATACTGCGGACACGGTATTGGTCGCGGCTTCCATGAAGAACCGCAGGTGCTGCATTATGATGCAGACGATGGTGGCGTCGTGTTGCAGCCTGGCATGACCTTTACCATTGAACCGATGCTGAATGCCGGGGATTACCGTATCCGCACCATGAAAGACGGCTGGACGGTAAAAACCAAAGACCGCAGCTTGTCTGCTCAGTACGAGCATACTATTGTGGTAACGGAAAACGGCTGTGAAATTCTGACGCTGCGTAAAGATGACACCATCCCGGCGATCATCACACACGACGAATAA", "bitscore": 1447, "sseq_msa_p_gaps": 0.0, "evalue": 0.0, "gapopen": 0, "send": 249928, "has_perfect_match": false, "allele": 774863803, "sstart": 250722, "allele_name": 3673111880, "start_idx": 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"ATGGCTATCTCTATCAAGACATCTGAAGACATCGAAAAAATGCGCGTCGCGGGCCGTCTGGCAGCCGAAGTGCTGGAAATGATCGAACCGTATATCAAACCGGGCGTCACCACCGGCGAACTGGACCGTATCTGTAACGATTACATCGTTAACGAACAACACGCGATCTCCGCCTGCCTCGGCTACCACGGCTATCCGAAATCCGTCTGTATCTCTATTAATGAAGTGGTGTGCCACGGCATTCCGGATGACGCTAAACATCTGAAAGATGGTGATATCGTCAACATCGACGTGACCGTGATTAAAGATGAATTCCACGGCGATACCTCAAAGATGTTTATCGTCGGCAAACCGACTATTCTGGGCGAGCGTCTGTGCCGCGTCACGCAAGAGAGCCTGTATCTGGGCATCAAAATGGTGAAACCGGGCATCCGCCTGCGCACCATTGGCGCCGCCATCCAGAAATATGCCGAAGGCGAAGGTTTCTCCGTGGTACGTGAATACTGCGGACACGGTATTGGTCGCGGCTTCCATGAAGAACCGCAGGTGCTGCATTATGATGCAGACGATGGTGGCGTCGTGTTGCAGCCTGGCATGACCTTTACCATTGAACCGATGCTGAATGCCGGGGATTACCGTATCCGCACCATGAAAGACGGCTGGACGGTAAAAACCAAAGACCGCAGCTTGTCTGCTCAGTACGAGCATACTATTGTGGTAACGGAAAACGGCTGTGAAATTCTGACGCTGCGTAAAGATGACACCATCCCGGCGATCATCACACACGACGAATAA"}, "NZ_AOXE01000081.1_195": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000081.1_262": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000033.1_38": {"blast_result": {"is_perfect": false, "slen": 699860, "pident": 99.742, "marker": "NZ_AOXE01000033.1_38", "qseqid": "NZ_AOXE01000033.1_38|1182368253", "qstart": 1, "is_trunc": false, "sseq_msa_gaps": 0, "sseq": "ATGTATGACAATCTAAAAAGTCTGGGCATTACCAATCCTGAGGAAATCGATCGTTACAGCCTGCGGCAAGAAGCCAATAACGATATCCTGAAAATCTATTTTCAAAAGGATAGAGGTGAATTCTTTGCTAAAAGCGTGAAGTTTAAGTATCCACGCCAGCGTAAAACGGTGGTGGCTGATGGCATCGGTCAGGGTTATAAAGAAGTACAGGAGATTAGCCCTAACCTACGCTATGTGATTGACGAGCTGGACCAAATCTGCCAGCGCGACCGCTCAGAACTCGATCTCAAACGTAAGATCCTCGACGACTTGCGCCATCTGGAAAGCGTCGTCGCGAATAAGATCAGTGAAATCGAAGCCGATCTGGACAAGCTTACCCGTAAGTAA", "bitscore": 710, "sseq_msa_p_gaps": 0.0, "evalue": 0.0, "gapopen": 0, "send": 244317, "has_perfect_match": false, "allele": 1182368253, "sstart": 244703, "allele_name": 1314942441, "start_idx": 244316.0, "qend": 387, "needs_revcomp": true, "is_extended": false, "mismatch": 1, "coverage": 1.0, "too_many_gaps": false, "end_idx": 244702.0, "trunc": false, "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "qlen": 387, "is_match": true, "length": 387}, "name": 1314942441, "seq": "ATGTATGACAATCTAAAAAGTCTGGGCATTACCAATCCTGAGGAAATCGATCGTTACAGCCTGCGGCAAGAAGCCAATAACGATATCCTGAAAATCTATTTTCAAAAGGATAGAGGTGAATTCTTTGCTAAAAGCGTGAAGTTTAAGTATCCACGCCAGCGTAAAACGGTGGTGGCTGATGGCATCGGTCAGGGTTATAAAGAAGTACAGGAGATTAGCCCTAACCTACGCTATGTGATTGACGAGCTGGACCAAATCTGCCAGCGCGACCGCTCAGAACTCGATCTCAAACGTAAGATCCTCGACGACTTGCGCCATCTGGAAAGCGTCGTCGCGAATAAGATCAGTGAAATCGAAGCCGATCTGGACAAGCTTACCCGTAAGTAA"}, "NZ_AOXE01000004.1_74": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000034.1_103": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000081.1_190": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000081.1_59": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000061.1_12": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000034.1_126": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000034.1_127": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000004.1_35": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000059.1_437": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000072.1_83": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000059.1_435": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000036.1_43": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000085.1_62": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000021.1_38": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000081.1_79": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000085.1_20": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000031.1_70": {"blast_result": {"is_perfect": true, "slen": 699860, "pident": 100.0, "marker": "NZ_AOXE01000031.1_70", "qseqid": "NZ_AOXE01000031.1_70|225275747", "qstart": 1, "is_trunc": false, "sseq_msa_gaps": 0, "sseq": "ATGATCTATTTATGGACATTTCTTGCAATAAGTATACTTGCCGTGAGTGGCTATATCGGTCAGGTGATGGGGGCTTTTTCTGCGGTTTCTTCTTTTACGGGAATGGTTATCCTTGCCGCGCTGATTTATTTACTCAATGTATGGCTGCAGGATGGCGATGACATCGTTAGCGGATTATTGCTTTTTCTCGCACCGGCATGTGGGTTAATTATTCGCTTTATGGTGGGATACGGTAAGCGTTAG", "bitscore": 449, "sseq_msa_p_gaps": 0.0, "evalue": 5.959999999999998e-128, "gapopen": 0, "send": 531015, "has_perfect_match": true, "allele": 225275747, "sstart": 530773, "allele_name": 225275747, "start_idx": 530772.0, "qend": 243, "needs_revcomp": false, "is_extended": false, "mismatch": 0, "coverage": 1.0, "too_many_gaps": false, "end_idx": 531014.0, "trunc": false, "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "qlen": 243, "is_match": true, "length": 243}, "name": 225275747, "seq": "ATGATCTATTTATGGACATTTCTTGCAATAAGTATACTTGCCGTGAGTGGCTATATCGGTCAGGTGATGGGGGCTTTTTCTGCGGTTTCTTCTTTTACGGGAATGGTTATCCTTGCCGCGCTGATTTATTTACTCAATGTATGGCTGCAGGATGGCGATGACATCGTTAGCGGATTATTGCTTTTTCTCGCACCGGCATGTGGGTTAATTATTCGCTTTATGGTGGGATACGGTAAGCGTTAG"}, "NZ_AOXE01000036.1_98": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000081.1_62": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000003.1_7": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000059.1_229": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000052.1_128": {"blast_result": {"is_perfect": false, "slen": 699860, "pident": 99.18, "marker": "NZ_AOXE01000052.1_128", "qseqid": "NZ_AOXE01000052.1_128|2816522364", "qstart": 1, "is_trunc": false, "sseq_msa_gaps": 0, "sseq": "ATGGCTGAATTACTGTTAGGCGTCAATATTGACCACATTGCCACGTTACGTAATGCGCGCGGCACCGACTATCCGGATCCGGTACAGGCGGCGTTTATTGCTGAACAGGCAGGCGCGGACGGCATTACCGTACACCTGCGCGAAGATCGTCGCCACATTACCGATCGCGATGTGCGCATTCTGCGTCAGACGCTGCATACGCGTATGAATCTGGAGATGGCGGTGACCGAAGAGATGCTGGCGATCGCCGTAGAAACCAGGCCGCATTTCTGTTGTCTGGTGCCGGAAAAACGCCAGGAAGTCACCACCGAAGGCGGCCTGGATGTGGCCGGACAGCGCGATAAAATGCGTGATGCCTGTGCGCGCCTAGCGGCGGCTGGCATCCAGGTTTCGCTCTTTATCGATGCCGATGAAAGGCAAATCAACGCGGCGGCGGAAGTCGGCGCGCCGTTTATCGAAATCCATACCGGCTGCTATGCCAACGCAGAAACCGATGCGGAACAGGCAAAAGAGCTGGCGCGTATTGCCAGCGCCGCGACCCTGGCGGCCCGTCTGGGGCTAAAAGTAAATGCGGGTCATGGCCTGACCTACCATAACGTCAAAGCTATTGCCGCACTGCCGGAAATGCACGAGCTCAATATCGGTCATGCCATTATTGGTCGGGCGGTGATGACGGGGCTGAAAGAGGCGGTGGCTGAAATGAAACGTTTGATGCTGGAAGCGCGCGGCTAA", "bitscore": 1319, "sseq_msa_p_gaps": 0.0, "evalue": 0.0, "gapopen": 0, "send": 318320, "has_perfect_match": false, "allele": 2816522364, "sstart": 317589, "allele_name": 2110459436, "start_idx": 317588.0, "qend": 732, "needs_revcomp": false, "is_extended": false, 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"ATGGCTGAATTACTGTTAGGCGTCAATATTGACCACATTGCCACGTTACGTAATGCGCGCGGCACCGACTATCCGGATCCGGTACAGGCGGCGTTTATTGCTGAACAGGCAGGCGCGGACGGCATTACCGTACACCTGCGCGAAGATCGTCGCCACATTACCGATCGCGATGTGCGCATTCTGCGTCAGACGCTGCATACGCGTATGAATCTGGAGATGGCGGTGACCGAAGAGATGCTGGCGATCGCCGTAGAAACCAGGCCGCATTTCTGTTGTCTGGTGCCGGAAAAACGCCAGGAAGTCACCACCGAAGGCGGCCTGGATGTGGCCGGACAGCGCGATAAAATGCGTGATGCCTGTGCGCGCCTAGCGGCGGCTGGCATCCAGGTTTCGCTCTTTATCGATGCCGATGAAAGGCAAATCAACGCGGCGGCGGAAGTCGGCGCGCCGTTTATCGAAATCCATACCGGCTGCTATGCCAACGCAGAAACCGATGCGGAACAGGCAAAAGAGCTGGCGCGTATTGCCAGCGCCGCGACCCTGGCGGCCCGTCTGGGGCTAAAAGTAAATGCGGGTCATGGCCTGACCTACCATAACGTCAAAGCTATTGCCGCACTGCCGGAAATGCACGAGCTCAATATCGGTCATGCCATTATTGGTCGGGCGGTGATGACGGGGCTGAAAGAGGCGGTGGCTGAAATGAAACGTTTGATGCTGGAAGCGCGCGGCTAA"}, "NZ_AOXE01000072.1_86": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000059.1_433": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000072.1_60": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000081.1_282": {"seq": null, "name": null, "blast_result": null}, "NZ_AOYX01000060.1_42": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000004.1_14": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000068.1_65": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000004.1_10": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000004.1_12": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000008.1_63": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000073.1_85": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000004.1_68": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000033.1_21": {"blast_result": {"is_perfect": true, "slen": 699860, "pident": 100.0, "marker": "NZ_AOXE01000033.1_21", "qseqid": "NZ_AOXE01000033.1_21|607954140", "qstart": 1, "is_trunc": false, "sseq_msa_gaps": 0, "sseq": "GTGATTGATAAATCCGTCTTTATTCATCCTACCGCCATTGTGGAAGACGGCGCTGTAATTGGCGCTAATGCCCACATTGGTCCCTTTTGTATTGTTGGGCCGCAGGTCGAAATTGGTGAGGGAACCGTACTGAAGTCTCATGTGGTCGTAAATGGTCAAACCAAAATCGGCCGCGACAACGAGATTTATCAGTTTGCCTCCATCGGTGAAGTGAACCAGGATCTGAAATATGCGGGTGAGCCAACCCGTGTGGAAATTGGCGATCGTAACCGCATCCGCGAAAGCGTCACCATTCATCGTGGTACAGTGCAGGGCGGTGGGTTGACGAAGGTGGGTAGCGATAACCTGCTGATGATCAATGCGCATGTCGCACATGATTGTACGGTAGGTAATCGCTGTATCCTCGCCAACAACGCCACGCTGGCGGGGCACGTATCAGTCGATGATTTTGCGATCATCGGCGGTATGACGGCAGTTCATCAATTCTGCATTATCGGTGCGCATGTGATGGTCGGCGGCTGCTCCGGCGTGGCGCAGGATGTCCCTCCGTATGTGATTGCGCAGGGTAACCATGCGACGCCGTTCGGGGTAAATATCGAAGGGCTGAAGCGTCGCGGCTTTAGCCGTGAAGGGCTGGTGGCGATTCGTAATGCCTACAAACTGTTGTACCGCAGTGGTAAAACGCTCGACGAAGCGAAGCTGGAAATCGCTGAACTTGCTGAAAAGCATCCGGAAGTGAAGGCGTTTACCGAGTTCTTTGAGCGTTCAACGCGCGGTCCGATTCGTTAA", "bitscore": 1458, "sseq_msa_p_gaps": 0.0, "evalue": 0.0, "gapopen": 0, "send": 264656, "has_perfect_match": true, "allele": 607954140, "sstart": 263868, "allele_name": 607954140, "start_idx": 263867.0, 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"GTGATTGATAAATCCGTCTTTATTCATCCTACCGCCATTGTGGAAGACGGCGCTGTAATTGGCGCTAATGCCCACATTGGTCCCTTTTGTATTGTTGGGCCGCAGGTCGAAATTGGTGAGGGAACCGTACTGAAGTCTCATGTGGTCGTAAATGGTCAAACCAAAATCGGCCGCGACAACGAGATTTATCAGTTTGCCTCCATCGGTGAAGTGAACCAGGATCTGAAATATGCGGGTGAGCCAACCCGTGTGGAAATTGGCGATCGTAACCGCATCCGCGAAAGCGTCACCATTCATCGTGGTACAGTGCAGGGCGGTGGGTTGACGAAGGTGGGTAGCGATAACCTGCTGATGATCAATGCGCATGTCGCACATGATTGTACGGTAGGTAATCGCTGTATCCTCGCCAACAACGCCACGCTGGCGGGGCACGTATCAGTCGATGATTTTGCGATCATCGGCGGTATGACGGCAGTTCATCAATTCTGCATTATCGGTGCGCATGTGATGGTCGGCGGCTGCTCCGGCGTGGCGCAGGATGTCCCTCCGTATGTGATTGCGCAGGGTAACCATGCGACGCCGTTCGGGGTAAATATCGAAGGGCTGAAGCGTCGCGGCTTTAGCCGTGAAGGGCTGGTGGCGATTCGTAATGCCTACAAACTGTTGTACCGCAGTGGTAAAACGCTCGACGAAGCGAAGCTGGAAATCGCTGAACTTGCTGAAAAGCATCCGGAAGTGAAGGCGTTTACCGAGTTCTTTGAGCGTTCAACGCGCGGTCCGATTCGTTAA"}, "NZ_AOXE01000035.1_13": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000017.1_54": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000033.1_26": {"blast_result": {"is_perfect": 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"ATGCTGAGTATTCTCTGGAATCTGGCTGCATTCATCATCGCACTGGGCGTGCTGATCACTGTGCATGAATTTGGTCATTTCTGGGTTGCCCGGCGCTGCGGTGTGCGAGTTGAGCGCTTTTCCATCGGTTTTGGCAAAGCGCTCTGGCGTCGTACCGATCGGTACGGCACCGAGTATGTCATCGCCCTGATCCCGCTGGGCGGCTACGTCAAAATGCTGGATGAGCGCGCCGAACCGGTAGCGCCGGAATTGCGTCGTCACGCCTTCAATAACAAAACGGTGGGCCAGCGCGCCGCAATTATTGCCGCAGGTCCGGTTGCGAACTTCATTTTTGCTATCTTTGCTTACTGGCTGGTCTTTATCATCGGCGTCCCTGGCGTTCGTCCGGTCATTGGCGAAATAACGCCCAACTCGATTGCTGCGCAGGCGCAAATTGCGCCTGGTACGGAACTTAAAGCCGTTGATGGTATCGAAACCCCTGATTGGGATGCCGTGCGTTTACAACTGGTGTCCAAAATTGGCGATCAGCAGACGACGGTGAGCGTCGCGCCGTTTGGCAGCGACCAGCGGCAGGACAAAACGCTTGATTTACGTCACTGGGCATTTGAGCCTGATAAGCAAGATCCTGTATCTTCTTTAGGGATTCGGCCCCGCGGGCCACAGATTGAACCGGTACTGTCAGAAGTGCAGGCGAATTCCGCAGCCAGTAAAGCGGGTTTGCAAGCAGGCGACAGGATCGTTAAAGTCGATGGTCAGCCGTTAACGCAGTGGATGAAATTCGTGACGTTTGTACGTGATAATCCCGGTAAGCCGTTAGCGTTAGAGATTGAAAGGCAGGGGAGCGCCTTGTCGTTGACGTTAACGCCGGATACGAAATCGGTTAACGGAAAGGCGGAAGGGTTTGCAGGCGTGGTGCCTAAAATTATTCCTCTGCCGGAAGAGTACAAGACTATACGCCAGTATGGGCCTTTTAGCGCCATCCTCGAAGCCACGGATAAGACGTGGCAGTTGATGAAGCTGACGGTCAATATGCTGGGTAAATTGATAACCGGTGATGTGAAACTGAACAACCTCAGTGGGCCGATTTCTATCGCTCAGGGGGCTGGGATGTCAGCGGAGTTCGGGGTGATTTATTACCTGATGTTCCTTGCGCTAATCAGCGTGAACTTAGGGATAATTAACCTGTTTCCGCTGCCCGTTCTTGACGGGGGTCATCTGCTGTTCCTGGCGATTGAAAAGCTTAAGGGCGGGCCGGTATCCGAGCGGGTTCAAGACTTTAGTTATCGCATTGGCTCGATTTTGCTGGTGTTGTTAATGGGGCTTGCACTTTTCAATGATTTCTCTCGGTTGTAA", 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"ATGCTGAGTATTCTCTGGAATCTGGCTGCATTCATCATCGCACTGGGCGTGCTGATCACTGTGCATGAATTTGGTCATTTCTGGGTTGCCCGGCGCTGCGGTGTGCGAGTTGAGCGCTTTTCCATCGGTTTTGGCAAAGCGCTCTGGCGTCGTACCGATCGGTACGGCACCGAGTATGTCATCGCCCTGATCCCGCTGGGCGGCTACGTCAAAATGCTGGATGAGCGCGCCGAACCGGTAGCGCCGGAATTGCGTCGTCACGCCTTCAATAACAAAACGGTGGGCCAGCGCGCCGCAATTATTGCCGCAGGTCCGGTTGCGAACTTCATTTTTGCTATCTTTGCTTACTGGCTGGTCTTTATCATCGGCGTCCCTGGCGTTCGTCCGGTCATTGGCGAAATAACGCCCAACTCGATTGCTGCGCAGGCGCAAATTGCGCCTGGTACGGAACTTAAAGCCGTTGATGGTATCGAAACCCCTGATTGGGATGCCGTGCGTTTACAACTGGTGTCCAAAATTGGCGATCAGCAGACGACGGTGAGCGTCGCGCCGTTTGGCAGCGACCAGCGGCAGGACAAAACGCTTGATTTACGTCACTGGGCATTTGAGCCTGATAAGCAAGATCCTGTATCTTCTTTAGGGATTCGGCCCCGCGGGCCACAGATTGAACCGGTACTGTCAGAAGTGCAGGCGAATTCCGCAGCCAGTAAAGCGGGTTTGCAAGCAGGCGACAGGATCGTTAAAGTCGATGGTCAGCCGTTAACGCAGTGGATGAAATTCGTGACGTTTGTACGTGATAATCCCGGTAAGCCGTTAGCGTTAGAGATTGAAAGGCAGGGGAGCGCCTTGTCGTTGACGTTAACGCCGGATACGAAATCGGTTAACGGAAAGGCGGAAGGGTTTGCAGGCGTGGTGCCTAAAATTATTCCTCTGCCGGAAGAGTACAAGACTATACGCCAGTATGGGCCTTTTAGCGCCATCCTCGAAGCCACGGATAAGACGTGGCAGTTGATGAAGCTGACGGTCAATATGCTGGGTAAATTGATAACCGGTGATGTGAAACTGAACAACCTCAGTGGGCCGATTTCTATCGCTCAGGGGGCTGGGATGTCAGCGGAGTTCGGGGTGATTTATTACCTGATGTTCCTTGCGCTAATCAGCGTGAACTTAGGGATAATTAACCTGTTTCCGCTGCCCGTTCTTGACGGGGGTCATCTGCTGTTCCTGGCGATTGAAAAGCTTAAGGGCGGGCCGGTATCCGAGCGGGTTCAAGACTTTAGTTATCGCATTGGCTCGATTTTGCTGGTGTTGTTAATGGGGCTTGCACTTTTCAATGATTTCTCTCGGTTGTAA"}, "NZ_AOXE01000024.1_38": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000017.1_59": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000068.1_19": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000034.1_111": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000034.1_119": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000021.1_6": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000003.1_37": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000077.1_35": {"seq": null, "name": null, "blast_result": null}, "NC_011149.1_467": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000034.1_113": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000034.1_112": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000003.1_39": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000017.1_4": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000024.1_3": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000004.1_87": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000034.1_106": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000031.1_106": {"blast_result": {"is_perfect": true, "slen": 699860, "pident": 100.0, "marker": "NZ_AOXE01000031.1_106", "qseqid": "NZ_AOXE01000031.1_106|2545200385", "qstart": 1, "is_trunc": false, "sseq_msa_gaps": 0, "sseq": "ATGGTCTGGATTGATTACGCCATTATCGCGGTGATTGCTTTTTCCTGTCTGGTTAGCCTGATCCGCGGCTTTGTTCGTGAAGCGTTATCGCTGGTGACGTGGGGTTGTGCTTTCTTTGTCGCCAGTCACTACTACACTTACCTGTCTGTCTGGTTTACGGGCTTTGAAGACGAACTGGTTCGTAATGGGATTGCTATCGCGGTACTGTTTATCGCGACGCTTATCGTCGGCGCTATCGTGAATTTTGTGATAGGTCAGCTAGTAGAAAAGACCGGCCTGTCGGGAACTGACCGGGTGTTGGGGATCTGTTTCGGCGCACTGCGAGGCGCGCTGATTGTCGCCGCCATTCTGTTCTTCCTTGATACCTTTACCGGCTTGTCGAAAAGCGAAGACTGGAGCAAATCGCAGCTCATCCCGCAGTTCAGCTTCATCATCAGATGGTTCTTTGACTATCTGCAAAGCTCGTCGAGTTTCTTGCCCAGGACGTAA", "bitscore": 904, "sseq_msa_p_gaps": 0.0, "evalue": 0.0, "gapopen": 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null, "name": null, "blast_result": null}, "NZ_AOXE01000059.1_442": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000031.1_102": {"blast_result": {"is_perfect": true, "slen": 699860, "pident": 100.0, "marker": "NZ_AOXE01000031.1_102", "qseqid": "NZ_AOXE01000031.1_102|3969539340", "qstart": 1, "is_trunc": false, "sseq_msa_gaps": 0, "sseq": "ATGGACCTGATCTACTTTATTATTGATTTTATTCTGCACATCGATGTGCATCTGGCGGAGCTGGTCGCGGAGTACGGCGTCTGGGTGTACGCTATTTTGTTTTTGATTCTGTTTTGTGAAACCGGCCTGGTCGTCACGCCGTTCCTGCCGGGCGACTCGCTGCTGTTTGTCGCCGGGGCGCTGGCTTCGCTGGAAACCAACGATCTCAATGTGCATGTCATGGTGGCGTTAATGCTGATCGCCGCAATTGTCGGCGATGCGGTAAATTACACGATTGGTCGACTGTTCGGCGAAAAACTGTTCAGTAATCCGAATTCGAAAATTTTCCGCCGCAGTTATCTGGATAAAACCCACCAGTTTTATGAAAAACACGGCGGTAAAACTATCATTCTCGCTCGCTTCGTGCCGATCGTCAGAACCTTTGCGCCGTTTGTGGCAGGGATGGGGCACATGTCCTATCGGCATTTTGCCGCCTATAACGTCATCGGCGCGCTGCTGTGGGTGCTGCTCTTTACCTACGCCGGTTATTTCTTCGGTACGATACCGTTGATTCAGGATAACCTTAAGCTGCTGATTGTGGGGATTATCGTGGTTTCGATATTACCTGGCGTCATTGAGATTGTCCGGCATAAGCGCGCTGCGTCGCGTGCCGCAAAATAG", "bitscore": 1219, "sseq_msa_p_gaps": 0.0, "evalue": 0.0, "gapopen": 0, "send": 569938, "has_perfect_match": true, "allele": 3969539340, "sstart": 569279, "allele_name": 3969539340, "start_idx": 569278.0, "qend": 660, "needs_revcomp": false, "is_extended": false, "mismatch": 0, "coverage": 1.0, "too_many_gaps": false, "end_idx": 569937.0, "trunc": false, "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "qlen": 660, "is_match": true, "length": 660}, "name": 3969539340, "seq": "ATGGACCTGATCTACTTTATTATTGATTTTATTCTGCACATCGATGTGCATCTGGCGGAGCTGGTCGCGGAGTACGGCGTCTGGGTGTACGCTATTTTGTTTTTGATTCTGTTTTGTGAAACCGGCCTGGTCGTCACGCCGTTCCTGCCGGGCGACTCGCTGCTGTTTGTCGCCGGGGCGCTGGCTTCGCTGGAAACCAACGATCTCAATGTGCATGTCATGGTGGCGTTAATGCTGATCGCCGCAATTGTCGGCGATGCGGTAAATTACACGATTGGTCGACTGTTCGGCGAAAAACTGTTCAGTAATCCGAATTCGAAAATTTTCCGCCGCAGTTATCTGGATAAAACCCACCAGTTTTATGAAAAACACGGCGGTAAAACTATCATTCTCGCTCGCTTCGTGCCGATCGTCAGAACCTTTGCGCCGTTTGTGGCAGGGATGGGGCACATGTCCTATCGGCATTTTGCCGCCTATAACGTCATCGGCGCGCTGCTGTGGGTGCTGCTCTTTACCTACGCCGGTTATTTCTTCGGTACGATACCGTTGATTCAGGATAACCTTAAGCTGCTGATTGTGGGGATTATCGTGGTTTCGATATTACCTGGCGTCATTGAGATTGTCCGGCATAAGCGCGCTGCGTCGCGTGCCGCAAAATAG"}, "NZ_AOXE01000081.1_214": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000052.1_115": {"blast_result": {"is_perfect": false, "slen": 699860, "pident": 99.41, "marker": "NZ_AOXE01000052.1_115", "qseqid": "NZ_AOXE01000052.1_115|1300386794", "qstart": 1, "is_trunc": false, "sseq_msa_gaps": 0, "sseq": "ATGAAAAAGATTGATGCGATTATTAAACCCTTCAAGCTGGACGATGTCCGTGAAGCGCTGGCCGAGGTAGGTATTACCGGTATGACGGTCACTGAAGTCAAAGGCTTTGGCCGTCAAAAAGGCCACACCGAGCTGTATCGCGGCGCGGAATATATGGTGGATTTTCTGCCGAAGGTAAAAATTGAAATCGTTGTGCCTGACGACATCGTGGATACCTGTGTTGATACCATCATTCGTACCGCGCAGACGGGGAAAATCGGCGACGGTAAGATCTTTGTCTTTGATGTCGCCCGCGTTATTCGTATCCGTACTGGCGAAGAAGACGACGCGGCTATCTGA", "bitscore": 616, "sseq_msa_p_gaps": 0.0, "evalue": 7.929999999999998e-178, "gapopen": 0, "send": 337103, "has_perfect_match": false, "allele": 1300386794, "sstart": 336765, "allele_name": 1528212814, "start_idx": 336764.0, "qend": 339, "needs_revcomp": false, "is_extended": false, "mismatch": 2, "coverage": 1.0, "too_many_gaps": false, "end_idx": 337102.0, "trunc": false, "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "qlen": 339, "is_match": true, "length": 339}, "name": 1528212814, "seq": "ATGAAAAAGATTGATGCGATTATTAAACCCTTCAAGCTGGACGATGTCCGTGAAGCGCTGGCCGAGGTAGGTATTACCGGTATGACGGTCACTGAAGTCAAAGGCTTTGGCCGTCAAAAAGGCCACACCGAGCTGTATCGCGGCGCGGAATATATGGTGGATTTTCTGCCGAAGGTAAAAATTGAAATCGTTGTGCCTGACGACATCGTGGATACCTGTGTTGATACCATCATTCGTACCGCGCAGACGGGGAAAATCGGCGACGGTAAGATCTTTGTCTTTGATGTCGCCCGCGTTATTCGTATCCGTACTGGCGAAGAAGACGACGCGGCTATCTGA"}, "NZ_AOXE01000059.1_372": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000068.1_58": {"blast_result": {"is_perfect": false, "slen": 699860, "pident": 87.87899999999999, "marker": "NZ_AOXE01000068.1_58", "qseq_msa_trimmed": 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"sseq_msa_gaps": 211, "sseq": "GGGGAGCGTTAAAAATTCTGTATAATTTTAGTAACATAAAAT-AAAAAAGAATGGCACATGTCCCATCCCTTCGATTTCGACAAAGCACTTAAAGCCCT", "bitscore": 115, "sseq_msa_p_gaps": 0.2336655592469546, "evalue": 8.609999999999999e-27, "gapopen": 1, "send": 543113, "has_perfect_match": false, "qseq_msa": 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Ty2, complete genome", "qlen": 801, "is_match": false, "sseq_msa_trimmed": "atgtaccgttctatagaaaat-----------------------------cggtatcgtgtcttctt------------cgttaaaaaccaggacgacaagagagat---tttcatttttatccctgaagataatgaatctggaatagataaagccgcataccaggctaattgccgagaaagtgatgagggtaaccaatggtggcaaagaacattggtcagccatccatccaacaacagcgctcagtgttcccatgaatcccatatacat-catgtagagaattgcagtagtgctggcatt--------aaaggtgaa-gcgcgcattagcatagaagctgaacgatacagcgataacaaaatcggaaaagttcgtcagcgcct------gatgcgtatgcatcccatacatacagaaagcaaatactccccaatgaa------------------tgagcgtgttaagaacaccgatcgatgtgtacttagcgaataacttcaacattatgaaaattagccgattcagaaaggtctggagtgtagcactacaaattggtttgatcgatataagcgatcaataattgtatttttaatagttttaagctattgagttttaatatattgatcgatgttatcgatcaattggtattgctgattg---------ccaagcgtcttggaataaaaacg---ggacatgtaaagctttacatcgtcttacaaggctttgcatgttttttcagagagaggtac-ttgaaagggtggaagtgctggggagag-----------------ggggagcgttaaaaattctgtataattttagtaacataaaat-aaaaaagaatggcacatgtcccatcccttcgatttcgacaaagcacttaaagcccttca", "length": 99}, "name": null, "seq": null}, "NZ_AOXE01000059.1_427": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000059.1_49": {"blast_result": {"is_perfect": false, "slen": 699860, "pident": 99.695, "marker": "NZ_AOXE01000059.1_49", "qseqid": "NZ_AOXE01000059.1_49|3163456920", "qstart": 1, "is_trunc": false, "sseq_msa_gaps": 0, "sseq": "GTGTTAAAAAAATATCTTCCGCTTTTACTCCTGTGCGCGGCGCCTGCTTTCGCCAAACCCGTTCTCACCGTCTATACCTACGACTCGTTCGCCGCCGACTGGGGGCCAGGCCCGGCGGTGAAAAAAGCGTTTGAAGCCGATTGCAACTGCGAGCTGAAACTGGTGGCGCTGGAGGATGGCGTTTCGCTGCTCAACCGCCTGCGGATGGAGGGGAAGAACAGCAAAGCCGATGTGGTGTTGGGGCTGGACAATAATCTGCTGGAGGCGGCCACGCAAACTAAACTCTTTGCCAAAAGCGGCGTGGCGAATGAGGCGGTCAAGGTGCCCGGCGGCTGGAAAAACGACACATTTGTGCCGTTCGATTACGGCTATTTCGCCTTTGTCTACGATAAAAGCAAGCTGAAAAATCCGCCGAAAAGCCTGAAAGAACTGGTCGAGAGCGATCAAAAATGGCGGGTGATTTATCAGGATCCGCGTACCAGTACGCCAGGGCTGGGGCTGTTACTGTGGATGCGCAAAGTTTATGGCGATAACGCGCCGCAGGCCTGGCAAAAACTGGCGGCCAAAACGGTGACGGTGACGAAAGGCTGGAGCGAGGCCTACGGTTTATTTCTGAAAGGTGAAAGCGATTTGGTGCTCAGTTACACCACCTCTCCGGCGTATCACATTATTGAAGAGAAGAAGGACAATTACGCCGCCGCGAACTTCAGCGAAGGCCATTACTTACAGGTAGAAGTCGCGGCGCGTACCGTCGCCAGTAAGCAGCCGGAACTGGCGGAGAAATTCCTCAAATTTATGGTTTCTCCGGCGTTTCAGAACGCCATACCCACCGGCAACTGGATGTACCCGGTAGCGGACGTCGCCTTACCCGCAGGGTTTGAATCATTGGCCAAACCCGCCACAACGCTGGAATTCACGCCGCAACAAGTGGCAGCACAACGCCAGGCATGGATTAGCGAATGGCAACGCGCCGTCAGCCGTTAA", "bitscore": 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"GTGTTAAAAAAATATCTTCCGCTTTTACTCCTGTGCGCGGCGCCTGCTTTCGCCAAACCCGTTCTCACCGTCTATACCTACGACTCGTTCGCCGCCGACTGGGGGCCAGGCCCGGCGGTGAAAAAAGCGTTTGAAGCCGATTGCAACTGCGAGCTGAAACTGGTGGCGCTGGAGGATGGCGTTTCGCTGCTCAACCGCCTGCGGATGGAGGGGAAGAACAGCAAAGCCGATGTGGTGTTGGGGCTGGACAATAATCTGCTGGAGGCGGCCACGCAAACTAAACTCTTTGCCAAAAGCGGCGTGGCGAATGAGGCGGTCAAGGTGCCCGGCGGCTGGAAAAACGACACATTTGTGCCGTTCGATTACGGCTATTTCGCCTTTGTCTACGATAAAAGCAAGCTGAAAAATCCGCCGAAAAGCCTGAAAGAACTGGTCGAGAGCGATCAAAAATGGCGGGTGATTTATCAGGATCCGCGTACCAGTACGCCAGGGCTGGGGCTGTTACTGTGGATGCGCAAAGTTTATGGCGATAACGCGCCGCAGGCCTGGCAAAAACTGGCGGCCAAAACGGTGACGGTGACGAAAGGCTGGAGCGAGGCCTACGGTTTATTTCTGAAAGGTGAAAGCGATTTGGTGCTCAGTTACACCACCTCTCCGGCGTATCACATTATTGAAGAGAAGAAGGACAATTACGCCGCCGCGAACTTCAGCGAAGGCCATTACTTACAGGTAGAAGTCGCGGCGCGTACCGTCGCCAGTAAGCAGCCGGAACTGGCGGAGAAATTCCTCAAATTTATGGTTTCTCCGGCGTTTCAGAACGCCATACCCACCGGCAACTGGATGTACCCGGTAGCGGACGTCGCCTTACCCGCAGGGTTTGAATCATTGGCCAAACCCGCCACAACGCTGGAATTCACGCCGCAACAAGTGGCAGCACAACGCCAGGCATGGATTAGCGAATGGCAACGCGCCGTCAGCCGTTAA"}, "NZ_AOXE01000052.1_78": {"blast_result": {"is_perfect": false, "slen": 699860, "pident": 98.66, "marker": "NZ_AOXE01000052.1_78", "qseqid": "NZ_AOXE01000052.1_78|2940520545", "qstart": 1, "is_trunc": false, "sseq_msa_gaps": 0, "sseq": "ATGCATAACCAGGCTCCGATTCAACGTAGAAAATCGACACGTATTTACGTTGGGAATGTGCCGATTGGCGATGGCGCCCCTATCGCCGTCCAGTCGATGACTAACACGCGTACCACTGACGTGGAAGCGACGGTTAATCAGATCAAAGCGCTGGAGCGCGTTGGCGCAGATATTGTTCGTGTTTCTGTACCGACCATGGACGCCGCCGAAGCGTTCAAGCTTATCAAACAGCAGGTTAGCGTCCCGCTGGTTGCCGATATTCACTTCGACTACCGCATTGCGCTGAAAGTAGCGGAATACGGCGTTGACTGCTTGCGTATTAACCCCGGCAATATCGGTAACGAAGAACGCATTCGCATGGTGGTGGACTGCGCGCGCGACAAAAACATCCCTATCCGTATCGGCGTAAATGCCGGATCGCTGGAAAAAGATCTGCAGGAAAAATACGGAGAGCCGACGCCGCAGGCGCTGCTGGAATCAGCCATGCGCCATGTCGATCATCTCGATCGTCTCAACTTTGATCAGTTCAAAGTGAGCGTAAAAGCGTCCGATGTATTCCTTGCCGTTGAGTCTTATCGTTTGTTGGCTAAACAGATCGATCAGCCGCTGCATCTGGGGATCACCGAAGCGGGCGGCGCGCGTAGCGGGGCGGTTAAGTCGGCGATCGGTTTAGGTCTGCTGTTATCGGAAGGCATCGGCGACACGCTGCGCGTATCGTTGGCGGCCGACCCGGTGGAAGAGATCAAAGTCGGTTTCGATATCCTGAAGTCGCTGCGTATTCGCGCGCGCGGCATCAATTTCATCGCCTGCCCGACCTGTTCTCGTCAGGAGTTCGACGTTATCGGCACGGTGAACGCGCTGGAGCAGCGTCTGGAAGATATCATCACCCCGATGGACGTCTCGATCATCGGTTGTGTGGTGAACGGGCCGGGCGAAGCGCTGGTATCGACGCTGGGCGTGACGGGCGGCAATAAGAAAAGCGGCCTGTATGAAGACGGCGTGCGTAAGGACAGACTCGATAACGACGATATGATCGCGCAGCTTGAATCCCGTATTCGCGCGAAAGTAAGTCAACTTGATGAAGCGCGTCGGATTGACGTGCTGCAGGTTGAAAAATAA", "bitscore": 1984, "sseq_msa_p_gaps": 0.0, "evalue": 0.0, "gapopen": 0, "send": 384343, "has_perfect_match": false, "allele": 2940520545, "sstart": 383225, "allele_name": 2197498164, "start_idx": 383224.0, "qend": 1119, "needs_revcomp": false, "is_extended": false, "mismatch": 15, "coverage": 1.0, "too_many_gaps": false, "end_idx": 384342.0, "trunc": false, "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "qlen": 1119, "is_match": true, "length": 1119}, "name": 2197498164, "seq": "ATGCATAACCAGGCTCCGATTCAACGTAGAAAATCGACACGTATTTACGTTGGGAATGTGCCGATTGGCGATGGCGCCCCTATCGCCGTCCAGTCGATGACTAACACGCGTACCACTGACGTGGAAGCGACGGTTAATCAGATCAAAGCGCTGGAGCGCGTTGGCGCAGATATTGTTCGTGTTTCTGTACCGACCATGGACGCCGCCGAAGCGTTCAAGCTTATCAAACAGCAGGTTAGCGTCCCGCTGGTTGCCGATATTCACTTCGACTACCGCATTGCGCTGAAAGTAGCGGAATACGGCGTTGACTGCTTGCGTATTAACCCCGGCAATATCGGTAACGAAGAACGCATTCGCATGGTGGTGGACTGCGCGCGCGACAAAAACATCCCTATCCGTATCGGCGTAAATGCCGGATCGCTGGAAAAAGATCTGCAGGAAAAATACGGAGAGCCGACGCCGCAGGCGCTGCTGGAATCAGCCATGCGCCATGTCGATCATCTCGATCGTCTCAACTTTGATCAGTTCAAAGTGAGCGTAAAAGCGTCCGATGTATTCCTTGCCGTTGAGTCTTATCGTTTGTTGGCTAAACAGATCGATCAGCCGCTGCATCTGGGGATCACCGAAGCGGGCGGCGCGCGTAGCGGGGCGGTTAAGTCGGCGATCGGTTTAGGTCTGCTGTTATCGGAAGGCATCGGCGACACGCTGCGCGTATCGTTGGCGGCCGACCCGGTGGAAGAGATCAAAGTCGGTTTCGATATCCTGAAGTCGCTGCGTATTCGCGCGCGCGGCATCAATTTCATCGCCTGCCCGACCTGTTCTCGTCAGGAGTTCGACGTTATCGGCACGGTGAACGCGCTGGAGCAGCGTCTGGAAGATATCATCACCCCGATGGACGTCTCGATCATCGGTTGTGTGGTGAACGGGCCGGGCGAAGCGCTGGTATCGACGCTGGGCGTGACGGGCGGCAATAAGAAAAGCGGCCTGTATGAAGACGGCGTGCGTAAGGACAGACTCGATAACGACGATATGATCGCGCAGCTTGAATCCCGTATTCGCGCGAAAGTAAGTCAACTTGATGAAGCGCGTCGGATTGACGTGCTGCAGGTTGAAAAATAA"}, "NZ_AOXE01000085.1_63": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000085.1_10": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000068.1_52": {"seq": null, "name": null, "blast_result": null}, "NZ_AOYO01000084.1_456": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000073.1_130": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000081.1_49": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000059.1_42": {"blast_result": {"is_perfect": false, "slen": 699860, "pident": 98.919, "marker": "NZ_AOXE01000059.1_42", "qseqid": "NZ_AOXE01000059.1_42|3424005240", "qstart": 1, "is_trunc": false, "sseq_msa_gaps": 0, "sseq": "ATGAGCCAGCAAGTCATTATTTTTGATACGACCTTACGCGACGGCGAACAAGCGTTACAGGCCAGCCTGAGCGCGAAAGAGAAGCTGCAGATTGCCCTGGCCCTTGAGCGCATGGGTGTCGATGTCATGGAAGTGGGCTTCCCGGTCTCTTCTCCGGGTGATTTTGAATCCGTCCAAACCATCGCCCGCACCATCAAAAACAGCCGCGTTTGCGCCCTGGCGCGTTGTGTAGAAAAAGACATCGACGTTGCGGCACAGGCGCTGAAGGTCGCCGACGCGTTTCGTATCCATACTTTTATCGCCACCTCGCCAATGCACATCGCCACCAAGCTGCGCAGCACGCTGGATGAGGTCATCGAACGCGCGGTATACATGGTTAAGCGGGCGCGTAATTACACTGATGACGTGGAGTTCTCCTGCGAGGATGCTGGCCGGACGCCTGTTGACGATCTGGCGCGCGTGGTGGAAGCCGCTATAAACGCCGGCGCGAGAACCATCAATATTCCCGATACCGTGGGCTATACCATGCCGTTTGAGTTCGCGGGAATCATTTCCGGTCTGTATGAACGTGTCCCCAATATCGACAAAGCTATCATCTCCGTTCATACCCACGACGATTTAGGGATAGCGGTAGGCAACTCGCTGGCGGCAGTACATGCGGGCGCGCGTCAAGTTGAAGGCGCGATGAACGGTATCGGAGAACGTGCCGGTAACTGCGCGCTGGAAGAGGTGATCATGGCGATTAAAGTGCGCAAAGACATCATAAACGTACACACCAACATCAATCACCACGAAATCTGGCGCACCAGCCAGACCGTCAGCCAGATCTGTAACATGCCGATCCCGGCCAACAAAGCGATTGTTGGCAGCGGCGCTTTTGCCCACTCTTCCGGCATCCACCAGGATGGCGTCCTCAAGAACCGCGAAAACTATGAAATCATGACGCCAGAGTCCATCGGTCTGAACCAGATACAGCTGAACCTGACCTCCCGCTCTGGCCGTGCCGCCGTGAAACATCGCATGGAAGAGATGGGTTACAAGGACACAGACTACAACATGGGCCACCTGTACGACGCGTTCCTGAAGCTGGCGGACAAAAAAGGCCAGGTGTTCGACTATGACCTGGAAGCGCTGGCGTTTATTAATAAACAGCAAGAAGAACCAGAGCATTTCCGTCTGGATTACTTCAGCGTGCAGTCCGGCTCCAGCGATATCGCCACCGCTTCCGTGAAGCTGGCCTGTGGTGAAGAGATCAAGGCCGAGGCGGCGAACGGCAACGGCCCGGTCGACGCCATCTATCAGGCGATTAACCGCATCACTGGCTACGACGTTGAGTTGGTTAAATACGACCTGAACGCCAAAGGCCAGGGCAAAGACGCGCTGGGTCAGGTCGATATCGTCGTGAACCATCATGGTCGCCGCTTCCACGGCGTCGGGCTGGCGACGGATATCGTCGAATCCTCCGCCAAAGCGATGGTACACGTACTGAACAATATCTGGCGCGCCGCCGAAGTTGAAAAAGAATTGCAACGCAAAGCTCAAAATAAAGAGAACAACAAGGAAACCGTGTAA", "bitscore": 2809, "sseq_msa_p_gaps": 0.0, "evalue": 0.0, "gapopen": 0, "send": 133572, "has_perfect_match": false, "allele": 3424005240, "sstart": 135143, "allele_name": 1495737522, "start_idx": 133571.0, "qend": 1572, "needs_revcomp": true, "is_extended": false, "mismatch": 17, "coverage": 1.0, "too_many_gaps": false, "end_idx": 135142.0, "trunc": false, "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "qlen": 1572, "is_match": true, "length": 1572}, "name": 1495737522, "seq": "ATGAGCCAGCAAGTCATTATTTTTGATACGACCTTACGCGACGGCGAACAAGCGTTACAGGCCAGCCTGAGCGCGAAAGAGAAGCTGCAGATTGCCCTGGCCCTTGAGCGCATGGGTGTCGATGTCATGGAAGTGGGCTTCCCGGTCTCTTCTCCGGGTGATTTTGAATCCGTCCAAACCATCGCCCGCACCATCAAAAACAGCCGCGTTTGCGCCCTGGCGCGTTGTGTAGAAAAAGACATCGACGTTGCGGCACAGGCGCTGAAGGTCGCCGACGCGTTTCGTATCCATACTTTTATCGCCACCTCGCCAATGCACATCGCCACCAAGCTGCGCAGCACGCTGGATGAGGTCATCGAACGCGCGGTATACATGGTTAAGCGGGCGCGTAATTACACTGATGACGTGGAGTTCTCCTGCGAGGATGCTGGCCGGACGCCTGTTGACGATCTGGCGCGCGTGGTGGAAGCCGCTATAAACGCCGGCGCGAGAACCATCAATATTCCCGATACCGTGGGCTATACCATGCCGTTTGAGTTCGCGGGAATCATTTCCGGTCTGTATGAACGTGTCCCCAATATCGACAAAGCTATCATCTCCGTTCATACCCACGACGATTTAGGGATAGCGGTAGGCAACTCGCTGGCGGCAGTACATGCGGGCGCGCGTCAAGTTGAAGGCGCGATGAACGGTATCGGAGAACGTGCCGGTAACTGCGCGCTGGAAGAGGTGATCATGGCGATTAAAGTGCGCAAAGACATCATAAACGTACACACCAACATCAATCACCACGAAATCTGGCGCACCAGCCAGACCGTCAGCCAGATCTGTAACATGCCGATCCCGGCCAACAAAGCGATTGTTGGCAGCGGCGCTTTTGCCCACTCTTCCGGCATCCACCAGGATGGCGTCCTCAAGAACCGCGAAAACTATGAAATCATGACGCCAGAGTCCATCGGTCTGAACCAGATACAGCTGAACCTGACCTCCCGCTCTGGCCGTGCCGCCGTGAAACATCGCATGGAAGAGATGGGTTACAAGGACACAGACTACAACATGGGCCACCTGTACGACGCGTTCCTGAAGCTGGCGGACAAAAAAGGCCAGGTGTTCGACTATGACCTGGAAGCGCTGGCGTTTATTAATAAACAGCAAGAAGAACCAGAGCATTTCCGTCTGGATTACTTCAGCGTGCAGTCCGGCTCCAGCGATATCGCCACCGCTTCCGTGAAGCTGGCCTGTGGTGAAGAGATCAAGGCCGAGGCGGCGAACGGCAACGGCCCGGTCGACGCCATCTATCAGGCGATTAACCGCATCACTGGCTACGACGTTGAGTTGGTTAAATACGACCTGAACGCCAAAGGCCAGGGCAAAGACGCGCTGGGTCAGGTCGATATCGTCGTGAACCATCATGGTCGCCGCTTCCACGGCGTCGGGCTGGCGACGGATATCGTCGAATCCTCCGCCAAAGCGATGGTACACGTACTGAACAATATCTGGCGCGCCGCCGAAGTTGAAAAAGAATTGCAACGCAAAGCTCAAAATAAAGAGAACAACAAGGAAACCGTGTAA"}, "NZ_AOXE01000017.1_43": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000036.1_157": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000083.1_74": {"blast_result": {"is_perfect": false, "slen": 699860, "pident": 99.79799999999999, "marker": "NZ_AOXE01000083.1_74", "qseqid": "NZ_AOXE01000083.1_74|2213333225", "qstart": 1, "is_trunc": false, "sseq_msa_gaps": 0, "sseq": "ATGGAAATGACCAACGCGCAACGTCTGATTTTGTCTAACCAGTACAAAATGATGACGATGCTCGATCCCACCAACGCCGAGCGTTACCGTCGCTTACAAACAATTATTGAACGCGGCTACGGCCTGCAGATGCGCGAGCTGGATCGCGAGTTTGGCGAGCTGACGGAAGAGACCTGTCGTACCATCATCGATATTATGGAGATGTACCATGCGCTGCACGTCTCCTGGACCAACCTCAAAGATACGCAAGCCATCGACGAACGTCGCGTCACCTTCCTGGGGTTTGACGCCGCGACGGAAGCGCGTTACCTCGGCTATGTCCGTTTTATGGTGAATATAGAAGGACGCTACACTCACTTTGACGCCGGGACGCACGGCTTTAATGCCCAGACGCCGATGTGGGAAAAATACCAGCGGATGTTGAATGTCTGGCATGCCTGCCCGCGTCAGTACCACCTGAGCGCGAATGAAATCAATCAAATCATTAATGCCTGA", "bitscore": 909, "sseq_msa_p_gaps": 0.0, "evalue": 0.0, "gapopen": 0, "send": 603123, "has_perfect_match": false, "allele": 2213333225, "sstart": 602629, "allele_name": 3051501604, "start_idx": 602628.0, "qend": 495, "needs_revcomp": false, "is_extended": false, "mismatch": 1, "coverage": 1.0, "too_many_gaps": false, "end_idx": 603122.0, "trunc": false, "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "qlen": 495, "is_match": true, "length": 495}, "name": 3051501604, "seq": "ATGGAAATGACCAACGCGCAACGTCTGATTTTGTCTAACCAGTACAAAATGATGACGATGCTCGATCCCACCAACGCCGAGCGTTACCGTCGCTTACAAACAATTATTGAACGCGGCTACGGCCTGCAGATGCGCGAGCTGGATCGCGAGTTTGGCGAGCTGACGGAAGAGACCTGTCGTACCATCATCGATATTATGGAGATGTACCATGCGCTGCACGTCTCCTGGACCAACCTCAAAGATACGCAAGCCATCGACGAACGTCGCGTCACCTTCCTGGGGTTTGACGCCGCGACGGAAGCGCGTTACCTCGGCTATGTCCGTTTTATGGTGAATATAGAAGGACGCTACACTCACTTTGACGCCGGGACGCACGGCTTTAATGCCCAGACGCCGATGTGGGAAAAATACCAGCGGATGTTGAATGTCTGGCATGCCTGCCCGCGTCAGTACCACCTGAGCGCGAATGAAATCAATCAAATCATTAATGCCTGA"}, "NZ_AOXE01000068.1_72": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000081.1_209": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000033.1_19": {"blast_result": {"is_perfect": false, "slen": 699860, "pident": 99.83200000000001, "marker": "NZ_AOXE01000033.1_19", "qseqid": "NZ_AOXE01000033.1_19|2182470506", "qstart": 1, "is_trunc": false, "sseq_msa_gaps": 0, "sseq": "ATGATCGAATTTGTTTATCCACACACCCATTTAGTGGCGGGTGTGGATGAAGTGGGCCGTGGCCCGCTGGTGGGCGCCGTAGTGACCGCCGCCGTGATCCTCGATCCGGCGCGTCCGATCGTCGGTCTGAATGATTCCAAAAAATTGTCTGAAAAGCGTCGTCTGTCATTGTATGACGAGATTAAAGAAAAGGCGTTAAGCTGGAGTCTGGGACGCGCGGAAGCGCATGAAATTGATGAGCTGAATATTTTGCACGCCACCATGCTCGCCATGCAGCGCGCTGTCGCTGGTCTGCATATTGCGCCAGAATATGTGCTGATCGACGGCAATCGCTGTCCGGAGCTGCCTGTGCCGTCAATGGCCGTGGTGAAAGGCGACAGCCGCGTGGCGGAGATTAGCGCGGCGTCTATTCTGGCGAAAGTCACCCGCGACGCAGAAATGGCGGCGCTGGATATCGTTTTTCCTCAGTATGGCTTTGCGCAGCACAAAGGCTATCCAACCGCTTTTCATCTGGAAAAGTTGGCCCAGTATGGCGCGACGGCGCACCACCGACGCAGTTTTGCGCCTGTTAAACGCGCTCTGGGACTTGTGTCCTGA", "bitscore": 1098, "sseq_msa_p_gaps": 0.0, "evalue": 0.0, "gapopen": 0, "send": 266397, "has_perfect_match": false, "allele": 2182470506, "sstart": 265801, "allele_name": 1301843222, "start_idx": 265800.0, "qend": 597, "needs_revcomp": false, "is_extended": false, "mismatch": 1, "coverage": 1.0, "too_many_gaps": false, "end_idx": 266396.0, "trunc": false, "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "qlen": 597, "is_match": true, "length": 597}, "name": 1301843222, "seq": "ATGATCGAATTTGTTTATCCACACACCCATTTAGTGGCGGGTGTGGATGAAGTGGGCCGTGGCCCGCTGGTGGGCGCCGTAGTGACCGCCGCCGTGATCCTCGATCCGGCGCGTCCGATCGTCGGTCTGAATGATTCCAAAAAATTGTCTGAAAAGCGTCGTCTGTCATTGTATGACGAGATTAAAGAAAAGGCGTTAAGCTGGAGTCTGGGACGCGCGGAAGCGCATGAAATTGATGAGCTGAATATTTTGCACGCCACCATGCTCGCCATGCAGCGCGCTGTCGCTGGTCTGCATATTGCGCCAGAATATGTGCTGATCGACGGCAATCGCTGTCCGGAGCTGCCTGTGCCGTCAATGGCCGTGGTGAAAGGCGACAGCCGCGTGGCGGAGATTAGCGCGGCGTCTATTCTGGCGAAAGTCACCCGCGACGCAGAAATGGCGGCGCTGGATATCGTTTTTCCTCAGTATGGCTTTGCGCAGCACAAAGGCTATCCAACCGCTTTTCATCTGGAAAAGTTGGCCCAGTATGGCGCGACGGCGCACCACCGACGCAGTTTTGCGCCTGTTAAACGCGCTCTGGGACTTGTGTCCTGA"}, "NZ_AOXE01000033.1_17": {"blast_result": {"is_perfect": false, "slen": 699860, "pident": 99.479, "marker": "NZ_AOXE01000033.1_17", "qseqid": "NZ_AOXE01000033.1_17|3701617799", "qstart": 1, "is_trunc": false, "sseq_msa_gaps": 0, "sseq": "ATGAGTCTGAATTTCCTTGATTTTGAACAGCCGATAGCAGAGCTGGAAGCGAAAATCGATTCTCTGACTGCGGTAAGCCGCCAGGATGAGAAACTGGATATTAATATCGATGAAGAAGTCCATCGCCTGCGCGAAAAAAGCGTAGAACTGACGCGCAAAATCTTCGCCGATCTCGGCGCATGGCAGGTAGCCCAACTGGCGCGCCATCCGCAGCGTCCGTACACCTTGGATTATGTCCGTCTGGCGTTTGATGAGTTTGATGAGCTGGCGGGCGATCGCGCCTATGCTGATGACAAAGCCATCGTCGGCGGTATCGCGCGTCTGGAAGGGCGACCGGTGATGATCATTGGTCATCAGAAAGGTCGTGAAACCAAAGAAAAAATTCGTCGTAACTTTGGCATGCCAGCGCCGGAAGGCTACCGCAAAGCGCTGCGCCTGATGGAAATGGCTGAACGCTTCAACATGCCGATTATCACCTTCATCGACACCCCGGGCGCTTACCCTGGCGTGGGCGCGGAAGAGCGTGGTCAGTCTGAAGCTATCGCCCGCAACCTGCGTGAGATGTCTCGTCTGAACGTACCGGTCATCTGCACCGTGATTGGCGAAGGCGGCTCCGGCGGCGCATTGGCGATTGGCGTGGGTGATAAAGTGAATATGCTGCAATACAGCACCTATTCCGTTATCTCCCCGGAAGGTTGCGCCTCTATTTTGTGGAAGAGCGCCGACAAAGCGCCATTGGCTGCTGAAGCGATGGGCATCATCGCGCCGCGTCTGAAAGAGCTGAAGCTAATCGATTCCATCATTCCGGAGCCGCTGGGCGGCGCGCACCGTAATCCGGAAGCGATGGCGGCGTCGCTAAAAGCGCAGCTGCTGGAAGATTTAGCCGATCTCGATGTGTTAAGCACCGATGATTTAAAAAACCGTCGTTACCAGCGTTTGATGAGCTACGGTTACGCCTAA", "bitscore": 1746, "sseq_msa_p_gaps": 0.0, "evalue": 0.0, "gapopen": 0, "send": 270875, "has_perfect_match": false, "allele": 3701617799, "sstart": 269916, "allele_name": 3779563470, "start_idx": 269915.0, "qend": 960, "needs_revcomp": false, "is_extended": false, "mismatch": 5, "coverage": 1.0, "too_many_gaps": false, "end_idx": 270874.0, "trunc": false, "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "qlen": 960, "is_match": true, "length": 960}, "name": 3779563470, "seq": "ATGAGTCTGAATTTCCTTGATTTTGAACAGCCGATAGCAGAGCTGGAAGCGAAAATCGATTCTCTGACTGCGGTAAGCCGCCAGGATGAGAAACTGGATATTAATATCGATGAAGAAGTCCATCGCCTGCGCGAAAAAAGCGTAGAACTGACGCGCAAAATCTTCGCCGATCTCGGCGCATGGCAGGTAGCCCAACTGGCGCGCCATCCGCAGCGTCCGTACACCTTGGATTATGTCCGTCTGGCGTTTGATGAGTTTGATGAGCTGGCGGGCGATCGCGCCTATGCTGATGACAAAGCCATCGTCGGCGGTATCGCGCGTCTGGAAGGGCGACCGGTGATGATCATTGGTCATCAGAAAGGTCGTGAAACCAAAGAAAAAATTCGTCGTAACTTTGGCATGCCAGCGCCGGAAGGCTACCGCAAAGCGCTGCGCCTGATGGAAATGGCTGAACGCTTCAACATGCCGATTATCACCTTCATCGACACCCCGGGCGCTTACCCTGGCGTGGGCGCGGAAGAGCGTGGTCAGTCTGAAGCTATCGCCCGCAACCTGCGTGAGATGTCTCGTCTGAACGTACCGGTCATCTGCACCGTGATTGGCGAAGGCGGCTCCGGCGGCGCATTGGCGATTGGCGTGGGTGATAAAGTGAATATGCTGCAATACAGCACCTATTCCGTTATCTCCCCGGAAGGTTGCGCCTCTATTTTGTGGAAGAGCGCCGACAAAGCGCCATTGGCTGCTGAAGCGATGGGCATCATCGCGCCGCGTCTGAAAGAGCTGAAGCTAATCGATTCCATCATTCCGGAGCCGCTGGGCGGCGCGCACCGTAATCCGGAAGCGATGGCGGCGTCGCTAAAAGCGCAGCTGCTGGAAGATTTAGCCGATCTCGATGTGTTAAGCACCGATGATTTAAAAAACCGTCGTTACCAGCGTTTGATGAGCTACGGTTACGCCTAA"}, "NZ_AOXE01000033.1_14": {"blast_result": {"is_perfect": false, "slen": 699860, "pident": 99.48700000000001, "marker": "NZ_AOXE01000033.1_14", "qseqid": "NZ_AOXE01000033.1_14|2605175336", "qstart": 1, "is_trunc": false, "sseq_msa_gaps": 0, "sseq": "ATGCTGGGATTAAAACAGGTTCATCACATCGCGATCATTGCGACAGACTATGCGGTGAGCAAGGCGTTTTATTGCGATATTCTGGGGTTCGATCTGCTAAGCGAAGCCTGGCGGGAAGAGCGTGACTCGTGGAAGGGCGATTTGGCGCTAAACGGGCAGTATGTGATTGAGCTTTTCTCTTTTCCCTTCCCTCCGGCGCGTCCAAGCCGACCTGAAGCCTGCGGTCTGCGCCATCTGGCTTTCAGCGTGGAAAATGTGGAAAACGCCGTTGCGCATCTGGAAAAGCATCAGGTTAAGTGCGAACCGATACGCATCGATCCGTATACCGGGAAGCGCTTTACTTTTTTCAACGATCCGGACGGTTTACCGCTTGAGCTGTATGAGCAGTAA", "bitscore": 710, "sseq_msa_p_gaps": 0.0, "evalue": 0.0, "gapopen": 0, "send": 276190, "has_perfect_match": false, "allele": 2605175336, "sstart": 275801, "allele_name": 1672513023, "start_idx": 275800.0, "qend": 390, "needs_revcomp": false, "is_extended": false, "mismatch": 2, "coverage": 1.0, "too_many_gaps": false, "end_idx": 276189.0, "trunc": false, "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "qlen": 390, "is_match": true, "length": 390}, "name": 1672513023, "seq": "ATGCTGGGATTAAAACAGGTTCATCACATCGCGATCATTGCGACAGACTATGCGGTGAGCAAGGCGTTTTATTGCGATATTCTGGGGTTCGATCTGCTAAGCGAAGCCTGGCGGGAAGAGCGTGACTCGTGGAAGGGCGATTTGGCGCTAAACGGGCAGTATGTGATTGAGCTTTTCTCTTTTCCCTTCCCTCCGGCGCGTCCAAGCCGACCTGAAGCCTGCGGTCTGCGCCATCTGGCTTTCAGCGTGGAAAATGTGGAAAACGCCGTTGCGCATCTGGAAAAGCATCAGGTTAAGTGCGAACCGATACGCATCGATCCGTATACCGGGAAGCGCTTTACTTTTTTCAACGATCCGGACGGTTTACCGCTTGAGCTGTATGAGCAGTAA"}, "NZ_AOXE01000033.1_12": {"blast_result": {"is_perfect": false, "slen": 699860, "pident": 99.617, "marker": "NZ_AOXE01000033.1_12", "qseqid": "NZ_AOXE01000033.1_12|1468433679", "qstart": 1, "is_trunc": false, "sseq_msa_gaps": 0, "sseq": "ATGTCAATGAATGAAACGTATCAACCCATTAATTGCGATGACTACGATAGTCTTGAGCTTGCCTGCATGCATCATTTAATACTGACGCTAACGTTAAAAGATGGCGAGGTTTTGCAGGCAAAAGCGAACGATTTGATCTTACGTAAAAACGTAGAGTATCTGCTTGCCGAGGTTTCCGGCGAGTCTTGTGAACTTCGTCTCGATAAAATCGCCAGTTTCAGCCACCCGGAAATTGGTACCGTGGTAGTTAGCGAATCCTGA", "bitscore": 477, "sseq_msa_p_gaps": 0.0, "evalue": 2.9499999999999993e-136, "gapopen": 0, "send": 277629, "has_perfect_match": false, "allele": 1468433679, "sstart": 277889, "allele_name": 2666669453, "start_idx": 277628.0, "qend": 261, "needs_revcomp": true, "is_extended": false, "mismatch": 1, "coverage": 1.0, "too_many_gaps": false, "end_idx": 277888.0, "trunc": false, "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "qlen": 261, "is_match": true, "length": 261}, "name": 2666669453, "seq": "ATGTCAATGAATGAAACGTATCAACCCATTAATTGCGATGACTACGATAGTCTTGAGCTTGCCTGCATGCATCATTTAATACTGACGCTAACGTTAAAAGATGGCGAGGTTTTGCAGGCAAAAGCGAACGATTTGATCTTACGTAAAAACGTAGAGTATCTGCTTGCCGAGGTTTCCGGCGAGTCTTGTGAACTTCGTCTCGATAAAATCGCCAGTTTCAGCCACCCGGAAATTGGTACCGTGGTAGTTAGCGAATCCTGA"}, "NZ_AOXE01000081.1_201": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000033.1_11": {"blast_result": {"is_perfect": true, "slen": 699860, "pident": 100.0, "marker": "NZ_AOXE01000033.1_11", "qseqid": "NZ_AOXE01000033.1_11|2353669245", "qstart": 1, "is_trunc": false, "sseq_msa_gaps": 0, "sseq": "GTGGAAAAATATTGTGAGTTAGTACGCAAGCGGTATGCGGAAATCGCCAGCGGAGACTTAGGGTATGTCCCGGATGCGCTGGGTTGTGTATTGAAAGTGCTTAATGAAGTGGCGGCAGATAGCGCCCTTTCAGAGTCGGTCAGGGAAAAGGCAGCTTATGCTGCCGCGAACTTACTGGTGAGCGATTATGTCAATGAATGA", "bitscore": 372, "sseq_msa_p_gaps": 0.0, "evalue": 1.0799999999999998e-104, "gapopen": 0, "send": 277876, "has_perfect_match": true, "allele": 2353669245, "sstart": 278076, "allele_name": 2353669245, "start_idx": 277875.0, "qend": 201, "needs_revcomp": true, "is_extended": false, "mismatch": 0, "coverage": 1.0, "too_many_gaps": false, "end_idx": 278075.0, "trunc": false, "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "qlen": 201, "is_match": true, "length": 201}, "name": 2353669245, "seq": "GTGGAAAAATATTGTGAGTTAGTACGCAAGCGGTATGCGGAAATCGCCAGCGGAGACTTAGGGTATGTCCCGGATGCGCTGGGTTGTGTATTGAAAGTGCTTAATGAAGTGGCGGCAGATAGCGCCCTTTCAGAGTCGGTCAGGGAAAAGGCAGCTTATGCTGCCGCGAACTTACTGGTGAGCGATTATGTCAATGAATGA"}, "NZ_AOXE01000016.1_13": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000072.1_13": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000050.1_44": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000036.1_3": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000036.1_2": {"seq": null, "name": null, "blast_result": null}, "NZ_CM001471.1_3941": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000072.1_100": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000077.1_28": {"seq": null, "name": null, "blast_result": null}, "NC_017623.1_3300": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000072.1_104": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000035.1_21": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000034.1_53": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000034.1_173": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000073.1_79": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000072.1_93": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000072.1_3": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000072.1_82": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXI01000016.1_73": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000081.1_186": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000068.1_67": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000072.1_8": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000040.1_19": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000059.1_38": {"blast_result": {"is_perfect": false, "slen": 699860, "pident": 99.70100000000001, "marker": "NZ_AOXE01000059.1_38", "qseqid": "NZ_AOXE01000059.1_38|381063551", "qstart": 1, "is_trunc": false, "sseq_msa_gaps": 0, "sseq": "GTGAAACTGGATGAAATCGCTCGGCTGGCCGGTGTCTCGCGCACAACTGCAAGCTACGTTATAAACGGTAAAGCAAAGCAATACCGCGTGAGCGACAAAACCGTAGAAAAAGTCATGGCGGTAGTGCGTGAGCACAATTACCATCCTAACGCTGTGGCTGCCGGGCTGCGTGCTGGACGCACACGTTCCATTGGTCTGGTGATCCCGGACCTTGAAAACACGAGCTACACCCGTATCGCAAACTATCTTGAGCGCCAGGCACGCCAGCGTGGCTACCAACTGCTGATCGCCTGTTCTGAAGATCAGCCGGATAACGAAATGCGCTGCATTGAGCACCTTTTGCAACGCCAGGTGGATGCAATCATTGTTTCAACTTCGTTACCGCCGGAGCATCCCTTCTATCAGCGCTGGGCCAACGATCCGTTCCCCATCGTCGCGCTCGACCGCGCGCTGGATCGCGAACATTTCACCAGCGTGGTCGGCGCCGATCAGGATGATGCCGAGATGTTGGCGGAAGAGCTGCGTAAATTCCCGGCGGAAACGGTGCTTTATTTGGGCGCGCTGCCGGAGTTGTCCGTCAGTTTCCTGCGCGAGCAGGGGTTCCGCACCGCATGGAAAGACGATCCGCGGGAGGTGAATTTCTTATATGCCAACAGCTATGAGCGCGAAGCCGCCGCGCAGCTGTTTGAGAAATGGCTGGAAACGCATCCTATGCCGCAGGCGCTCTTTACGACATCATTCGCGCTATTACAGGGCGTGATGGACGTTACGCTGCGGCGCGATGGAAAACTGCCTTCGGATTTAGCGATTGCGACCTTTGGCGATCATGAGCTGCTGGATTTTCTGCAATGCCCGGTACTGGCGGTGGCGCAGCGTCATCGTGATGTCGCGGAACGCGTGCTGGAGATTGTGCTGGCAAGTCTTGATGAACCGCGTAAACCGAAACCCGGCTTAACGCGTATTCGGCGAAACCTGTATCGTCGCGGCATTCTGAGCCGTAGCTAA", 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"GTGAAACTGGATGAAATCGCTCGGCTGGCCGGTGTCTCGCGCACAACTGCAAGCTACGTTATAAACGGTAAAGCAAAGCAATACCGCGTGAGCGACAAAACCGTAGAAAAAGTCATGGCGGTAGTGCGTGAGCACAATTACCATCCTAACGCTGTGGCTGCCGGGCTGCGTGCTGGACGCACACGTTCCATTGGTCTGGTGATCCCGGACCTTGAAAACACGAGCTACACCCGTATCGCAAACTATCTTGAGCGCCAGGCACGCCAGCGTGGCTACCAACTGCTGATCGCCTGTTCTGAAGATCAGCCGGATAACGAAATGCGCTGCATTGAGCACCTTTTGCAACGCCAGGTGGATGCAATCATTGTTTCAACTTCGTTACCGCCGGAGCATCCCTTCTATCAGCGCTGGGCCAACGATCCGTTCCCCATCGTCGCGCTCGACCGCGCGCTGGATCGCGAACATTTCACCAGCGTGGTCGGCGCCGATCAGGATGATGCCGAGATGTTGGCGGAAGAGCTGCGTAAATTCCCGGCGGAAACGGTGCTTTATTTGGGCGCGCTGCCGGAGTTGTCCGTCAGTTTCCTGCGCGAGCAGGGGTTCCGCACCGCATGGAAAGACGATCCGCGGGAGGTGAATTTCTTATATGCCAACAGCTATGAGCGCGAAGCCGCCGCGCAGCTGTTTGAGAAATGGCTGGAAACGCATCCTATGCCGCAGGCGCTCTTTACGACATCATTCGCGCTATTACAGGGCGTGATGGACGTTACGCTGCGGCGCGATGGAAAACTGCCTTCGGATTTAGCGATTGCGACCTTTGGCGATCATGAGCTGCTGGATTTTCTGCAATGCCCGGTACTGGCGGTGGCGCAGCGTCATCGTGATGTCGCGGAACGCGTGCTGGAGATTGTGCTGGCAAGTCTTGATGAACCGCGTAAACCGAAACCCGGCTTAACGCGTATTCGGCGAAACCTGTATCGTCGCGGCATTCTGAGCCGTAGCTAA"}, "NZ_AOXE01000021.1_10": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000004.1_39": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000079.1_15": {"seq": null, "name": null, "blast_result": null}, "NC_003198.1_3005": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000041.1_75": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000059.1_31": {"blast_result": {"is_perfect": false, "slen": 699860, "pident": 99.411, "marker": "NZ_AOXE01000059.1_31", "qseqid": "NZ_AOXE01000059.1_31|2043723617", "qstart": 1, "is_trunc": false, "sseq_msa_gaps": 0, "sseq": "ATGATTAGCGTAACGCTCAGCAAAATTGCCGATGTCCTTGGCGCCGAACACCGCGGGGCGGATCTCACGCTCGATACGGTCATTACCGACACACGGAAAGTGACGCCGGGATGCCTGTTCGTGGCGCTGAAAGGGGAACGCTTTGATGCGCATGATTTTGCTGATAAAGCAAAAGCGAACGGCGCTGGCGCCCTGCTGGTCAGTCGTCCTCTGGATATCGATCTTCCGCAGGTGATTGTAAAAGACACGCGTCAGGCATTTGGCCAACTGGCCGCCTGGGTACGTATGCAGGTACCGGCGCGGGTGGTGGCGTTAACCGGTTCGTCCGGCAAAACCTCGGTCAAAGAGATGACCGCCGCGATTCTTAGCCAGTGCGGAAATACTTTGTATACCGCAAGCAATTTTAACAACGACATCGGCGTGCCGATAACGCTGCTGCGCTTAAACCATGATTATGACTATGCGGTGATCGAGTTAGGCGCTAATCACCAGGGAGAAATCGCCTGGACCGTTAGCCTGACGCGCCCGGAAGCGGCGCTGGTCAATAACCTGGCGGCGGCGCATCTGGAAGGTTTCGGCTCGCTGGCCGGCGTGGCGAAAGCGAAAGGCGAAATCTATACCGGTTTGCCTGAGAACGGTATCGCGATTATGAATGCCGATAATAATGACTGGCTGAACTGGCAAAGCATTATTGGCGATCGTCAGGTGTGGCGCTTTTCGCCGAATGCGGCAAACAGCGACTTTACCGCTGCGAATATCCACGTGACGTCACACGGTACCGAATTTACCCTGCAAACGCCGATGGGCAGCATTGATGTGCTGCTGCCGTTGCCGGGGCGGCACAATATTGCCAACGCGCTGGCGGCCGCTGCTTTATCAATGGCGGTGGGGGCGACGCTGGCGGCGGTTAAAGCAGGGCTGGCGGCGTTAAAAGCCGTACCCGGGCGTCTGTTCCCGATTCAACTAAGTGAAAACCAACTGGTACTGGATGACGCTTATAACGCCAACGTCGGTTCGATGACCGCCGCAGTGCAGGTCCTTTCTGAAATGCCCGGCTACCGCGTGCTGGTGGTAGGCGATATGGCCGAGCTGGGCGCAGAAAGCGAAGCGTGCCACCTCCAGGTTGGCGAGGCCGCAAAAGCGGCGGGTATTGATCGCGTGTTAAGCACCGGAAAACTCAGTCAGGTTATCAGCCACGCCAGCGGCGTCGGCGAACATTTTGCCGATAAAGCCGCGCTCATTGCGCGTTTACACGCTCTGCTTCAGGAGCAACCGATGATGACTATTTTAGTGAAAGGATCACGCAGCGCCGCGATGGAAGATGTGGTTCATGCGTTACAGGAGAAAGGTTCATGTTAG", 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"ATGATTAGCGTAACGCTCAGCAAAATTGCCGATGTCCTTGGCGCCGAACACCGCGGGGCGGATCTCACGCTCGATACGGTCATTACCGACACACGGAAAGTGACGCCGGGATGCCTGTTCGTGGCGCTGAAAGGGGAACGCTTTGATGCGCATGATTTTGCTGATAAAGCAAAAGCGAACGGCGCTGGCGCCCTGCTGGTCAGTCGTCCTCTGGATATCGATCTTCCGCAGGTGATTGTAAAAGACACGCGTCAGGCATTTGGCCAACTGGCCGCCTGGGTACGTATGCAGGTACCGGCGCGGGTGGTGGCGTTAACCGGTTCGTCCGGCAAAACCTCGGTCAAAGAGATGACCGCCGCGATTCTTAGCCAGTGCGGAAATACTTTGTATACCGCAAGCAATTTTAACAACGACATCGGCGTGCCGATAACGCTGCTGCGCTTAAACCATGATTATGACTATGCGGTGATCGAGTTAGGCGCTAATCACCAGGGAGAAATCGCCTGGACCGTTAGCCTGACGCGCCCGGAAGCGGCGCTGGTCAATAACCTGGCGGCGGCGCATCTGGAAGGTTTCGGCTCGCTGGCCGGCGTGGCGAAAGCGAAAGGCGAAATCTATACCGGTTTGCCTGAGAACGGTATCGCGATTATGAATGCCGATAATAATGACTGGCTGAACTGGCAAAGCATTATTGGCGATCGTCAGGTGTGGCGCTTTTCGCCGAATGCGGCAAACAGCGACTTTACCGCTGCGAATATCCACGTGACGTCACACGGTACCGAATTTACCCTGCAAACGCCGATGGGCAGCATTGATGTGCTGCTGCCGTTGCCGGGGCGGCACAATATTGCCAACGCGCTGGCGGCCGCTGCTTTATCAATGGCGGTGGGGGCGACGCTGGCGGCGGTTAAAGCAGGGCTGGCGGCGTTAAAAGCCGTACCCGGGCGTCTGTTCCCGATTCAACTAAGTGAAAACCAACTGGTACTGGATGACGCTTATAACGCCAACGTCGGTTCGATGACCGCCGCAGTGCAGGTCCTTTCTGAAATGCCCGGCTACCGCGTGCTGGTGGTAGGCGATATGGCCGAGCTGGGCGCAGAAAGCGAAGCGTGCCACCTCCAGGTTGGCGAGGCCGCAAAAGCGGCGGGTATTGATCGCGTGTTAAGCACCGGAAAACTCAGTCAGGTTATCAGCCACGCCAGCGGCGTCGGCGAACATTTTGCCGATAAAGCCGCGCTCATTGCGCGTTTACACGCTCTGCTTCAGGAGCAACCGATGATGACTATTTTAGTGAAAGGATCACGCAGCGCCGCGATGGAAGATGTGGTTCATGCGTTACAGGAGAAAGGTTCATGTTAG"}, "NZ_AOXE01000059.1_32": {"blast_result": {"is_perfect": false, "slen": 699860, "pident": 99.32799999999999, "marker": "NZ_AOXE01000059.1_32", "qseqid": "NZ_AOXE01000059.1_32|1536557203", "qstart": 1, "is_trunc": false, "sseq_msa_gaps": 0, "sseq": "GTGGCAGATCGTAATTTGCGCGACCTTCTTGCTCCGTGGGTGGCTGGACTACCCGCGCGAGAACTGCGAGAGATGACGCTCGACAGCCGTGTGGCTGCGGCGGGCGATCTCTTTGTGGCAGTGGTGGGTCATCAGGCGGACGGGCGTCGTTATATCCCGCAGGCGATAGCGCAAGGCGTAGCTGCCATTATTGCAGAGGCGAAAGACGAGGCGAGTGACGGTGAGATTCGCGAAATGCACGGCGTACCAGTCGTCTATCTCAGCCAGCTCAATGAGCGTTTATCTGCGCTGGCGGGCCGCTTTTACCATGAGCCATCTGAAAACATGCGTCTGGTGGCGGTGACCGGCACCAATGGCAAGACCACCACCACCCAACTACTGGCGCAGTGGAGCCAGTTGCTCGGCGAAACCAGCGCAGTGATGGGGACGGTAGGTAACGGACTGTTGGGTAAAGTGATCCCGACGGAGAACACAACCGGTTCCGCAGTGGATGTTCAGCATGTGCTGGCCAGTCTGGTTGCGCAGGGCGCGACCTTCGGCGCTATGGAAGTCTCTTCTCACGGCCTGGTGCAGCATCGCGTGGCGGCGCTGAAATTTGCCGCCTCCGTGTTTACTAATTTGAGCCGCGACCATCTCGACTATCATGGCGATATGGCGCATTACGAGGCGGCAAAATGGATGCTTTATTCCACCCACCATCACGGTCAGGCAATCGTCAACGCCGATGATGAAGTTGGACGCCGCTGGCTGGCGTCGCTACCCGATGCGGTCGCGGTTTCAATGGAAGGGCATATCAACCCTAACTGTCACGGTCGTTGGCTGAAAGCGGAGGCGGTGGAGTACCACGACCGCGGAGTGACGATTCGTTTTGCTTCAAGCTGGGGTGAAGGCGAAATCGAAAGCTGCCTGATGGGCGCGTTTAACGTCAGCAACTTACTGCTGGCATTGGCGACGCTGCTGGCGCTGGGCTATCCGTTAACGGATTTGCTGAAAACCGCCGCGCGTTTGCAGCCGGTTTGCGGGCGTATGGAAGTGTTCACTGCGCCAGGCAAACCGACGGTGGTGGTGGATTACGCGCACACGCCGGATGCGCTGGAAAAAGCATTGCAGGCGGCGCGCCTGCACTGCGCCGGAAAATTGTGGTGCGTCTTTGGCTGTGGCGGGGATCGTGACAAAGGTAAGCGCCCACTCATGGGGGCCATTGCCGAAGAATTCGCGGATATCGTCGTGGTGACTGACGATAACCCGCGTACCGAGGAGCCGCGCGCCATTATCAACGATATTCTGGCCGGAATGCTGGACGCCGGGCAGGTCAGGGTAATGGAAGGCCGCGCTGAGGCGGTAACCAATGCCATTATGCAGGCAAAAGACAATGACGTCGTGCTGATTGCAGGTAAAGGGCACGAGGATTACCAGATTGTCGGCACGCAGCGTCTTGATTATTCAGACCGCGTGACCGCAGCGCGTTTGCTGGGGGTGATCGCATGA", 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"GTGGCAGATCGTAATTTGCGCGACCTTCTTGCTCCGTGGGTGGCTGGACTACCCGCGCGAGAACTGCGAGAGATGACGCTCGACAGCCGTGTGGCTGCGGCGGGCGATCTCTTTGTGGCAGTGGTGGGTCATCAGGCGGACGGGCGTCGTTATATCCCGCAGGCGATAGCGCAAGGCGTAGCTGCCATTATTGCAGAGGCGAAAGACGAGGCGAGTGACGGTGAGATTCGCGAAATGCACGGCGTACCAGTCGTCTATCTCAGCCAGCTCAATGAGCGTTTATCTGCGCTGGCGGGCCGCTTTTACCATGAGCCATCTGAAAACATGCGTCTGGTGGCGGTGACCGGCACCAATGGCAAGACCACCACCACCCAACTACTGGCGCAGTGGAGCCAGTTGCTCGGCGAAACCAGCGCAGTGATGGGGACGGTAGGTAACGGACTGTTGGGTAAAGTGATCCCGACGGAGAACACAACCGGTTCCGCAGTGGATGTTCAGCATGTGCTGGCCAGTCTGGTTGCGCAGGGCGCGACCTTCGGCGCTATGGAAGTCTCTTCTCACGGCCTGGTGCAGCATCGCGTGGCGGCGCTGAAATTTGCCGCCTCCGTGTTTACTAATTTGAGCCGCGACCATCTCGACTATCATGGCGATATGGCGCATTACGAGGCGGCAAAATGGATGCTTTATTCCACCCACCATCACGGTCAGGCAATCGTCAACGCCGATGATGAAGTTGGACGCCGCTGGCTGGCGTCGCTACCCGATGCGGTCGCGGTTTCAATGGAAGGGCATATCAACCCTAACTGTCACGGTCGTTGGCTGAAAGCGGAGGCGGTGGAGTACCACGACCGCGGAGTGACGATTCGTTTTGCTTCAAGCTGGGGTGAAGGCGAAATCGAAAGCTGCCTGATGGGCGCGTTTAACGTCAGCAACTTACTGCTGGCATTGGCGACGCTGCTGGCGCTGGGCTATCCGTTAACGGATTTGCTGAAAACCGCCGCGCGTTTGCAGCCGGTTTGCGGGCGTATGGAAGTGTTCACTGCGCCAGGCAAACCGACGGTGGTGGTGGATTACGCGCACACGCCGGATGCGCTGGAAAAAGCATTGCAGGCGGCGCGCCTGCACTGCGCCGGAAAATTGTGGTGCGTCTTTGGCTGTGGCGGGGATCGTGACAAAGGTAAGCGCCCACTCATGGGGGCCATTGCCGAAGAATTCGCGGATATCGTCGTGGTGACTGACGATAACCCGCGTACCGAGGAGCCGCGCGCCATTATCAACGATATTCTGGCCGGAATGCTGGACGCCGGGCAGGTCAGGGTAATGGAAGGCCGCGCTGAGGCGGTAACCAATGCCATTATGCAGGCAAAAGACAATGACGTCGTGCTGATTGCAGGTAAAGGGCACGAGGATTACCAGATTGTCGGCACGCAGCGTCTTGATTATTCAGACCGCGTGACCGCAGCGCGTTTGCTGGGGGTGATCGCATGA"}, "NZ_AOXE01000041.1_76": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000004.1_36": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000059.1_35": {"blast_result": {"is_perfect": false, "slen": 699860, "pident": 99.18, "marker": "NZ_AOXE01000059.1_35", "qseqid": "NZ_AOXE01000059.1_35|2879300656", "qstart": 1, "is_trunc": false, "sseq_msa_gaps": 0, "sseq": "ATGATCAGCAGAGTGACAGAAGCCCTAAGCAAAGTTAAGGGATCGATAGGAAGCAACGAGCGCCATGCCTTGCCTGGCGTGATCGGTGACGATCTTTTGCGGTTCGGGAAGCTGCCACTCTGCTTGTTCATTTGCATCATTTTAACGGCGGTGACGGTGGTCACGACGGCGCACCATACTCGTTTACTCACCGCTCAGCGTGAACAACTGGTTCTGGAGCGCGATGCATTGGACATTGAATGGCGCAACCTGATCCTTGAAGAAAATGCGCTCGGCGATCACAGCCGGGTAGAGCGGATCGCAACGGAAAAGCTGCAAATGCAGCATGTTGATCCGTCCCAAGAAAATATCGTAGTGCAAAAATAA", "bitscore": 660, "sseq_msa_p_gaps": 0.0, "evalue": 0.0, "gapopen": 0, "send": 143116, "has_perfect_match": false, "allele": 2879300656, "sstart": 142751, "allele_name": 1052128508, "start_idx": 142750.0, "qend": 366, "needs_revcomp": false, 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"ATGTTCCGGGGGGCAACGTTAGTCAATCTCGACAGTAAAGGGCGCCTGACCGTGCCGACCCGTTATCGGGAGCAACTGATCGAGAGCGCTACCGGTCAAATAGTATGTACCATTGACATCCATCACCCATGCCTGCTGCTTTACCCCCTGCCTGAATGGGAAATTATTGAGCAAAAGTTATCTCGTCTGTCGAGCATGAACCCGGTAGAACGTCGCGTACAGCGTTTACTGTTGGGCCATGCCAGTGAATGTCAGATGGATGGTGCAGGTCGATTACTGATCGCGCCAGTTCTGCGGCAACATGCCGGACTGACGAAAGAAGTGATGCTGGTTGGACAGTTCAACAAATTTGAGCTGTGGGATGAAACGACCTGGTATCAACAGGTCAAGGAAGATATCGACGCTGAACAGTCAGCTACCGAAACGTTATCGGAGCGGCTGCAGGACTTGTCTCTATAA", "bitscore": 837, "sseq_msa_p_gaps": 0.0, "evalue": 0.0, "gapopen": 0, "send": 141811, "has_perfect_match": false, "allele": 2467894309, "sstart": 141353, "allele_name": 1510445340, "start_idx": 141352.0, "qend": 459, "needs_revcomp": false, "is_extended": false, "mismatch": 2, "coverage": 1.0, "too_many_gaps": false, "end_idx": 141810.0, "trunc": false, "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "qlen": 459, "is_match": true, "length": 459}, "name": 1510445340, "seq": "ATGTTCCGGGGGGCAACGTTAGTCAATCTCGACAGTAAAGGGCGCCTGACCGTGCCGACCCGTTATCGGGAGCAACTGATCGAGAGCGCTACCGGTCAAATAGTATGTACCATTGACATCCATCACCCATGCCTGCTGCTTTACCCCCTGCCTGAATGGGAAATTATTGAGCAAAAGTTATCTCGTCTGTCGAGCATGAACCCGGTAGAACGTCGCGTACAGCGTTTACTGTTGGGCCATGCCAGTGAATGTCAGATGGATGGTGCAGGTCGATTACTGATCGCGCCAGTTCTGCGGCAACATGCCGGACTGACGAAAGAAGTGATGCTGGTTGGACAGTTCAACAAATTTGAGCTGTGGGATGAAACGACCTGGTATCAACAGGTCAAGGAAGATATCGACGCTGAACAGTCAGCTACCGAAACGTTATCGGAGCGGCTGCAGGACTTGTCTCTATAA"}, "NZ_AOXE01000085.1_57": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000053.1_166": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000024.1_35": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000083.1_47": {"blast_result": {"is_perfect": false, "slen": 699860, "pident": 99.68799999999999, "marker": "NZ_AOXE01000083.1_47", "qseqid": "NZ_AOXE01000083.1_47|48430411", "qstart": 1, "is_trunc": false, "sseq_msa_gaps": 0, "sseq": "ATGCGTAGCGCGCAGGTATACCGCTGGCAGATCCCCATGGACGCGGGGGTGGTTCTGCGCGACAGGCGGTTAAAAACTCGCGACGGGCTGTATGTTTGTCTGCGTGACGGCGAGCGTGAAGGGTGGGGAGAGATCTCCCCGCTGCCGGGCTTCAGTCAGGAAACGTGGGAAGAGGCGCAGACGGCGCTCCTGACATGGGTGAATGACTGGCTTCAGGGGAGCGAGGGATTACCGGAGATGCCTTCGGTCGCGTTTGGCGCAAGCTGCGCGCTGGCGGAACTGACTGGCGTCTTGCCGGAGGCGGCGGACTATCGCGCCGCGCCGTTATGCACTGGCGATCCTGACGATTTGGTACTGCGGCTTGCCGATATGCCCGGCGAGAAAATCGCTAAGGTCAAAGTGGGTCTCTATGAAGCGGTACGCGACGGCATGGTGGTTAATTTGCTGCTGGAGGCGATCCCGGATCTGCATCTGCGTCTGGATGCGAATCGCGCCTGGACGCCGCTAAAAGCCCAACAGTTCGCAAAGTATGTTAATCCGGATTACCGCGCTCGTATCGCCTTTCTCGAAGAACCGTGTAAGACGCGGGATGATTCCCGCGCCTTTGCCCGTGAAACCGGCATCGCGATTGCCTGGGACGAAAGTCTGCGCGAAGCGGATTTCACCTTTGAAGCCGAAGAGGGCGTCAGGGCTGTGGTTATCAAACCTACGCTGACCGGATCGCTTGATAAAGTGCGTGAGCAAGTCGCTGCCGCCCATGCGTTGGGACTGACGGCGGTCATCAGCTCTTCGATCGAGTCCAGCCTCGGCCTGACGCAACTGGCGCGGATTGCCGCCTGGTTGACGCCGGGAACGCTGCCCGGACTGGATACCTTGCATCTGATGCAGGCGCAACAGGTTCGCCCCTGGCCTGGTAACGCGTTGCCTTGTCTGAAGCGTGATGAGCTGGAACGACTGTTATGA", "bitscore": 1762, 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"ATGCGTAGCGCGCAGGTATACCGCTGGCAGATCCCCATGGACGCGGGGGTGGTTCTGCGCGACAGGCGGTTAAAAACTCGCGACGGGCTGTATGTTTGTCTGCGTGACGGCGAGCGTGAAGGGTGGGGAGAGATCTCCCCGCTGCCGGGCTTCAGTCAGGAAACGTGGGAAGAGGCGCAGACGGCGCTCCTGACATGGGTGAATGACTGGCTTCAGGGGAGCGAGGGATTACCGGAGATGCCTTCGGTCGCGTTTGGCGCAAGCTGCGCGCTGGCGGAACTGACTGGCGTCTTGCCGGAGGCGGCGGACTATCGCGCCGCGCCGTTATGCACTGGCGATCCTGACGATTTGGTACTGCGGCTTGCCGATATGCCCGGCGAGAAAATCGCTAAGGTCAAAGTGGGTCTCTATGAAGCGGTACGCGACGGCATGGTGGTTAATTTGCTGCTGGAGGCGATCCCGGATCTGCATCTGCGTCTGGATGCGAATCGCGCCTGGACGCCGCTAAAAGCCCAACAGTTCGCAAAGTATGTTAATCCGGATTACCGCGCTCGTATCGCCTTTCTCGAAGAACCGTGTAAGACGCGGGATGATTCCCGCGCCTTTGCCCGTGAAACCGGCATCGCGATTGCCTGGGACGAAAGTCTGCGCGAAGCGGATTTCACCTTTGAAGCCGAAGAGGGCGTCAGGGCTGTGGTTATCAAACCTACGCTGACCGGATCGCTTGATAAAGTGCGTGAGCAAGTCGCTGCCGCCCATGCGTTGGGACTGACGGCGGTCATCAGCTCTTCGATCGAGTCCAGCCTCGGCCTGACGCAACTGGCGCGGATTGCCGCCTGGTTGACGCCGGGAACGCTGCCCGGACTGGATACCTTGCATCTGATGCAGGCGCAACAGGTTCGCCCCTGGCCTGGTAACGCGTTGCCTTGTCTGAAGCGTGATGAGCTGGAACGACTGTTATGA"}, "NZ_AOXE01000083.1_45": {"blast_result": {"is_perfect": true, "slen": 699860, "pident": 100.0, "marker": "NZ_AOXE01000083.1_45", "qseqid": "NZ_AOXE01000083.1_45|1328452594", "qstart": 1, "is_trunc": false, "sseq_msa_gaps": 0, "sseq": "ATGGAATGGTTGGTTAAGAAATCGCATTATGTCAAAAAGAGGGCGTGCCATGTTCTGGTGCTGTGCGATAGCGGCGGTTCGCTAAAAATGATCGCCGAGGCGAATTCCATGATATTACTGAGTCCCGGCGATATCCTGTCGCCTTTACAGGATGCGCAGTATTGTATTAATCGGGAAAAACACCAGACCTTAAAAATCGTTGATGCACGCTGTTATTCCTGCGACGAATGGCAGCGGTTGACGCGCAAGCCATTATGA", "bitscore": 477, "sseq_msa_p_gaps": 0.0, "evalue": 2.919999999999999e-136, "gapopen": 0, "send": 635803, "has_perfect_match": true, "allele": 1328452594, "sstart": 635546, "allele_name": 1328452594, "start_idx": 635545.0, "qend": 258, "needs_revcomp": false, "is_extended": false, "mismatch": 0, "coverage": 1.0, "too_many_gaps": false, "end_idx": 635802.0, "trunc": false, "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "qlen": 258, "is_match": true, "length": 258}, "name": 1328452594, "seq": "ATGGAATGGTTGGTTAAGAAATCGCATTATGTCAAAAAGAGGGCGTGCCATGTTCTGGTGCTGTGCGATAGCGGCGGTTCGCTAAAAATGATCGCCGAGGCGAATTCCATGATATTACTGAGTCCCGGCGATATCCTGTCGCCTTTACAGGATGCGCAGTATTGTATTAATCGGGAAAAACACCAGACCTTAAAAATCGTTGATGCACGCTGTTATTCCTGCGACGAATGGCAGCGGTTGACGCGCAAGCCATTATGA"}, "NZ_AOXE01000081.1_210": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000081.1_211": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000081.1_212": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000011.1_77": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000007.1_20": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000081.1_215": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000085.1_58": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000072.1_73": {"seq": null, "name": null, "blast_result": null}, "NZ_APAO01000014.1_55": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000081.1_200": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000081.1_87": {"seq": null, "name": null, "blast_result": null}, "NZ_AOYX01000031.1_11": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000059.1_363": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000081.1_283": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000004.1_101": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000008.1_59": {"seq": null, "name": null, "blast_result": null}, "NZ_AOXE01000053.1_113": {"seq": null, "name": null, "blast_result": null}}} 1 {"AE014613-699860": {"NZ_AOXE01000059.1_60": {"name": 712233770, "seq": "ATGCCTTTTACACTTGGTCAACGCTGGATCAGCGATACAGAAAGCGAGCTGGGACTTGGAACCGTTGTTGCGATGGATGCGCGAACCGTCACCTTACTTTTCCCGTCCACGGGGGAAAACCGCCTGTATGCGCGCAGTGATTCTCCCGTGACCCGCGTCATGTTCAACCCTGGCGATACGATTACAAGCCATGAAGGCTGGCAGCTACATATCGATGAAGTAAAAGAAGAAAATGGCCTGCTTGTTTATGTCGGCACCCGCCTGGATACCGAAGAAACCAATGTGACGTTGCGCGAAGTTCTGCTCGACAGCAAGTTGGTTTTCAGTAAGCCCCAGGATCGTCTGTTCGCCGGTCAAATCGATCGAATGGATCGGTTCGCGCTGCGCTATCGCGCCCGTAAATTTCAGAGCGAGCAGTACCGGATGCCATACAGCGGCCTGCGCGGTCAGCGGACCAACCTGATCCCGCATCAGCTTAATATCGCTCATGATGTGGGTCGTCGCCACGCGCCGCGCGTACTGCTGGCGGATGAAGTGGGCTTAGGTAAAACCATTGAAGCCGGGATGATTCTGCATCAACAGTTATTATCCGGCGCGGCGGAACGCGTATTGATCATCGTTCCGGAAACCCTGCAACACCAGTGGCTGGTAGAAATGCTGCGCCGTTTCAACCTGCGCTTCGCGCTGTTCGATGACGAACGCTATACCGAAGCGCAGCACGACGCGTATAACCCGTTTGAAACCGAACAACTGGTGATCTGCTCGCTGGATTTCGCCCGCCGCAATAAGCAGCGTCTGGAACATTTGTGCGACGCCGAGTGGGATTTGCTGGTGGTCGACGAAGCGCATCATCTGGTGTGGAGCACCGATGCGCCGAGCCGTGAATATATGGCCATCGAACAGTTAGCTGAACGCGTGCCGGGCGTGCTGCTGCTGACCGCCACGCCAGAACAGCTGGGGATGGAAAGCCATTTCGCCCGTCTGCGCCTGCTCGATCCGAACCGTTTCCACGATTTCGAACAGTTTGTCGAAGAACAGAAAAACTACCGCCCTGTCGCCGATGCGGTGGCCATGCTGCTGGCGGGCAATAAACTCAGCAACGACGAACTGAACAGACTGGGCGATCTGATCGGCGAACAGGATATTGAACCGCTGTTACAGGCCGCTAATAGCGATCGCGACGACGCGCAGGCCGCCCGTGATGAGCTGGTGTCGATGCTGATGGATCGCCACGGTACCAGCCGCGTTCTGTTCCGCAACACCCGTAACGGCGTCAAGGGGTTCCCGAAACGTGAACTGCATACGGTAAAACTGCCGCTGCCGACCCAGTATCAGACCGCCATTAAGGTCTCCGGCATTATGGGCGCGCGTAAAAGCGCGGAAGATCGCGCCCGCGATATGCTCTATCCGGAACAAATTTATCAGGAGTTCGAAGGCGATACCGGCACCTGGTGGAACTTCGACCCACGCGTTGAGTGGCTGATGGGCTATCTGACCAGCCATCGTTCGCAAAAAGTGCTGGTGATCTGCGCCAAGGCGACCACCGCGTTACAGCTGGAGCAGGTGCTGCGCGAACGCGAAGGCATCCGCGCCGCCGTGTTCCATGAGGGCATGTCGATTATCGAACGCGACCGCGCCGCCGCCTGGTTCGCCGAAGAAGATACCGGCGCGCAGGTGCTGTTATGTTCCGAAATCGGCTCCGAAGGACGTAACTTCCAGTTTGCCAGCAATCTGGTGATGTTCGACTTGCCGTTTAACCCGGATCTGCTGGAACAGCGTATTGGTCGTCTGGATCGTATCGGCCAGGCGCATGATATCCAGATCCACGTCCCGTACCTGGAAAAAACCGCCCAGTCGGTGCTGGTTCGCTGGTATCACGAAGGGCTGGACGCCTTTGAGCACACTTGCCCGACCGGTCGCGCGATTTATGATTCAGCCTACGCCAGTCTGATTAACTATCTGGCCGCGCCTGAAGAAACCGACGGGTTTGACGATCTGATCAAATCCTGCCGCGAACAACATGAAGCGCTAAAAGCCCAGTTAGAACAGGGCCGCGACCGCCTGCTGGAGATCAACTCCAACGGTGGTGAAAAAGCCCAACAGCTTGCACAAAGCATTGAAGAACAGGACGACGACACCAACCTGATCGCGTTCGCCATGAACCTGTTCGATATCGTCGGCATTAACCAGGATGATCGCGGCGACAACCTGATCGTGCTGACGCCGTCCGACCACATGTTGGTGCCGGATTTCCCCGGCCTGCCGGAAGACGGTTGTACTATCACGTTTGAACGTGACGTAGCCCTGTCTCGCGAAGATGCGCAGTTTATTACCTGGGAACATCCGCTCATCCGTAACGGACTGGATCTGATCCTCTCCGGCGATACCGGCAGCAGCACCATTTCGCTGTTGAAAAATAAAGCGCTGCCCGTCGGCACGCTGCTGGTCGAACTGGTTTACGTCGTGGAAGCGCAGGCGCCGAAACAGCTACAACTGAACCGCTTCCTGCCGCCGACGCCGGTACGTATGCTGTTAGATAAAAACGGCAACAATCTGGCCGCCCAGGTCGAGTTTGAAACCTTCAACCGCCAGCTCAGCGCCGTGAATCGCCACACCGGTAGCAAACTGGTGAACGCCGTTCAACAGGACGTCCACGCCATTTTGCAACTGGGCGAGACGCAGATTGAACAGTCCGCCAGAGCGCTGATTGATAACGCGCGCCGCGAGGCAGATGAAAAACTGTCCGGGGAACTGTCGCGTCTGGAAGCGCTGCGCGCCGTCAACCCGAACATCCGCGACGACGAACTTGCCGCTATCGACAGCAACCGTCAGCAGGTGCTGGAAAGCCTGAATCAGGCAGGCTGGCGTCTGGACGCGCTGCGTCTTATCGTCGTCACGCACCAATAA", "blast_result": {"qseqid": "NZ_AOXE01000059.1_60|1987381665", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 99.96600000000001, "length": 2908, "mismatch": 0, "gapopen": 1, "qstart": 1, "qend": 2908, "sstart": 112697, "send": 109791, "evalue": 0.0, "bitscore": 5363.0, "qlen": 2908, "slen": 699860, "sseq": "ATGCCTTTTACACTTGGTCAACGCTGGATCAGCGATACAGAAAGCGAGCTGGGACTTGGAACCGTTGTTGCGATGGATGCGCGAACCGTCACCTTACTTTTCCCGTCCACGGGGGAAAACCGCCTGTATGCGCGCAGTGATTCTCCCGTGACCCGCGTCATGTTCAACCCTGGCGATACGATTACAAGCCATGAAGGCTGGCAGCTACATATCGATGAAGTAAAAGAAGAAAATGGCCTGCTTGTTTATGTCGGCACCCGCCTGGATACCGAAGAAACCAATGTGACGTTGCGCGAAGTTCTGCTCGACAGCAAGTTGGTTTTCAGTAAGCCCCAGGATCGTCTGTTCGCCGGTCAAATCGATCGAATGGATCGGTTCGCGCTGCGCTATCGCGCCCGTAAATTTCAGAGCGAGCAGTACCGGATGCCATACAGCGGCCTGCGCGGTCAGCGGACCAACCTGATCCCGCATCAGCTTAATATCGCTCATGATGTGGGTCGTCGCCACGCGCCGCGCGTACTGCTGGCGGATGAAGTGGGCTTAGGTAAAACCATTGAAGCCGGGATGATTCTGCATCAACAGTT-ATTATCCGGCGCGGCGGAACGCGTATTGATCATCGTTCCGGAAACCCTGCAACACCAGTGGCTGGTAGAAATGCTGCGCCGTTTCAACCTGCGCTTCGCGCTGTTCGATGACGAACGCTATACCGAAGCGCAGCACGACGCGTATAACCCGTTTGAAACCGAACAACTGGTGATCTGCTCGCTGGATTTCGCCCGCCGCAATAAGCAGCGTCTGGAACATTTGTGCGACGCCGAGTGGGATTTGCTGGTGGTCGACGAAGCGCATCATCTGGTGTGGAGCACCGATGCGCCGAGCCGTGAATATATGGCCATCGAACAGTTAGCTGAACGCGTGCCGGGCGTGCTGCTGCTGACCGCCACGCCAGAACAGCTGGGGATGGAAAGCCATTTCGCCCGTCTGCGCCTGCTCGATCCGAACCGTTTCCACGATTTCGAACAGTTTGTCGAAGAACAGAAAAACTACCGCCCTGTCGCCGATGCGGTGGCCATGCTGCTGGCGGGCAATAAACTCAGCAACGACGAACTGAACAGACTGGGCGATCTGATCGGCGAACAGGATATTGAACCGCTGTTACAGGCCGCTAATAGCGATCGCGACGACGCGCAGGCCGCCCGTGATGAGCTGGTGTCGATGCTGATGGATCGCCACGGTACCAGCCGCGTTCTGTTCCGCAACACCCGTAACGGCGTCAAGGGGTTCCCGAAACGTGAACTGCATACGGTAAAACTGCCGCTGCCGACCCAGTATCAGACCGCCATTAAGGTCTCCGGCATTATGGGCGCGCGTAAAAGCGCGGAAGATCGCGCCCGCGATATGCTCTATCCGGAACAAATTTATCAGGAGTTCGAAGGCGATACCGGCACCTGGTGGAACTTCGACCCACGCGTTGAGTGGCTGATGGGCTATCTGACCAGCCATCGTTCGCAAAAAGTGCTGGTGATCTGCGCCAAGGCGACCACCGCGTTACAGCTGGAGCAGGTGCTGCGCGAACGCGAAGGCATCCGCGCCGCCGTGTTCCATGAGGGCATGTCGATTATCGAACGCGACCGCGCCGCCGCCTGGTTCGCCGAAGAAGATACCGGCGCGCAGGTGCTGTTATGTTCCGAAATCGGCTCCGAAGGACGTAACTTCCAGTTTGCCAGCAATCTGGTGATGTTCGACTTGCCGTTTAACCCGGATCTGCTGGAACAGCGTATTGGTCGTCTGGATCGTATCGGCCAGGCGCATGATATCCAGATCCACGTCCCGTACCTGGAAAAAACCGCCCAGTCGGTGCTGGTTCGCTGGTATCACGAAGGGCTGGACGCCTTTGAGCACACTTGCCCGACCGGTCGCGCGATTTATGATTCAGCCTACGCCAGTCTGATTAACTATCTGGCCGCGCCTGAAGAAACCGACGGGTTTGACGATCTGATCAAATCCTGCCGCGAACAACATGAAGCGCTAAAAGCCCAGTTAGAACAGGGCCGCGACCGCCTGCTGGAGATCAACTCCAACGGTGGTGAAAAAGCCCAACAGCTTGCACAAAGCATTGAAGAACAGGACGACGACACCAACCTGATCGCGTTCGCCATGAACCTGTTCGATATCGTCGGCATTAACCAGGATGATCGCGGCGACAACCTGATCGTGCTGACGCCGTCCGACCACATGTTGGTGCCGGATTTCCCCGGCCTGCCGGAAGACGGTTGTACTATCACGTTTGAACGTGACGTAGCCCTGTCTCGCGAAGATGCGCAGTTTATTACCTGGGAACATCCGCTCATCCGTAACGGACTGGATCTGATCCTCTCCGGCGATACCGGCAGCAGCACCATTTCGCTGTTGAAAAATAAAGCGCTGCCCGTCGGCACGCTGCTGGTCGAACTGGTTTACGTCGTGGAAGCGCAGGCGCCGAAACAGCTACAACTGAACCGCTTCCTGCCGCCGACGCCGGTACGTATGCTGTTAGATAAAAACGGCAACAATCTGGCCGCCCAGGTCGAGTTTGAAACCTTCAACCGCCAGCTCAGCGCCGTGAATCGCCACACCGGTAGCAAACTGGTGAACGCCGTTCAACAGGACGTCCACGCCATTTTGCAACTGGGCGAGACGCAGATTGAACAGTCCGCCAGAGCGCTGATTGATAACGCGCGCCGCGAGGCAGATGAAAAACTGTCCGGGGAACTGTCGCGTCTGGAAGCGCTGCGCGCCGTCAACCCGAACATCCGCGACGACGAACTTGCCGCTATCGACAGCAACCGTCAGCAGGTGCTGGAAAGCCTGAATCAGGCAGGCTGGCGTCTGGACGCGCTGCGTCTTATCGTCGTCACGCACCAATAA", "coverage": 1.0, "is_trunc": false, "marker": "NZ_AOXE01000059.1_60", "allele": 1987381665, "is_match": true, "allele_name": 712233770, "is_perfect": false, "has_perfect_match": false, "start_idx": 109790.0, "end_idx": 112696.0, "needs_revcomp": true, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOXE01000059.1_129": {"name": 278162969, "seq": "ATGGGTAAAATTATTGGTATCGACCTGGGTACTACCAACTCTTGTGTAGCGATTATGGATGGAACGCAGGCACGCGTGCTGGAGAACGCCGAGGGCGATCGCACTACGCCTTCTATCATTGCTTATACCCAGGATGGTGAAACTCTGGTTGGTCAGCCGGCTAAACGTCAGGCAGTGACAAACCCGCAAAACACCCTGTTTGCGATTAAACGCCTGATTGGCCGCCGCTTCCAGGACGAAGAAGTTCAACGTGACGTTTCTATCATGCCGTACAAAATCATCGGCGCCGACAACGGCGACGCATGGCTTGATGTGAAAGGTCAGAAAATGGCGCCGCCGCAGATTTCTGCCGAAGTGCTGAAGAAAATGAAGAAAACGGCTGAAGATTATCTGGGCGAACCGGTAACTGAAGCGGTTATCACCGTACCGGCTTACTTTAACGATGCGCAGCGTCAGGCTACCAAAGATGCTGGTCGTATCGCGGGGCTGGAAGTTAAACGTATCATCAACGAACCGACTGCCGCAGCGCTGGCTTACGGTCTGGATAAAGAAGTCGGCAACCGTACTATCGCGGTTTACGACCTCGGTGGTGGTACTTTCGATATCTCTATTATCGAAATCGACGAAGTTGATGGCGAAAAAACCTTTGAAGTTCTGGCAACCAACGGTGATACCCACCTGGGTGGTGAAGACTTCGATACCCGCCTGATCAACTACCTCGTTGACGAGTTTAAGAAAGATCAGGGCATCGACCTGCGTAACGATCCGCTGGCCATGCAGCGCCTGAAAGAAGCCGCAGAAAAAGCCAAAATCGAGCTGTCTTCTGCGCAGCAGACCGACGTGAACCTGCCGTACATTACCGCAGATGCCACCGGTCCGAAACACATGAACATCAAAGTGACCCGTGCGAAACTGGAAAGCCTGGTTGAAGATCTGGTGAACCGTTCTATCGAGCCGCTGAAAGTCGCACTGCAGGACGCTGGCCTGTCCGTGTCTGATATCAACGACGTGATCCTCGTCGGCGGTCAGACCCGTATGCCAATGGTGCAGAAAAAAGTGGCTGAGTTCTTCGGTAAAGAGCCGCGTAAAGACGTTAACCCGGACGAAGCTGTGGCTATCGGCGCAGCGGTACAGGGCGGCGTATTGACCGGTGATGTGAAAGACGTACTGCTGCTGGACGTTACCCCGCTGTCTCTGGGTATCGAAACGATGGGTGGCGTGATGACTCCGCTTATCACCAAAAACACCACCATCCCGACCAAGCACAGCCAGGTGTTCTCTACTGCGGAAGACAACCAGTCTGCGGTAACCATCCATGTGCTGCAGGGTGAGCGTAAACGTGCGTCTGATAACAAATCTCTGGGTCAGTTCAACCTGGATGGCATCAACCCGGCGCCGCGCGGTATGCCGCAGATCGAAGTCACCTTCGATATCGATGCTGACGGTATCCTGCACGTCTCCGCGAAAGATAAAAATAGCGGTAAAGAGCAGAAGATCACTATCAAGGCGTCTTCTGGTCTGAACGAGGAAGAAATTCAGAAAATGGTTCGCGATGCAGAAGCGAACGCTGAATCCGACCGTAAGTTCGAAGAGCTGGTTCAGACCCGTAACCAGGGTGACCATCTGCTGCACAGCACCCGTAAGCAGGTTGAAGAAGCAGGCGATAAACTGCCGGCTGATGACAAAACCGCTATCGAGTCTGCGCTGAGCGCGCTGGAAACTGCCCTGAAAGGCGAAGATAAAGCCGCTATCGAAGCGAAAATGCAGGAGCTGGCGCAGGTTTCCCAGAAACTGATGGAAATCGCTCAGCAGCAACATGCGCAGCAGCAGGCTGGCTCCGCCGACGCTTCTGCAAACAATGCGAAAGATGACGACGTTGTCGACGCTGAGTTTGAAGAAGTAAAAGATAAAAAATAA", "blast_result": {"qseqid": "NZ_AOXE01000059.1_129|2395931929", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 99.73899999999999, "length": 1917, "mismatch": 5, "gapopen": 0, "qstart": 1, "qend": 1917, "sstart": 11594, "send": 13510, "evalue": 0.0, "bitscore": 3513.0, "qlen": 1917, "slen": 699860, "sseq": "ATGGGTAAAATTATTGGTATCGACCTGGGTACTACCAACTCTTGTGTAGCGATTATGGATGGAACGCAGGCACGCGTGCTGGAGAACGCCGAGGGCGATCGCACTACGCCTTCTATCATTGCTTATACCCAGGATGGTGAAACTCTGGTTGGTCAGCCGGCTAAACGTCAGGCAGTGACAAACCCGCAAAACACCCTGTTTGCGATTAAACGCCTGATTGGCCGCCGCTTCCAGGACGAAGAAGTTCAACGTGACGTTTCTATCATGCCGTACAAAATCATCGGCGCCGACAACGGCGACGCATGGCTTGATGTGAAAGGTCAGAAAATGGCGCCGCCGCAGATTTCTGCCGAAGTGCTGAAGAAAATGAAGAAAACGGCTGAAGATTATCTGGGCGAACCGGTAACTGAAGCGGTTATCACCGTACCGGCTTACTTTAACGATGCGCAGCGTCAGGCTACCAAAGATGCTGGTCGTATCGCGGGGCTGGAAGTTAAACGTATCATCAACGAACCGACTGCCGCAGCGCTGGCTTACGGTCTGGATAAAGAAGTCGGCAACCGTACTATCGCGGTTTACGACCTCGGTGGTGGTACTTTCGATATCTCTATTATCGAAATCGACGAAGTTGATGGCGAAAAAACCTTTGAAGTTCTGGCAACCAACGGTGATACCCACCTGGGTGGTGAAGACTTCGATACCCGCCTGATCAACTACCTCGTTGACGAGTTTAAGAAAGATCAGGGCATCGACCTGCGTAACGATCCGCTGGCCATGCAGCGCCTGAAAGAAGCCGCAGAAAAAGCCAAAATCGAGCTGTCTTCTGCGCAGCAGACCGACGTGAACCTGCCGTACATTACCGCAGATGCCACCGGTCCGAAACACATGAACATCAAAGTGACCCGTGCGAAACTGGAAAGCCTGGTTGAAGATCTGGTGAACCGTTCTATCGAGCCGCTGAAAGTCGCACTGCAGGACGCTGGCCTGTCCGTGTCTGATATCAACGACGTGATCCTCGTCGGCGGTCAGACCCGTATGCCAATGGTGCAGAAAAAAGTGGCTGAGTTCTTCGGTAAAGAGCCGCGTAAAGACGTTAACCCGGACGAAGCTGTGGCTATCGGCGCAGCGGTACAGGGCGGCGTATTGACCGGTGATGTGAAAGACGTACTGCTGCTGGACGTTACCCCGCTGTCTCTGGGTATCGAAACGATGGGTGGCGTGATGACTCCGCTTATCACCAAAAACACCACCATCCCGACCAAGCACAGCCAGGTGTTCTCTACTGCGGAAGACAACCAGTCTGCGGTAACCATCCATGTGCTGCAGGGTGAGCGTAAACGTGCGTCTGATAACAAATCTCTGGGTCAGTTCAACCTGGATGGCATCAACCCGGCGCCGCGCGGTATGCCGCAGATCGAAGTCACCTTCGATATCGATGCTGACGGTATCCTGCACGTCTCCGCGAAAGATAAAAATAGCGGTAAAGAGCAGAAGATCACTATCAAGGCGTCTTCTGGTCTGAACGAGGAAGAAATTCAGAAAATGGTTCGCGATGCAGAAGCGAACGCTGAATCCGACCGTAAGTTCGAAGAGCTGGTTCAGACCCGTAACCAGGGTGACCATCTGCTGCACAGCACCCGTAAGCAGGTTGAAGAAGCAGGCGATAAACTGCCGGCTGATGACAAAACCGCTATCGAGTCTGCGCTGAGCGCGCTGGAAACTGCCCTGAAAGGCGAAGATAAAGCCGCTATCGAAGCGAAAATGCAGGAGCTGGCGCAGGTTTCCCAGAAACTGATGGAAATCGCTCAGCAGCAACATGCGCAGCAGCAGGCTGGCTCCGCCGACGCTTCTGCAAACAATGCGAAAGATGACGACGTTGTCGACGCTGAGTTTGAAGAAGTAAAAGATAAAAAATAA", "coverage": 1.0, "is_trunc": false, "marker": "NZ_AOXE01000059.1_129", "allele": 2395931929, "is_match": true, "allele_name": 278162969, "is_perfect": false, "has_perfect_match": false, "start_idx": 11593.0, "end_idx": 13509.0, "needs_revcomp": false, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOXE01000059.1_42": {"name": 1495737522, "seq": "ATGAGCCAGCAAGTCATTATTTTTGATACGACCTTACGCGACGGCGAACAAGCGTTACAGGCCAGCCTGAGCGCGAAAGAGAAGCTGCAGATTGCCCTGGCCCTTGAGCGCATGGGTGTCGATGTCATGGAAGTGGGCTTCCCGGTCTCTTCTCCGGGTGATTTTGAATCCGTCCAAACCATCGCCCGCACCATCAAAAACAGCCGCGTTTGCGCCCTGGCGCGTTGTGTAGAAAAAGACATCGACGTTGCGGCACAGGCGCTGAAGGTCGCCGACGCGTTTCGTATCCATACTTTTATCGCCACCTCGCCAATGCACATCGCCACCAAGCTGCGCAGCACGCTGGATGAGGTCATCGAACGCGCGGTATACATGGTTAAGCGGGCGCGTAATTACACTGATGACGTGGAGTTCTCCTGCGAGGATGCTGGCCGGACGCCTGTTGACGATCTGGCGCGCGTGGTGGAAGCCGCTATAAACGCCGGCGCGAGAACCATCAATATTCCCGATACCGTGGGCTATACCATGCCGTTTGAGTTCGCGGGAATCATTTCCGGTCTGTATGAACGTGTCCCCAATATCGACAAAGCTATCATCTCCGTTCATACCCACGACGATTTAGGGATAGCGGTAGGCAACTCGCTGGCGGCAGTACATGCGGGCGCGCGTCAAGTTGAAGGCGCGATGAACGGTATCGGAGAACGTGCCGGTAACTGCGCGCTGGAAGAGGTGATCATGGCGATTAAAGTGCGCAAAGACATCATAAACGTACACACCAACATCAATCACCACGAAATCTGGCGCACCAGCCAGACCGTCAGCCAGATCTGTAACATGCCGATCCCGGCCAACAAAGCGATTGTTGGCAGCGGCGCTTTTGCCCACTCTTCCGGCATCCACCAGGATGGCGTCCTCAAGAACCGCGAAAACTATGAAATCATGACGCCAGAGTCCATCGGTCTGAACCAGATACAGCTGAACCTGACCTCCCGCTCTGGCCGTGCCGCCGTGAAACATCGCATGGAAGAGATGGGTTACAAGGACACAGACTACAACATGGGCCACCTGTACGACGCGTTCCTGAAGCTGGCGGACAAAAAAGGCCAGGTGTTCGACTATGACCTGGAAGCGCTGGCGTTTATTAATAAACAGCAAGAAGAACCAGAGCATTTCCGTCTGGATTACTTCAGCGTGCAGTCCGGCTCCAGCGATATCGCCACCGCTTCCGTGAAGCTGGCCTGTGGTGAAGAGATCAAGGCCGAGGCGGCGAACGGCAACGGCCCGGTCGACGCCATCTATCAGGCGATTAACCGCATCACTGGCTACGACGTTGAGTTGGTTAAATACGACCTGAACGCCAAAGGCCAGGGCAAAGACGCGCTGGGTCAGGTCGATATCGTCGTGAACCATCATGGTCGCCGCTTCCACGGCGTCGGGCTGGCGACGGATATCGTCGAATCCTCCGCCAAAGCGATGGTACACGTACTGAACAATATCTGGCGCGCCGCCGAAGTTGAAAAAGAATTGCAACGCAAAGCTCAAAATAAAGAGAACAACAAGGAAACCGTGTAA", "blast_result": {"qseqid": "NZ_AOXE01000059.1_42|1433795029", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 99.87299999999999, "length": 1572, "mismatch": 1, "gapopen": 1, "qstart": 1, "qend": 1571, "sstart": 135143, "send": 133572, "evalue": 0.0, "bitscore": 2891.0, "qlen": 1571, "slen": 699860, "sseq": "ATGAGCCAGCAAGTCATTATTTTTGATACGACCTTACGCGACGGCGAACAAGCGTTACAGGCCAGCCTGAGCGCGAAAGAGAAGCTGCAGATTGCCCTGGCCCTTGAGCGCATGGGTGTCGATGTCATGGAAGTGGGCTTCCCGGTCTCTTCTCCGGGTGATTTTGAATCCGTCCAAACCATCGCCCGCACCATCAAAAACAGCCGCGTTTGCGCCCTGGCGCGTTGTGTAGAAAAAGACATCGACGTTGCGGCACAGGCGCTGAAGGTCGCCGACGCGTTTCGTATCCATACTTTTATCGCCACCTCGCCAATGCACATCGCCACCAAGCTGCGCAGCACGCTGGATGAGGTCATCGAACGCGCGGTATACATGGTTAAGCGGGCGCGTAATTACACTGATGACGTGGAGTTCTCCTGCGAGGATGCTGGCCGGACGCCTGTTGACGATCTGGCGCGCGTGGTGGAAGCCGCTATAAACGCCGGCGCGAGAACCATCAATATTCCCGATACCGTGGGCTATACCATGCCGTTTGAGTTCGCGGGAATCATTTCCGGTCTGTATGAACGTGTCCCCAATATCGACAAAGCTATCATCTCCGTTCATACCCACGACGATTTAGGGATAGCGGTAGGCAACTCGCTGGCGGCAGTACATGCGGGCGCGCGTCAAGTTGAAGGCGCGATGAACGGTATCGGAGAACGTGCCGGTAACTGCGCGCTGGAAGAGGTGATCATGGCGATTAAAGTGCGCAAAGACATCATAAACGTACACACCAACATCAATCACCACGAAATCTGGCGCACCAGCCAGACCGTCAGCCAGATCTGTAACATGCCGATCCCGGCCAACAAAGCGATTGTTGGCAGCGGCGCTTTTGCCCACTCTTCCGGCATCCACCAGGATGGCGTCCTCAAGAACCGCGAAAACTATGAAATCATGACGCCAGAGTCCATCGGTCTGAACCAGATACAGCTGAACCTGACCTCCCGCTCTGGCCGTGCCGCCGTGAAACATCGCATGGAAGAGATGGGTTACAAGGACACAGACTACAACATGGGCCACCTGTACGACGCGTTCCTGAAGCTGGCGGACAAAAAAGGCCAGGTGTTCGACTATGACCTGGAAGCGCTGGCGTTTATTAATAAACAGCAAGAAGAACCAGAGCATTTCCGTCTGGATTACTTCAGCGTGCAGTCCGGCTCCAGCGATATCGCCACCGCTTCCGTGAAGCTGGCCTGTGGTGAAGAGATCAAGGCCGAGGCGGCGAACGGCAACGGCCCGGTCGACGCCATCTATCAGGCGATTAACCGCATCACTGGCTACGACGTTGAGTTGGTTAAATACGACCTGAACGCCAAAGGCCAGGGCAAAGACGCGCTGGGTCAGGTCGATATCGTCGTGAACCATCATGGTCGCCGCTTCCACGGCGTCGGGCTGGCGACGGATATCGTCGAATCCTCCGCCAAAGCGATGGTACACGTACTGAACAATATCTGGCGCGCCGCCGAAGTTGAAAAAGAATTGCAACGCAAAGCTCAAAATAAAGAGAACAACAAGGAAACCGTGTAA", "coverage": 1.0006365372374284, "is_trunc": false, "marker": "NZ_AOXE01000059.1_42", "allele": 1433795029, "is_match": true, "allele_name": 1495737522, "is_perfect": false, "has_perfect_match": false, "start_idx": 133571.0, "end_idx": 135142.0, "needs_revcomp": true, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOXE01000059.1_32": {"name": 2061008354, "seq": "GGTGGCAGATCGTAATTTGCGCGACCTTCTTGCTCCGTGGGTGGCTGGACTACCCGCGCGAGAACTGCGAGAGATGACGCTCGACAGCCGTGTGGCTGCGGCGGGCGATCTCTTTGTGGCAGTGGTGGGTCATCAGGCGGACGGGCGTCGTTATATCCCGCAGGCGATAGCGCAAGGCGTAGCTGCCATTATTGCAGAGGCGAAAGACGAGGCGAGTGACGGTGAGATTCGCGAAATGCACGGCGTACCAGTCGTCTATCTCAGCCAGCTCAATGAGCGTTTATCTGCGCTGGCGGGCCGCTTTTACCATGAGCCATCTGAAAACATGCGTCTGGTGGCGGTGACCGGCACCAATGGCAAGACCACCACCACCCAACTACTGGCGCAGTGGAGCCAGTTGCTCGGCGAAACCAGCGCAGTGATGGGGACGGTAGGTAACGGACTGTTGGGTAAAGTGATCCCGACGGAGAACACAACCGGTTCCGCAGTGGATGTTCAGCATGTGCTGGCCAGTCTGGTTGCGCAGGGCGCGACCTTCGGCGCTATGGAAGTCTCTTCTCACGGCCTGGTGCAGCATCGCGTGGCGGCGCTGAAATTTGCCGCCTCCGTGTTTACTAATTTGAGCCGCGACCATCTCGACTATCATGGCGATATGGCGCATTACGAGGCGGCAAAATGGATGCTTTATTCCACCCACCATCACGGTCAGGCAATCGTCAACGCCGATGATGAAGTTGGACGCCGCTGGCTGGCGTCGCTACCCGATGCGGTCGCGGTTTCAATGGAAGGGCATATCAACCCTAACTGTCACGGTCGTTGGCTGAAAGCGGAGGCGGTGGAGTACCACGACCGCGGAGTGACGATTCGTTTTGCTTCAAGCTGGGGTGAAGGCGAAATCGAAAGCTGCCTGATGGGCGCGTTTAACGTCAGCAACTTACTGCTGGCATTGGCGACGCTGCTGGCGCTGGGCTATCCGTTAACGGATTTGCTGAAAACCGCCGCGCGTTTGCAGCCGGTTTGCGGGCGTATGGAAGTGTTCACTGCGCCAGGCAAACCGACGGTGGTGGTGGATTACGCGCACACGCCGGATGCGCTGGAAAAAGCATTGCAGGCGGCGCGCCTGCACTGCGCCGGAAAATTGTGGTGCGTCTTTGGCTGTGGCGGGGATCGTGACAAAGGTAAGCGCCCACTCATGGGGGCCATTGCCGAAGAATTCGCGGATATCGTCGTGGTGACTGACGATAACCCGCGTACCGAGGAGCCGCGCGCCATTATCAACGATATTCTGGCCGGAATGCTGGACGCCGGGCAGGTCAGGGTAATGGAAGGCCGCGCTGAGGCGGTAACCAATGCCATTATGCAGGCAAAAGACAATGACGTCGTGCTGATTGCAGGTAAAGGGCACGAGGATTACCAGATTGTCGGCACGCAGCGTCTTGATTATTCAGACCGCGTGACCGCAGCGCGTTTGCTGGGGGTGATCGCATGA", "blast_result": {"qseqid": "NZ_AOXE01000059.1_32|1933796240", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 99.396, "length": 1489, "mismatch": 9, "gapopen": 0, "qstart": 1, "qend": 1489, "sstart": 144884, "send": 146372, "evalue": 0.0, "bitscore": 2700.0, "qlen": 1489, "slen": 699860, "sseq": "GGTGGCAGATCGTAATTTGCGCGACCTTCTTGCTCCGTGGGTGGCTGGACTACCCGCGCGAGAACTGCGAGAGATGACGCTCGACAGCCGTGTGGCTGCGGCGGGCGATCTCTTTGTGGCAGTGGTGGGTCATCAGGCGGACGGGCGTCGTTATATCCCGCAGGCGATAGCGCAAGGCGTAGCTGCCATTATTGCAGAGGCGAAAGACGAGGCGAGTGACGGTGAGATTCGCGAAATGCACGGCGTACCAGTCGTCTATCTCAGCCAGCTCAATGAGCGTTTATCTGCGCTGGCGGGCCGCTTTTACCATGAGCCATCTGAAAACATGCGTCTGGTGGCGGTGACCGGCACCAATGGCAAGACCACCACCACCCAACTACTGGCGCAGTGGAGCCAGTTGCTCGGCGAAACCAGCGCAGTGATGGGGACGGTAGGTAACGGACTGTTGGGTAAAGTGATCCCGACGGAGAACACAACCGGTTCCGCAGTGGATGTTCAGCATGTGCTGGCCAGTCTGGTTGCGCAGGGCGCGACCTTCGGCGCTATGGAAGTCTCTTCTCACGGCCTGGTGCAGCATCGCGTGGCGGCGCTGAAATTTGCCGCCTCCGTGTTTACTAATTTGAGCCGCGACCATCTCGACTATCATGGCGATATGGCGCATTACGAGGCGGCAAAATGGATGCTTTATTCCACCCACCATCACGGTCAGGCAATCGTCAACGCCGATGATGAAGTTGGACGCCGCTGGCTGGCGTCGCTACCCGATGCGGTCGCGGTTTCAATGGAAGGGCATATCAACCCTAACTGTCACGGTCGTTGGCTGAAAGCGGAGGCGGTGGAGTACCACGACCGCGGAGTGACGATTCGTTTTGCTTCAAGCTGGGGTGAAGGCGAAATCGAAAGCTGCCTGATGGGCGCGTTTAACGTCAGCAACTTACTGCTGGCATTGGCGACGCTGCTGGCGCTGGGCTATCCGTTAACGGATTTGCTGAAAACCGCCGCGCGTTTGCAGCCGGTTTGCGGGCGTATGGAAGTGTTCACTGCGCCAGGCAAACCGACGGTGGTGGTGGATTACGCGCACACGCCGGATGCGCTGGAAAAAGCATTGCAGGCGGCGCGCCTGCACTGCGCCGGAAAATTGTGGTGCGTCTTTGGCTGTGGCGGGGATCGTGACAAAGGTAAGCGCCCACTCATGGGGGCCATTGCCGAAGAATTCGCGGATATCGTCGTGGTGACTGACGATAACCCGCGTACCGAGGAGCCGCGCGCCATTATCAACGATATTCTGGCCGGAATGCTGGACGCCGGGCAGGTCAGGGTAATGGAAGGCCGCGCTGAGGCGGTAACCAATGCCATTATGCAGGCAAAAGACAATGACGTCGTGCTGATTGCAGGTAAAGGGCACGAGGATTACCAGATTGTCGGCACGCAGCGTCTTGATTATTCAGACCGCGTGACCGCAGCGCGTTTGCTGGGGGTGATCGCATGA", "coverage": 1.0, "is_trunc": false, "marker": "NZ_AOXE01000059.1_32", "allele": 1933796240, "is_match": true, "allele_name": 2061008354, "is_perfect": false, "has_perfect_match": false, "start_idx": 144883.0, "end_idx": 146371.0, "needs_revcomp": false, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOXE01000033.1_26": {"name": 3680021500, "seq": "ATGCTGAGTATTCTCTGGAATCTGGCTGCATTCATCATCGCACTGGGCGTGCTGATCACTGTGCATGAATTTGGTCATTTCTGGGTTGCCCGGCGCTGCGGTGTGCGAGTTGAGCGCTTTTCCATCGGTTTTGGCAAAGCGCTCTGGCGTCGTACCGATCGGTACGGCACCGAGTATGTCATCGCCCTGATCCCGCTGGGCGGCTACGTCAAAATGCTGGATGAGCGCGCCGAACCGGTAGCGCCGGAATTGCGTCGTCACGCCTTCAATAACAAAACGGTGGGCCAGCGCGCCGCAATTATTGCCGCAGGTCCGGTTGCGAACTTCATTTTTGCTATCTTTGCTTACTGGCTGGTCTTTATCATCGGCGTCCCTGGCGTTCGTCCGGTCATTGGCGAAATAACGCCCAACTCGATTGCTGCGCAGGCGCAAATTGCGCCTGGTACGGAACTTAAAGCCGTTGATGGTATCGAAACCCCTGATTGGGATGCCGTGCGTTTACAACTGGTGTCCAAAATTGGCGATCAGCAGACGACGGTGAGCGTCGCGCCGTTTGGCAGCGACCAGCGGCAGGACAAAACGCTTGATTTACGTCACTGGGCATTTGAGCCTGATAAGCAAGATCCTGTATCTTCTTTAGGGATTCGGCCCCGCGGGCCACAGATTGAACCGGTACTGTCAGAAGTGCAGGCGAATTCCGCAGCCAGTAAAGCGGGTTTGCAAGCAGGCGACAGGATCGTTAAAGTCGATGGTCAGCCGTTAACGCAGTGGATGAAATTCGTGACGTTTGTACGTGATAATCCCGGTAAGCCGTTAGCGTTAGAGATTGAAAGGCAGGGGAGCGCCTTGTCGTTGACGTTAACGCCGGATACGAAATCGGTTAACGGAAAGGCGGAAGGGTTTGCAGGCGTGGTGCCTAAAATTATTCCTCTGCCGGAAGAGTACAAGACTATACGCCAGTATGGGCCTTTTAGCGCCATCCTCGAAGCCACGGATAAGACGTGGCAGTTGATGAAGCTGACGGTCAATATGCTGGGTAAATTGATAACCGGTGATGTGAAACTGAACAACCTCAGTGGGCCGATTTCTATCGCTCAGGGGGCTGGGATGTCAGCGGAGTTCGGGGTGATTTATTACCTGATGTTCCTTGCGCTAATCAGCGTGAACTTAGGGATAATTAACCTGTTTCCGCTGCCCGTTCTTGACGGGGGTCATCTGCTGTTCCTGGCGATTGAAAAGCTTAAGGGCGGGCCGGTATCCGAGCGGGTTCAAGACTTTAGTTATCGCATTGGCTCGATTTTGCTGGTGTTGTTAATGGGGCTTGCACTTTTCAATGATTTCTCTCGGTTGTAA", "blast_result": {"qseqid": "NZ_AOXE01000033.1_26|2174459836", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 99.926, "length": 1353, "mismatch": 1, "gapopen": 0, "qstart": 1, "qend": 1353, "sstart": 257871, "send": 259223, "evalue": 0.0, "bitscore": 2494.0, "qlen": 1353, "slen": 699860, "sseq": "ATGCTGAGTATTCTCTGGAATCTGGCTGCATTCATCATCGCACTGGGCGTGCTGATCACTGTGCATGAATTTGGTCATTTCTGGGTTGCCCGGCGCTGCGGTGTGCGAGTTGAGCGCTTTTCCATCGGTTTTGGCAAAGCGCTCTGGCGTCGTACCGATCGGTACGGCACCGAGTATGTCATCGCCCTGATCCCGCTGGGCGGCTACGTCAAAATGCTGGATGAGCGCGCCGAACCGGTAGCGCCGGAATTGCGTCGTCACGCCTTCAATAACAAAACGGTGGGCCAGCGCGCCGCAATTATTGCCGCAGGTCCGGTTGCGAACTTCATTTTTGCTATCTTTGCTTACTGGCTGGTCTTTATCATCGGCGTCCCTGGCGTTCGTCCGGTCATTGGCGAAATAACGCCCAACTCGATTGCTGCGCAGGCGCAAATTGCGCCTGGTACGGAACTTAAAGCCGTTGATGGTATCGAAACCCCTGATTGGGATGCCGTGCGTTTACAACTGGTGTCCAAAATTGGCGATCAGCAGACGACGGTGAGCGTCGCGCCGTTTGGCAGCGACCAGCGGCAGGACAAAACGCTTGATTTACGTCACTGGGCATTTGAGCCTGATAAGCAAGATCCTGTATCTTCTTTAGGGATTCGGCCCCGCGGGCCACAGATTGAACCGGTACTGTCAGAAGTGCAGGCGAATTCCGCAGCCAGTAAAGCGGGTTTGCAAGCAGGCGACAGGATCGTTAAAGTCGATGGTCAGCCGTTAACGCAGTGGATGAAATTCGTGACGTTTGTACGTGATAATCCCGGTAAGCCGTTAGCGTTAGAGATTGAAAGGCAGGGGAGCGCCTTGTCGTTGACGTTAACGCCGGATACGAAATCGGTTAACGGAAAGGCGGAAGGGTTTGCAGGCGTGGTGCCTAAAATTATTCCTCTGCCGGAAGAGTACAAGACTATACGCCAGTATGGGCCTTTTAGCGCCATCCTCGAAGCCACGGATAAGACGTGGCAGTTGATGAAGCTGACGGTCAATATGCTGGGTAAATTGATAACCGGTGATGTGAAACTGAACAACCTCAGTGGGCCGATTTCTATCGCTCAGGGGGCTGGGATGTCAGCGGAGTTCGGGGTGATTTATTACCTGATGTTCCTTGCGCTAATCAGCGTGAACTTAGGGATAATTAACCTGTTTCCGCTGCCCGTTCTTGACGGGGGTCATCTGCTGTTCCTGGCGATTGAAAAGCTTAAGGGCGGGCCGGTATCCGAGCGGGTTCAAGACTTTAGTTATCGCATTGGCTCGATTTTGCTGGTGTTGTTAATGGGGCTTGCACTTTTCAATGATTTCTCTCGGTTGTAA", "coverage": 1.0, "is_trunc": false, "marker": "NZ_AOXE01000033.1_26", "allele": 2174459836, "is_match": true, "allele_name": 3680021500, "is_perfect": false, "has_perfect_match": false, "start_idx": 257870.0, "end_idx": 259222.0, "needs_revcomp": false, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOXE01000059.1_31": {"name": 4203409135, "seq": "ATGATTAGCGTAACGCTCAGCAAAATTGCCGATGTCCTTGGCGCCGAACACCGCGGGGCGGATCTCACGCTCGATACGGTCATTACCGACACACGGAAAGTGACGCCGGGATGCCTGTTCGTGGCGCTGAAAGGGGAACGCTTTGATGCGCATGATTTTGCTGATAAAGCAAAAGCGAACGGCGCTGGCGCCCTGCTGGTCAGTCGTCCTCTGGATATCGATCTTCCGCAGGTGATTGTAAAAGACACGCGTCAGGCATTTGGCCAACTGGCCGCCTGGGTACGTATGCAGGTACCGGCGCGGGTGGTGGCGTTAACCGGTTCGTCCGGCAAAACCTCGGTCAAAGAGATGACCGCCGCGATTCTTAGCCAGTGCGGAAATACTTTGTATACCGCAAGCAATTTTAACAACGACATCGGCGTGCCGATAACGCTGCTGCGCTTAAACCATGATTATGACTATGCGGTGATCGAGTTAGGCGCTAATCACCAGGGAGAAATCGCCTGGACCGTTAGCCTGACGCGCCCGGAAGCGGCGCTGGTCAATAACCTGGCGGCGGCGCATCTGGAAGGTTTCGGCTCGCTGGCCGGCGTGGCGAAAGCGAAAGGCGAAATCTATACCGGTTTGCCTGAGAACGGTATCGCGATTATGAATGCCGATAATAATGACTGGCTGAACTGGCAAAGCATTATTGGCGATCGTCAGGTGTGGCGCTTTTCGCCGAATGCGGCAAACAGCGACTTTACCGCTGCGAATATCCACGTGACGTCACACGGTACCGAATTTACCCTGCAAACGCCGATGGGCAGCATTGATGTGCTGCTGCCGTTGCCGGGGCGGCACAATATTGCCAACGCGCTGGCGGCCGCTGCTTTATCAATGGCGGTGGGGGCGACGCTGGCGGCGGTTAAAGCAGGGCTGGCGGCGTTAAAAGCCGTACCCGGGCGTCTGTTCCCGATTCAACTAAGTGAAAACCAACTGGTACTGGATGACGCTTATAACGCCAACGTCGGTTCGATGACCGCCGCAGTGCAGGTCCTTTCTGAAATGCCCGGCTACCGCGTGCTGGTGGTAGGCGATATGGCCGAGCTGGGCGCAGAAAGCGAAGCGTGCCACCTCCAGGTTGGCGAGGCCGCAAAAGCGGCGGGTATTGATCGCGTGTTAAGCACCGGAAAACTCAGTCAGGTTATCAGCCACGCCAGCGGCGTCGGCGAACATTTTGCCGATAAAGCCGCGCTCATTGCGCGTTTACACGCTCTGCTTCAGGAGCAACCGATGATGACTATTTTAGTGAAAGGATCACGCAGCGCCGCGATGGAAGATGTGGTTCATGCGTTACAGGAGAAAGGTTCATGTTAG", "blast_result": {"qseqid": "NZ_AOXE01000059.1_31|512799604", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 99.779, "length": 1358, "mismatch": 3, "gapopen": 0, "qstart": 2, "qend": 1359, "sstart": 146370, "send": 147727, "evalue": 0.0, "bitscore": 2492.0, "qlen": 1359, "slen": 699860, "sseq": "TGATTAGCGTAACGCTCAGCAAAATTGCCGATGTCCTTGGCGCCGAACACCGCGGGGCGGATCTCACGCTCGATACGGTCATTACCGACACACGGAAAGTGACGCCGGGATGCCTGTTCGTGGCGCTGAAAGGGGAACGCTTTGATGCGCATGATTTTGCTGATAAAGCAAAAGCGAACGGCGCTGGCGCCCTGCTGGTCAGTCGTCCTCTGGATATCGATCTTCCGCAGGTGATTGTAAAAGACACGCGTCAGGCATTTGGCCAACTGGCCGCCTGGGTACGTATGCAGGTACCGGCGCGGGTGGTGGCGTTAACCGGTTCGTCCGGCAAAACCTCGGTCAAAGAGATGACCGCCGCGATTCTTAGCCAGTGCGGAAATACTTTGTATACCGCAAGCAATTTTAACAACGACATCGGCGTGCCGATAACGCTGCTGCGCTTAAACCATGATTATGACTATGCGGTGATCGAGTTAGGCGCTAATCACCAGGGAGAAATCGCCTGGACCGTTAGCCTGACGCGCCCGGAAGCGGCGCTGGTCAATAACCTGGCGGCGGCGCATCTGGAAGGTTTCGGCTCGCTGGCCGGCGTGGCGAAAGCGAAAGGCGAAATCTATACCGGTTTGCCTGAGAACGGTATCGCGATTATGAATGCCGATAATAATGACTGGCTGAACTGGCAAAGCATTATTGGCGATCGTCAGGTGTGGCGCTTTTCGCCGAATGCGGCAAACAGCGACTTTACCGCTGCGAATATCCACGTGACGTCACACGGTACCGAATTTACCCTGCAAACGCCGATGGGCAGCATTGATGTGCTGCTGCCGTTGCCGGGGCGGCACAATATTGCCAACGCGCTGGCGGCCGCTGCTTTATCAATGGCGGTGGGGGCGACGCTGGCGGCGGTTAAAGCAGGGCTGGCGGCGTTAAAAGCCGTACCCGGGCGTCTGTTCCCGATTCAACTAAGTGAAAACCAACTGGTACTGGATGACGCTTATAACGCCAACGTCGGTTCGATGACCGCCGCAGTGCAGGTCCTTTCTGAAATGCCCGGCTACCGCGTGCTGGTGGTAGGCGATATGGCCGAGCTGGGCGCAGAAAGCGAAGCGTGCCACCTCCAGGTTGGCGAGGCCGCAAAAGCGGCGGGTATTGATCGCGTGTTAAGCACCGGAAAACTCAGTCAGGTTATCAGCCACGCCAGCGGCGTCGGCGAACATTTTGCCGATAAAGCCGCGCTCATTGCGCGTTTACACGCTCTGCTTCAGGAGCAACCGATGATGACTATTTTAGTGAAAGGATCACGCAGCGCCGCGATGGAAGATGTGGTTCATGCGTTACAGGAGAAAGGTTCATGTTAG", "coverage": 0.9992641648270787, "is_trunc": false, "marker": "NZ_AOXE01000059.1_31", "allele": 512799604, "is_match": false, "allele_name": 1208402430, "is_perfect": false, "has_perfect_match": false, "start_idx": 146368.0, "end_idx": 147726.0, "needs_revcomp": false, "trunc": false, "is_extended": true, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false, "qseq_msa": "ctgattagcgtaacgctcagcaaaattgccgatgtccttggcgccgaacaccgcggggcggatctcacgctcgatacggtcattaccgacacacggaaagtgacgccgggatgcctgttcgtggcgctgaaaggggaacgctttgatgcgcatgattttgctgataaagcaaaagcgaacggcgctggcgccctgctggtcagtcgtcctctggatatcgatcttccgcaggtgattgtaaaagacacgcgtcaggcatttggccaactggccgcctgggtacgtatgcaggtaccggcgcgggtggtggcgttaaccggttcgtccggcaaaacctcggtcaaagagatgaccgccgcgattcttagccagtgcggaaatactttgtataccgcaggcaattttaacaacgacatcggcgtgccgataacgctgctgcgcttaaaccatgattatgactatgcggtgatcgagttaggcgctaatcaccagggagaaatcgcctggaccgttagcctgacgcgcccggaagcggcgctggtcaataacctggcggcggcgcatctggaaggtttcggctcgctggccggcgtggcgaaagcgaaaggcgaaatctataccggtttgcctgagaacggtatcgcgattatgaatgccgataataatgactggctgaactggcaaagcattattggcgatcgtcaggtgtggcgcttttcgccgaatgcggcaaacagcgactttaccgctgcgaatatccacgtgacgtcacacggtaccgaatttaccctgcaaacgccgatgggcagcattgatgtgctgctgccgttgccggggcggcacaatattgccaacgcgctggcggccgctgctttatcaatggcggtgggggcgacgctggcggcggttaaagcagggctggcggcgttaaaagccgtacccgggcgtctgttcccgattcaactaagtgaaaaccaactggtactggatgacgcttataacgccaacgtcggttcgatgaccgccgcagtgcaggtcctttctgaaatgcccggctaccgcgtgctggtggtaggcgatatggccgagctgggcacagaaagcgaagcgtgccacctccaggttggcgaggccgcaaaagcggcgggtattgatcgcgtgttaagcaccggaaaactcagtcaggctatcagccacgccagcggcgtcggcgaacattttgccgataaagccgcgctcattgcgcgtttacacgctctgcttcaggagcaaccgatgatgactattttagtgaaaggatcacgcagcgccgcgatggaagatgtggttcatgcgttacaggagaaaggttcatgttag", "qseq_msa_trimmed": "ctgattagcgtaacgctcagcaaaattgccgatgtccttggcgccgaacaccgcggggcggatctcacgctcgatacggtcattaccgacacacggaaagtgacgccgggatgcctgttcgtggcgctgaaaggggaacgctttgatgcgcatgattttgctgataaagcaaaagcgaacggcgctggcgccctgctggtcagtcgtcctctggatatcgatcttccgcaggtgattgtaaaagacacgcgtcaggcatttggccaactggccgcctgggtacgtatgcaggtaccggcgcgggtggtggcgttaaccggttcgtccggcaaaacctcggtcaaagagatgaccgccgcgattcttagccagtgcggaaatactttgtataccgcaggcaattttaacaacgacatcggcgtgccgataacgctgctgcgcttaaaccatgattatgactatgcggtgatcgagttaggcgctaatcaccagggagaaatcgcctggaccgttagcctgacgcgcccggaagcggcgctggtcaataacctggcggcggcgcatctggaaggtttcggctcgctggccggcgtggcgaaagcgaaaggcgaaatctataccggtttgcctgagaacggtatcgcgattatgaatgccgataataatgactggctgaactggcaaagcattattggcgatcgtcaggtgtggcgcttttcgccgaatgcggcaaacagcgactttaccgctgcgaatatccacgtgacgtcacacggtaccgaatttaccctgcaaacgccgatgggcagcattgatgtgctgctgccgttgccggggcggcacaatattgccaacgcgctggcggccgctgctttatcaatggcggtgggggcgacgctggcggcggttaaagcagggctggcggcgttaaaagccgtacccgggcgtctgttcccgattcaactaagtgaaaaccaactggtactggatgacgcttataacgccaacgtcggttcgatgaccgccgcagtgcaggtcctttctgaaatgcccggctaccgcgtgctggtggtaggcgatatggccgagctgggcacagaaagcgaagcgtgccacctccaggttggcgaggccgcaaaagcggcgggtattgatcgcgtgttaagcaccggaaaactcagtcaggctatcagccacgccagcggcgtcggcgaacattttgccgataaagccgcgctcattgcgcgtttacacgctctgcttcaggagcaaccgatgatgactattttagtgaaaggatcacgcagcgccgcgatggaagatgtggttcatgcgttacaggagaaaggttcatgttag", "sseq_msa": "atgattagcgtaacgctcagcaaaattgccgatgtccttggcgccgaacaccgcggggcggatctcacgctcgatacggtcattaccgacacacggaaagtgacgccgggatgcctgttcgtggcgctgaaaggggaacgctttgatgcgcatgattttgctgataaagcaaaagcgaacggcgctggcgccctgctggtcagtcgtcctctggatatcgatcttccgcaggtgattgtaaaagacacgcgtcaggcatttggccaactggccgcctgggtacgtatgcaggtaccggcgcgggtggtggcgttaaccggttcgtccggcaaaacctcggtcaaagagatgaccgccgcgattcttagccagtgcggaaatactttgtataccgcaagcaattttaacaacgacatcggcgtgccgataacgctgctgcgcttaaaccatgattatgactatgcggtgatcgagttaggcgctaatcaccagggagaaatcgcctggaccgttagcctgacgcgcccggaagcggcgctggtcaataacctggcggcggcgcatctggaaggtttcggctcgctggccggcgtggcgaaagcgaaaggcgaaatctataccggtttgcctgagaacggtatcgcgattatgaatgccgataataatgactggctgaactggcaaagcattattggcgatcgtcaggtgtggcgcttttcgccgaatgcggcaaacagcgactttaccgctgcgaatatccacgtgacgtcacacggtaccgaatttaccctgcaaacgccgatgggcagcattgatgtgctgctgccgttgccggggcggcacaatattgccaacgcgctggcggccgctgctttatcaatggcggtgggggcgacgctggcggcggttaaagcagggctggcggcgttaaaagccgtacccgggcgtctgttcccgattcaactaagtgaaaaccaactggtactggatgacgcttataacgccaacgtcggttcgatgaccgccgcagtgcaggtcctttctgaaatgcccggctaccgcgtgctggtggtaggcgatatggccgagctgggcgcagaaagcgaagcgtgccacctccaggttggcgaggccgcaaaagcggcgggtattgatcgcgtgttaagcaccggaaaactcagtcaggttatcagccacgccagcggcgtcggcgaacattttgccgataaagccgcgctcattgcgcgtttacacgctctgcttcaggagcaaccgatgatgactattttagtgaaaggatcacgcagcgccgcgatggaagatgtggttcatgcgttacaggagaaaggttcatgttag", "sseq_msa_trimmed": "atgattagcgtaacgctcagcaaaattgccgatgtccttggcgccgaacaccgcggggcggatctcacgctcgatacggtcattaccgacacacggaaagtgacgccgggatgcctgttcgtggcgctgaaaggggaacgctttgatgcgcatgattttgctgataaagcaaaagcgaacggcgctggcgccctgctggtcagtcgtcctctggatatcgatcttccgcaggtgattgtaaaagacacgcgtcaggcatttggccaactggccgcctgggtacgtatgcaggtaccggcgcgggtggtggcgttaaccggttcgtccggcaaaacctcggtcaaagagatgaccgccgcgattcttagccagtgcggaaatactttgtataccgcaagcaattttaacaacgacatcggcgtgccgataacgctgctgcgcttaaaccatgattatgactatgcggtgatcgagttaggcgctaatcaccagggagaaatcgcctggaccgttagcctgacgcgcccggaagcggcgctggtcaataacctggcggcggcgcatctggaaggtttcggctcgctggccggcgtggcgaaagcgaaaggcgaaatctataccggtttgcctgagaacggtatcgcgattatgaatgccgataataatgactggctgaactggcaaagcattattggcgatcgtcaggtgtggcgcttttcgccgaatgcggcaaacagcgactttaccgctgcgaatatccacgtgacgtcacacggtaccgaatttaccctgcaaacgccgatgggcagcattgatgtgctgctgccgttgccggggcggcacaatattgccaacgcgctggcggccgctgctttatcaatggcggtgggggcgacgctggcggcggttaaagcagggctggcggcgttaaaagccgtacccgggcgtctgttcccgattcaactaagtgaaaaccaactggtactggatgacgcttataacgccaacgtcggttcgatgaccgccgcagtgcaggtcctttctgaaatgcccggctaccgcgtgctggtggtaggcgatatggccgagctgggcgcagaaagcgaagcgtgccacctccaggttggcgaggccgcaaaagcggcgggtattgatcgcgtgttaagcaccggaaaactcagtcaggttatcagccacgccagcggcgtcggcgaacattttgccgataaagccgcgctcattgcgcgtttacacgctctgcttcaggagcaaccgatgatgactattttagtgaaaggatcacgcagcgccgcgatggaagatgtggttcatgcgttacaggagaaaggttcatgttag"}}, "NZ_AOXE01000059.1_11": {"name": 1154766063, "seq": "ATGAGCGTTAAACAGCTCTGGCGCTGGCAAGGCGTTAACGATAAAGGTCAACTGGAACAAGACGTTGTATGGGTGGACAATCGTCTGGCGCTGATCATCACCCTGCAACATCAGCGCATTATGCCGCTTCGCATCAAGCGCATAAGCGTTAACGCCGCACTGTGGAAAGAAGAGCAAAGCGCTGAAATTATTCATCAGTTGGCCACGCTCATTCATGCCGGACTGACGCTTTCTGAAGGGCTGGAACTCCTTGCGAAACAGCATCCCCACCGACAATGGCAAGCGCTGTTGCGCACGCTGGCTCACGAGCTTGAACAGGGCGTCCCTTTTTCCAGCGCATTAGTCTCCTGGCCGCAGGTATTTCCGCCGCTCTACCAGACGATGATCCGCACCGGAGAACTGACCGGCAAACTGGCCGAATGCTGCTTTGAACTGGCCCGTCAGCAAAAAGCGCAACGGCAGATTACGGTTAGCGTGAAAAAGGCGCTGCGCTATCCCGCCATTATTCTAACAATGGCCGCCCTGGTCGTTTTCGCCATGCTGCACTTTGTCCTGCCGGAATTTGCCGCCATTTACCGTAGCTTCAATACCCCGCTTCCTCTTCTGACACGCGGTATTATCGCGATAGCGCAATGGGGGCCGGCATGGGGTTGGCTCATCTTGTTCCTGACGATGCTCGTTGCTATCGCTCACCGCAGGTTAAAACAAAAACCGTCCTGGCAAGCGCAGCGGCAGCGTCTTCTGCTACGGCTTCCCGTTATGGGTCGCCTGATAAGAGGCCAGAAACTAGCGCAAATATTCACCGTACTGGCATTAACCCAAAGCGCAGGCATTCCTTTTCTTCAGGGACTGGAAAGCGCTATCGATAGTCTCGGCTGCCCTTACTGGTCACAGCGTTTAACGCAGGTACATCAGGAGATCGCCGCGGGCAATCCGGTCTGGTTGGCGCTAAAAAATACCCAGGAATTTAGTCCGCTATGCCTGCAACTGGTCAGAACGGGCGAAGCGTCCGGTTCACTCGATATCATGCTGCATAACCTTGCCCGTCACCACAGTGAATCTACGCTGGCGCTGGCCGATAATCTGGCGTCGCTGTTGGAACCGGCGTTATTGATCATCACCGGCTTAATTATCGGTACGCTGGTGGTGGCGATGTATTTGCCGATTTTTCATTTGGGAGACGCGATGAGCGGGATGGGATAA", "blast_result": {"qseqid": "NZ_AOXE01000059.1_11|2962512377", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 99.917, "length": 1204, "mismatch": 0, "gapopen": 1, "qstart": 1, "qend": 1204, "sstart": 169467, "send": 168265, "evalue": 0.0, "bitscore": 2217.0, "qlen": 1204, "slen": 699860, "sseq": "ATGAGCGTTAAACAGCTCTGGCGCTGGCAAGGCGTTAACGATAAAGGTCAACTGGAACAAGACGTTGTATGGGTGGACAATCGTCTGGCGCTGATCATCACCCTGCAACATCAGCGCATTATGCCGCTTCGCATCAAGCGCATAAGCGTTAACGCCGCACTGTGGAAAGAAGAGCAAAGCGCTGAAATTATTCATCAGTTGGCCACGCTCATTCATGCCGGACTGACGCTTTCTGAAGGGCTGGAACTCCTTGCGAAACAGCATCCCCACCGACAATGGCAAGCGCTGTTGCGCACGCTGGCTCACGAGCTTGAACAGGGCGTCCCTTTTTCCAGCGCATTAGTCTCCTGGCCGCAGGTATTTCCGCCGCTCTACCAGACGATGATCCGCACCGGAGAACTGACCGGCAAACTGGCCGAATGCTGCTTTGAACTGGCCCGTCAGCAAAAAGCGCAACGGCAGATTACGGTTAGCGTGAAAAAGGCGCTGCGCTATCCCGCCATTATTCTAACAATGGCCGCCCTGGTCGTTTTCGCCATGCTGCACTTTGTCCTGCCGGAATTTGCCGCCATTTACCGTAGCTTCAATACCCCGCTTCCTCTTCTGACACGCGGTATTATCGCGATAGCGCAATGGGGGCCGGCATGGGG-TTGGCTCATCTTGTTCCTGACGATGCTCGTTGCTATCGCTCACCGCAGGTTAAAACAAAAACCGTCCTGGCAAGCGCAGCGGCAGCGTCTTCTGCTACGGCTTCCCGTTATGGGTCGCCTGATAAGAGGCCAGAAACTAGCGCAAATATTCACCGTACTGGCATTAACCCAAAGCGCAGGCATTCCTTTTCTTCAGGGACTGGAAAGCGCTATCGATAGTCTCGGCTGCCCTTACTGGTCACAGCGTTTAACGCAGGTACATCAGGAGATCGCCGCGGGCAATCCGGTCTGGTTGGCGCTAAAAAATACCCAGGAATTTAGTCCGCTATGCCTGCAACTGGTCAGAACGGGCGAAGCGTCCGGTTCACTCGATATCATGCTGCATAACCTTGCCCGTCACCACAGTGAATCTACGCTGGCGCTGGCCGATAATCTGGCGTCGCTGTTGGAACCGGCGTTATTGATCATCACCGGCTTAATTATCGGTACGCTGGTGGTGGCGATGTATTTGCCGATTTTTCATTTGGGAGACGCGATGAGCGGGATGGGATAA", "coverage": 1.0, "is_trunc": false, "marker": "NZ_AOXE01000059.1_11", "allele": 2962512377, "is_match": true, "allele_name": 1154766063, "is_perfect": false, "has_perfect_match": false, "start_idx": 168264.0, "end_idx": 169466.0, "needs_revcomp": true, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOXE01000059.1_79": {"name": 1341416065, "seq": "ATGGATTTCAACTTAAATGACGAACAGGAGCTGTTTGTCGCCGGTATTCGCGAACTGATGGCCAGTGAGAACTGGGAAGCTTATTTTGCCGAGTGCGATCGTGACAGCGTCTACCCTGAGCGTTTTGTAAAAGCGCTGGCGGATATGGGTATTGATAGCCTGCTGATCCCGGAAGAACACGGCGGTCTGGAAGCGGGTTTTGTTACCGTCGCCGCCGTCTGGATGGAACTGGGACGTCTTGGCGCGCCAACTTACGTGTTGTACCAATTGCCGGGAGGTTTTAACACTTTCCTGCGTGAAGGGACTCAGGAGCAAATTGATAAAATCATGGCGTTCCGGGGCACCGGTAAGCAGATGTGGAACTCTGCTATCACCGAACCGGGAGCGGGATCGGATGTTGGTAGTCTGAAAACCACTTATACACGCAAAAATGGTAAGGTTTATCTCAATGGCAGTAAGTGCTTTATCACCAGTAGCGCCTATACCCCGTACATCGTGGTCATGGCGAGAGACGGTGCATCGCCGGATAAACCGGTTTACACCGAGTGGTTTGTGGACATGAGCAAAGCGGGTATCAAGGTCAACAAACTGGAGAAACTCGGTCTGCGCATGGATAGCTGCTGTGAAATCACCTTTGACGACGTTGAACTGGACGAGAAAGACATGTTCGGTCGGGAAGGTAACGGCTTCAACCGCGTGAAAGAAGAGTTTGACCATGAACGCTTCCTCGTCGCGCTGACCAACTACGGTACCGCAATGTGCACTTTTGAAGACGCTGCGCGTTACGCTAATCAGCGCGTGCAGTTTGGTGAAGCTATTGGCCGTTTCCAGCTGATTCAGGAGAAGTTTGCGCATATGGCGATCAAACTGAACTCCATGAAAAATATGCTGCTGGAAGCCGCGTGGAAAGCAGATAACGGCACTATTACCTCCGGCGACGCGGCCATGTGCAAATACTTCTGCGCCAACGCCGCGTTTGAAGTGGTAGACACCGCCATGCAGGTACTGGGAGGTGTTGGTATCGCGGGCAACCACCGCATCACGCGTTTCTGGCGTGACCTGCGCGTTGACCGTGTTTCTGGTGGTTCTGACGAAATGCAGATCCTGACGTTGGGTCGTGCGGTACTCAAGCAATACCGCTAA", "blast_result": {"qseqid": "NZ_AOXE01000059.1_79|2405867870", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 99.3, "length": 1143, "mismatch": 8, "gapopen": 0, "qstart": 1, "qend": 1143, "sstart": 86459, "send": 85317, "evalue": 0.0, "bitscore": 2067.0, "qlen": 1143, "slen": 699860, "sseq": "ATGGATTTCAACTTAAATGACGAACAGGAGCTGTTTGTCGCCGGTATTCGCGAACTGATGGCCAGTGAGAACTGGGAAGCTTATTTTGCCGAGTGCGATCGTGACAGCGTCTACCCTGAGCGTTTTGTAAAAGCGCTGGCGGATATGGGTATTGATAGCCTGCTGATCCCGGAAGAACACGGCGGTCTGGAAGCGGGTTTTGTTACCGTCGCCGCCGTCTGGATGGAACTGGGACGTCTTGGCGCGCCAACTTACGTGTTGTACCAATTGCCGGGAGGTTTTAACACTTTCCTGCGTGAAGGGACTCAGGAGCAAATTGATAAAATCATGGCGTTCCGGGGCACCGGTAAGCAGATGTGGAACTCTGCTATCACCGAACCGGGAGCGGGATCGGATGTTGGTAGTCTGAAAACCACTTATACACGCAAAAATGGTAAGGTTTATCTCAATGGCAGTAAGTGCTTTATCACCAGTAGCGCCTATACCCCGTACATCGTGGTCATGGCGAGAGACGGTGCATCGCCGGATAAACCGGTTTACACCGAGTGGTTTGTGGACATGAGCAAAGCGGGTATCAAGGTCAACAAACTGGAGAAACTCGGTCTGCGCATGGATAGCTGCTGTGAAATCACCTTTGACGACGTTGAACTGGACGAGAAAGACATGTTCGGTCGGGAAGGTAACGGCTTCAACCGCGTGAAAGAAGAGTTTGACCATGAACGCTTCCTCGTCGCGCTGACCAACTACGGTACCGCAATGTGCACTTTTGAAGACGCTGCGCGTTACGCTAATCAGCGCGTGCAGTTTGGTGAAGCTATTGGCCGTTTCCAGCTGATTCAGGAGAAGTTTGCGCATATGGCGATCAAACTGAACTCCATGAAAAATATGCTGCTGGAAGCCGCGTGGAAAGCAGATAACGGCACTATTACCTCCGGCGACGCGGCCATGTGCAAATACTTCTGCGCCAACGCCGCGTTTGAAGTGGTAGACACCGCCATGCAGGTACTGGGAGGTGTTGGTATCGCGGGCAACCACCGCATCACGCGTTTCTGGCGTGACCTGCGCGTTGACCGTGTTTCTGGTGGTTCTGACGAAATGCAGATCCTGACGTTGGGTCGTGCGGTACTCAAGCAATACCGCTAA", "coverage": 1.0, "is_trunc": false, "marker": "NZ_AOXE01000059.1_79", "allele": 2405867870, "is_match": true, "allele_name": 1341416065, "is_perfect": false, "has_perfect_match": false, "start_idx": 85316.0, "end_idx": 86458.0, "needs_revcomp": true, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOXE01000052.1_78": {"name": 2197498164, "seq": "ATGCATAACCAGGCTCCGATTCAACGTAGAAAATCGACACGTATTTACGTTGGGAATGTGCCGATTGGCGATGGCGCCCCTATCGCCGTCCAGTCGATGACTAACACGCGTACCACTGACGTGGAAGCGACGGTTAATCAGATCAAAGCGCTGGAGCGCGTTGGCGCAGATATTGTTCGTGTTTCTGTACCGACCATGGACGCCGCCGAAGCGTTCAAGCTTATCAAACAGCAGGTTAGCGTCCCGCTGGTTGCCGATATTCACTTCGACTACCGCATTGCGCTGAAAGTAGCGGAATACGGCGTTGACTGCTTGCGTATTAACCCCGGCAATATCGGTAACGAAGAACGCATTCGCATGGTGGTGGACTGCGCGCGCGACAAAAACATCCCTATCCGTATCGGCGTAAATGCCGGATCGCTGGAAAAAGATCTGCAGGAAAAATACGGAGAGCCGACGCCGCAGGCGCTGCTGGAATCAGCCATGCGCCATGTCGATCATCTCGATCGTCTCAACTTTGATCAGTTCAAAGTGAGCGTAAAAGCGTCCGATGTATTCCTTGCCGTTGAGTCTTATCGTTTGTTGGCTAAACAGATCGATCAGCCGCTGCATCTGGGGATCACCGAAGCGGGCGGCGCGCGTAGCGGGGCGGTTAAGTCGGCGATCGGTTTAGGTCTGCTGTTATCGGAAGGCATCGGCGACACGCTGCGCGTATCGTTGGCGGCCGACCCGGTGGAAGAGATCAAAGTCGGTTTCGATATCCTGAAGTCGCTGCGTATTCGCGCGCGCGGCATCAATTTCATCGCCTGCCCGACCTGTTCTCGTCAGGAGTTCGACGTTATCGGCACGGTGAACGCGCTGGAGCAGCGTCTGGAAGATATCATCACCCCGATGGACGTCTCGATCATCGGTTGTGTGGTGAACGGGCCGGGCGAAGCGCTGGTATCGACGCTGGGCGTGACGGGCGGCAATAAGAAAAGCGGCCTGTATGAAGACGGCGTGCGTAAGGACAGACTCGATAACGACGATATGATCGCGCAGCTTGAATCCCGTATTCGCGCGAAAGTAAGTCAACTTGATGAAGCGCGTCGGATTGACGTGCTGCAGGTTGAAAAATAA", "blast_result": {"qseqid": "NZ_AOXE01000052.1_78|67862347", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 98.57, "length": 1119, "mismatch": 15, "gapopen": 1, "qstart": 1, "qend": 1118, "sstart": 383225, "send": 384343, "evalue": 0.0, "bitscore": 1977.0, "qlen": 1118, "slen": 699860, "sseq": "ATGCATAACCAGGCTCCGATTCAACGTAGAAAATCGACACGTATTTACGTTGGGAATGTGCCGATTGGCGATGGCGCCCCTATCGCCGTCCAGTCGATGACTAACACGCGTACCACTGACGTGGAAGCGACGGTTAATCAGATCAAAGCGCTGGAGCGCGTTGGCGCAGATATTGTTCGTGTTTCTGTACCGACCATGGACGCCGCCGAAGCGTTCAAGCTTATCAAACAGCAGGTTAGCGTCCCGCTGGTTGCCGATATTCACTTCGACTACCGCATTGCGCTGAAAGTAGCGGAATACGGCGTTGACTGCTTGCGTATTAACCCCGGCAATATCGGTAACGAAGAACGCATTCGCATGGTGGTGGACTGCGCGCGCGACAAAAACATCCCTATCCGTATCGGCGTAAATGCCGGATCGCTGGAAAAAGATCTGCAGGAAAAATACGGAGAGCCGACGCCGCAGGCGCTGCTGGAATCAGCCATGCGCCATGTCGATCATCTCGATCGTCTCAACTTTGATCAGTTCAAAGTGAGCGTAAAAGCGTCCGATGTATTCCTTGCCGTTGAGTCTTATCGTTTGTTGGCTAAACAGATCGATCAGCCGCTGCATCTGGGGATCACCGAAGCGGGCGGCGCGCGTAGCGGGGCGGTTAAGTCGGCGATCGGTTTAGGTCTGCTGTTATCGGAAGGCATCGGCGACACGCTGCGCGTATCGTTGGCGGCCGACCCGGTGGAAGAGATCAAAGTCGGTTTCGATATCCTGAAGTCGCTGCGTATTCGCGCGCGCGGCATCAATTTCATCGCCTGCCCGACCTGTTCTCGTCAGGAGTTCGACGTTATCGGCACGGTGAACGCGCTGGAGCAGCGTCTGGAAGATATCATCACCCCGATGGACGTCTCGATCATCGGTTGTGTGGTGAACGGGCCGGGCGAAGCGCTGGTATCGACGCTGGGCGTGACGGGCGGCAATAAGAAAAGCGGCCTGTATGAAGACGGCGTGCGTAAGGACAGACTCGATAACGACGATATGATCGCGCAGCTTGAATCCCGTATTCGCGCGAAAGTAAGTCAACTTGATGAAGCGCGTCGGATTGACGTGCTGCAGGTTGAAAAATAA", "coverage": 1.0008944543828264, "is_trunc": false, "marker": "NZ_AOXE01000052.1_78", "allele": 67862347, "is_match": true, "allele_name": 2197498164, "is_perfect": false, "has_perfect_match": false, "start_idx": 383224.0, "end_idx": 384342.0, "needs_revcomp": false, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOXE01000059.1_38": {"name": 4065472468, "seq": "GTGAAACTGGATGAAATCGCTCGGCTGGCCGGTGTCTCGCGCACAACTGCAAGCTACGTTATAAACGGTAAAGCAAAGCAATACCGCGTGAGCGACAAAACCGTAGAAAAAGTCATGGCGGTAGTGCGTGAGCACAATTACCATCCTAACGCTGTGGCTGCCGGGCTGCGTGCTGGACGCACACGTTCCATTGGTCTGGTGATCCCGGACCTTGAAAACACGAGCTACACCCGTATCGCAAACTATCTTGAGCGCCAGGCACGCCAGCGTGGCTACCAACTGCTGATCGCCTGTTCTGAAGATCAGCCGGATAACGAAATGCGCTGCATTGAGCACCTTTTGCAACGCCAGGTGGATGCAATCATTGTTTCAACTTCGTTACCGCCGGAGCATCCCTTCTATCAGCGCTGGGCCAACGATCCGTTCCCCATCGTCGCGCTCGACCGCGCGCTGGATCGCGAACATTTCACCAGCGTGGTCGGCGCCGATCAGGATGATGCCGAGATGTTGGCGGAAGAGCTGCGTAAATTCCCGGCGGAAACGGTGCTTTATTTGGGCGCGCTGCCGGAGTTGTCCGTCAGTTTCCTGCGCGAGCAGGGGTTCCGCACCGCATGGAAAGACGATCCGCGGGAGGTGAATTTCTTATATGCCAACAGCTATGAGCGCGAAGCCGCCGCGCAGCTGTTTGAGAAATGGCTGGAAACGCATCCTATGCCGCAGGCGCTCTTTACGACATCATTCGCGCTATTACAGGGCGTGATGGACGTTACGCTGCGGCGCGATGGAAAACTGCCTTCGGATTTAGCGATTGCGACCTTTGGCGATCATGAGCTGCTGGATTTTCTGCAATGCCCGGTACTGGCGGTGGCGCAGCGTCATCGTGATGTCGCGGAACGCGTGCTGGAGATTGTGCTGGCAAGTCTTGATGAACCGCGTAAACCGAAACCCGGCTTAACGCGTATTCGGCGAAACCTGTATCGTCGCGGCATTCTGAGCCGTAGCTAA", "blast_result": {"qseqid": "NZ_AOXE01000059.1_38|1215119632", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 99.90100000000001, "length": 1006, "mismatch": 0, "gapopen": 1, "qstart": 1, "qend": 1006, "sstart": 139743, "send": 140747, "evalue": 0.0, "bitscore": 1851.0, "qlen": 1006, "slen": 699860, "sseq": "GTGAAACTGGATGAAATCGCTCGGCTGGCCGGTGTCTCGCGCACAACTGCAAGCTACGTTATAAACGGTAAAGCAAAGCAATACCGCGTGAGCGACAAAACCGTAGAAAAAGT-CATGGCGGTAGTGCGTGAGCACAATTACCATCCTAACGCTGTGGCTGCCGGGCTGCGTGCTGGACGCACACGTTCCATTGGTCTGGTGATCCCGGACCTTGAAAACACGAGCTACACCCGTATCGCAAACTATCTTGAGCGCCAGGCACGCCAGCGTGGCTACCAACTGCTGATCGCCTGTTCTGAAGATCAGCCGGATAACGAAATGCGCTGCATTGAGCACCTTTTGCAACGCCAGGTGGATGCAATCATTGTTTCAACTTCGTTACCGCCGGAGCATCCCTTCTATCAGCGCTGGGCCAACGATCCGTTCCCCATCGTCGCGCTCGACCGCGCGCTGGATCGCGAACATTTCACCAGCGTGGTCGGCGCCGATCAGGATGATGCCGAGATGTTGGCGGAAGAGCTGCGTAAATTCCCGGCGGAAACGGTGCTTTATTTGGGCGCGCTGCCGGAGTTGTCCGTCAGTTTCCTGCGCGAGCAGGGGTTCCGCACCGCATGGAAAGACGATCCGCGGGAGGTGAATTTCTTATATGCCAACAGCTATGAGCGCGAAGCCGCCGCGCAGCTGTTTGAGAAATGGCTGGAAACGCATCCTATGCCGCAGGCGCTCTTTACGACATCATTCGCGCTATTACAGGGCGTGATGGACGTTACGCTGCGGCGCGATGGAAAACTGCCTTCGGATTTAGCGATTGCGACCTTTGGCGATCATGAGCTGCTGGATTTTCTGCAATGCCCGGTACTGGCGGTGGCGCAGCGTCATCGTGATGTCGCGGAACGCGTGCTGGAGATTGTGCTGGCAAGTCTTGATGAACCGCGTAAACCGAAACCCGGCTTAACGCGTATTCGGCGAAACCTGTATCGTCGCGGCATTCTGAGCCGTAGCTAA", "coverage": 1.0, "is_trunc": false, "marker": "NZ_AOXE01000059.1_38", "allele": 1215119632, "is_match": true, "allele_name": 4065472468, "is_perfect": false, "has_perfect_match": false, "start_idx": 139742.0, "end_idx": 140746.0, "needs_revcomp": false, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOXE01000033.1_2": {"name": 2161147266, "seq": "ATGATTAAACTTTCGAATATTACCAAAGTGTTCCAGCAGGGGGCGCGCACCATTCAGGCGCTGAACAATGTCAGCCTGCATGTCCCTGCCGGACAAATTTACGGCGTCATCGGCGCCTCCGGCGCCGGTAAAAGTACGCTCATTCGCTGCGTAAACTTACTTGAACGTCCTACTGAAGGAAGCGTAATGGTAGGCGGTCAGGAGCTGACAACGCTTTCAGAGTCCGGGTTGACCAAAGCTCGCCGTCAAATCGGCATGATTTTCCAACATTTTAACCTGCTCTCTTCCCGTACCGTGTTTGGCAACGTCGCGTTGCCGCTGGAACTGGATAACACACCAAAGGAAGAGATCAAACGCCGTGTCACAGAGCTGCTGGATTTAGTCGGTCTTGGCGACAAGCACGACAGCTATCCGGCAAATCTTTCCGGCGGTCAGAAACAGCGTGTCGCGATTGCCCGCGCGTTAGCCAGTAATCCAAAAGTGTTGCTGTGCGATGAAGCCACCAGCGCGCTTGATCCCGCGACGACCCGTTCGATTCTGGAATTGCTGAAAGATATCAACCGTCGTCTGGGGTTGACGATTCTGCTTATCACTCATGAAATGGATGTCGTAAAACGTATCTGCGACTGCGTTGCCGTCATCAGTAATGGCGAGCTTATTGAGCAGGATACGGTCAGCGAAGTCTTCTCGCATCCTAAAACGCCGCTGGCGCAGAAGTTTATTCAGTCCACTCTGCATCTGGACATTCCGGAAGATTACCAGGCGCGTTTGAAAGCGTCGCCGGAAACTGACAGCGTGCCGATGCTGCGCATGGAGTTCACCGGACAGTCTGTGGATGCCCCGCTGCTTTCTGAAACCGCGCGTCGTTTCAACGTGAACAATAATATTATCAGCGCACAGATGGATTACGCGGGCGGTGTGAAGTTCGGCATTATGCTAACGGAAATGCACGGCACACAAGAAGAGACGCAAGCCGCAATTGCCTGGCTGCAGGATCACCATGTGAAAGTAGAGGTACTGGGTTATGTCTGA", "blast_result": {"qseqid": "NZ_AOXE01000033.1_2|2613594907", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 98.64299999999999, "length": 1032, "mismatch": 14, "gapopen": 0, "qstart": 1, "qend": 1032, "sstart": 286343, "send": 285312, "evalue": 0.0, "bitscore": 1829.0, "qlen": 1032, "slen": 699860, "sseq": "ATGATTAAACTTTCGAATATTACCAAAGTGTTCCAGCAGGGGGCGCGCACCATTCAGGCGCTGAACAATGTCAGCCTGCATGTCCCTGCCGGACAAATTTACGGCGTCATCGGCGCCTCCGGCGCCGGTAAAAGTACGCTCATTCGCTGCGTAAACTTACTTGAACGTCCTACTGAAGGAAGCGTAATGGTAGGCGGTCAGGAGCTGACAACGCTTTCAGAGTCCGGGTTGACCAAAGCTCGCCGTCAAATCGGCATGATTTTCCAACATTTTAACCTGCTCTCTTCCCGTACCGTGTTTGGCAACGTCGCGTTGCCGCTGGAACTGGATAACACACCAAAGGAAGAGATCAAACGCCGTGTCACAGAGCTGCTGGATTTAGTCGGTCTTGGCGACAAGCACGACAGCTATCCGGCAAATCTTTCCGGCGGTCAGAAACAGCGTGTCGCGATTGCCCGCGCGTTAGCCAGTAATCCAAAAGTGTTGCTGTGCGATGAAGCCACCAGCGCGCTTGATCCCGCGACGACCCGTTCGATTCTGGAATTGCTGAAAGATATCAACCGTCGTCTGGGGTTGACGATTCTGCTTATCACTCATGAAATGGATGTCGTAAAACGTATCTGCGACTGCGTTGCCGTCATCAGTAATGGCGAGCTTATTGAGCAGGATACGGTCAGCGAAGTCTTCTCGCATCCTAAAACGCCGCTGGCGCAGAAGTTTATTCAGTCCACTCTGCATCTGGACATTCCGGAAGATTACCAGGCGCGTTTGAAAGCGTCGCCGGAAACTGACAGCGTGCCGATGCTGCGCATGGAGTTCACCGGACAGTCTGTGGATGCCCCGCTGCTTTCTGAAACCGCGCGTCGTTTCAACGTGAACAATAATATTATCAGCGCACAGATGGATTACGCGGGCGGTGTGAAGTTCGGCATTATGCTAACGGAAATGCACGGCACACAAGAAGAGACGCAAGCCGCAATTGCCTGGCTGCAGGATCACCATGTGAAAGTAGAGGTACTGGGTTATGTCTGA", "coverage": 1.0, "is_trunc": false, "marker": "NZ_AOXE01000033.1_2", "allele": 2613594907, "is_match": true, "allele_name": 2161147266, "is_perfect": false, "has_perfect_match": false, "start_idx": 285311.0, "end_idx": 286342.0, "needs_revcomp": true, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOXE01000059.1_49": {"name": 3076491138, "seq": "GTGTTAAAAAAATATCTTCCGCTTTTACTCCTGTGCGCGGCGCCTGCTTTCGCCAAACCCGTTCTCACCGTCTATACCTACGACTCGTTCGCCGCCGACTGGGGGCCAGGCCCGGCGGTGAAAAAAGCGTTTGAAGCCGATTGCAACTGCGAGCTGAAACTGGTGGCGCTGGAGGATGGCGTTTCGCTGCTCAACCGCCTGCGGATGGAGGGGAAGAACAGCAAAGCCGATGTGGTGTTGGGGCTGGACAATAATCTGCTGGAGGCGGCCACGCAAACTAAACTCTTTGCCAAAAGCGGCGTGGCGAATGAGGCGGTCAAGGTGCCCGGCGGCTGGAAAAACGACACATTTGTGCCGTTCGATTACGGCTATTTCGCCTTTGTCTACGATAAAAGCAAGCTGAAAAATCCGCCGAAAAGCCTGAAAGAACTGGTCGAGAGCGATCAAAAATGGCGGGTGATTTATCAGGATCCGCGTACCAGTACGCCAGGGCTGGGGCTGTTACTGTGGATGCGCAAAGTTTATGGCGATAACGCGCCGCAGGCCTGGCAAAAACTGGCGGCCAAAACGGTGACGGTGACGAAAGGCTGGAGCGAGGCCTACGGTTTATTTCTGAAAGGTGAAAGCGATTTGGTGCTCAGTTACACCACCTCTCCGGCGTATCACATTATTGAAGAGAAGAAGGACAATTACGCCGCCGCGAACTTCAGCGAAGGCCATTACTTACAGGTAGAAGTCGCGGCGCGTACCGTCGCCAGTAAGCAGCCGGAACTGGCGGAGAAATTCCTCAAATTTATGGTTTCTCCGGCGTTTCAGAACGCCATACCCACCGGCAACTGGATGTACCCGGTAGCGGACGTCGCCTTACCCGCAGGGTTTGAATCATTGGCCAAACCCGCCACAACGCTGGAATTCACGCCGCAACAAGTGGCAGCACAACGCCAGGCATGGATTAGCGAATGGCAACGCGCCGTCAGCCGTTAA", "blast_result": {"qseqid": "NZ_AOXE01000059.1_49|3076491138", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 100.0, "length": 984, "mismatch": 0, "gapopen": 0, "qstart": 1, "qend": 984, "sstart": 128076, "send": 127093, "evalue": 0.0, "bitscore": 1818.0, "qlen": 984, "slen": 699860, "sseq": "GTGTTAAAAAAATATCTTCCGCTTTTACTCCTGTGCGCGGCGCCTGCTTTCGCCAAACCCGTTCTCACCGTCTATACCTACGACTCGTTCGCCGCCGACTGGGGGCCAGGCCCGGCGGTGAAAAAAGCGTTTGAAGCCGATTGCAACTGCGAGCTGAAACTGGTGGCGCTGGAGGATGGCGTTTCGCTGCTCAACCGCCTGCGGATGGAGGGGAAGAACAGCAAAGCCGATGTGGTGTTGGGGCTGGACAATAATCTGCTGGAGGCGGCCACGCAAACTAAACTCTTTGCCAAAAGCGGCGTGGCGAATGAGGCGGTCAAGGTGCCCGGCGGCTGGAAAAACGACACATTTGTGCCGTTCGATTACGGCTATTTCGCCTTTGTCTACGATAAAAGCAAGCTGAAAAATCCGCCGAAAAGCCTGAAAGAACTGGTCGAGAGCGATCAAAAATGGCGGGTGATTTATCAGGATCCGCGTACCAGTACGCCAGGGCTGGGGCTGTTACTGTGGATGCGCAAAGTTTATGGCGATAACGCGCCGCAGGCCTGGCAAAAACTGGCGGCCAAAACGGTGACGGTGACGAAAGGCTGGAGCGAGGCCTACGGTTTATTTCTGAAAGGTGAAAGCGATTTGGTGCTCAGTTACACCACCTCTCCGGCGTATCACATTATTGAAGAGAAGAAGGACAATTACGCCGCCGCGAACTTCAGCGAAGGCCATTACTTACAGGTAGAAGTCGCGGCGCGTACCGTCGCCAGTAAGCAGCCGGAACTGGCGGAGAAATTCCTCAAATTTATGGTTTCTCCGGCGTTTCAGAACGCCATACCCACCGGCAACTGGATGTACCCGGTAGCGGACGTCGCCTTACCCGCAGGGTTTGAATCATTGGCCAAACCCGCCACAACGCTGGAATTCACGCCGCAACAAGTGGCAGCACAACGCCAGGCATGGATTAGCGAATGGCAACGCGCCGTCAGCCGTTAA", "coverage": 1.0, "is_trunc": false, "marker": "NZ_AOXE01000059.1_49", "allele": 3076491138, "is_match": true, "allele_name": 3076491138, "is_perfect": true, "has_perfect_match": true, "start_idx": 127092.0, "end_idx": 128075.0, "needs_revcomp": true, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOXE01000033.1_17": {"name": 3779563470, "seq": "ATGAGTCTGAATTTCCTTGATTTTGAACAGCCGATAGCAGAGCTGGAAGCGAAAATCGATTCTCTGACTGCGGTAAGCCGCCAGGATGAGAAACTGGATATTAATATCGATGAAGAAGTCCATCGCCTGCGCGAAAAAAGCGTAGAACTGACGCGCAAAATCTTCGCCGATCTCGGCGCATGGCAGGTAGCCCAACTGGCGCGCCATCCGCAGCGTCCGTACACCTTGGATTATGTCCGTCTGGCGTTTGATGAGTTTGATGAGCTGGCGGGCGATCGCGCCTATGCTGATGACAAAGCCATCGTCGGCGGTATCGCGCGTCTGGAAGGGCGACCGGTGATGATCATTGGTCATCAGAAAGGTCGTGAAACCAAAGAAAAAATTCGTCGTAACTTTGGCATGCCAGCGCCGGAAGGCTACCGCAAAGCGCTGCGCCTGATGGAAATGGCTGAACGCTTCAACATGCCGATTATCACCTTCATCGACACCCCGGGCGCTTACCCTGGCGTGGGCGCGGAAGAGCGTGGTCAGTCTGAAGCTATCGCCCGCAACCTGCGTGAGATGTCTCGTCTGAACGTACCGGTCATCTGCACCGTGATTGGCGAAGGCGGCTCCGGCGGCGCATTGGCGATTGGCGTGGGTGATAAAGTGAATATGCTGCAATACAGCACCTATTCCGTTATCTCCCCGGAAGGTTGCGCCTCTATTTTGTGGAAGAGCGCCGACAAAGCGCCATTGGCTGCTGAAGCGATGGGCATCATCGCGCCGCGTCTGAAAGAGCTGAAGCTAATCGATTCCATCATTCCGGAGCCGCTGGGCGGCGCGCACCGTAATCCGGAAGCGATGGCGGCGTCGCTAAAAGCGCAGCTGCTGGAAGATTTAGCCGATCTCGATGTGTTAAGCACCGATGATTTAAAAAACCGTCGTTACCAGCGTTTGATGAGCTACGGTTACGCCTAA", "blast_result": {"qseqid": "NZ_AOXE01000033.1_17|864535644", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 99.896, "length": 960, "mismatch": 1, "gapopen": 0, "qstart": 1, "qend": 960, "sstart": 269916, "send": 270875, "evalue": 0.0, "bitscore": 1768.0, "qlen": 960, "slen": 699860, "sseq": "ATGAGTCTGAATTTCCTTGATTTTGAACAGCCGATAGCAGAGCTGGAAGCGAAAATCGATTCTCTGACTGCGGTAAGCCGCCAGGATGAGAAACTGGATATTAATATCGATGAAGAAGTCCATCGCCTGCGCGAAAAAAGCGTAGAACTGACGCGCAAAATCTTCGCCGATCTCGGCGCATGGCAGGTAGCCCAACTGGCGCGCCATCCGCAGCGTCCGTACACCTTGGATTATGTCCGTCTGGCGTTTGATGAGTTTGATGAGCTGGCGGGCGATCGCGCCTATGCTGATGACAAAGCCATCGTCGGCGGTATCGCGCGTCTGGAAGGGCGACCGGTGATGATCATTGGTCATCAGAAAGGTCGTGAAACCAAAGAAAAAATTCGTCGTAACTTTGGCATGCCAGCGCCGGAAGGCTACCGCAAAGCGCTGCGCCTGATGGAAATGGCTGAACGCTTCAACATGCCGATTATCACCTTCATCGACACCCCGGGCGCTTACCCTGGCGTGGGCGCGGAAGAGCGTGGTCAGTCTGAAGCTATCGCCCGCAACCTGCGTGAGATGTCTCGTCTGAACGTACCGGTCATCTGCACCGTGATTGGCGAAGGCGGCTCCGGCGGCGCATTGGCGATTGGCGTGGGTGATAAAGTGAATATGCTGCAATACAGCACCTATTCCGTTATCTCCCCGGAAGGTTGCGCCTCTATTTTGTGGAAGAGCGCCGACAAAGCGCCATTGGCTGCTGAAGCGATGGGCATCATCGCGCCGCGTCTGAAAGAGCTGAAGCTAATCGATTCCATCATTCCGGAGCCGCTGGGCGGCGCGCACCGTAATCCGGAAGCGATGGCGGCGTCGCTAAAAGCGCAGCTGCTGGAAGATTTAGCCGATCTCGATGTGTTAAGCACCGATGATTTAAAAAACCGTCGTTACCAGCGTTTGATGAGCTACGGTTACGCCTAA", "coverage": 1.0, "is_trunc": false, "marker": "NZ_AOXE01000033.1_17", "allele": 864535644, "is_match": true, "allele_name": 3779563470, "is_perfect": false, "has_perfect_match": false, "start_idx": 269915.0, "end_idx": 270874.0, "needs_revcomp": false, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOXE01000083.1_47": {"name": 2372254687, "seq": "ATGCGTAGCGCGCAGGTATACCGCTGGCAGATCCCCATGGACGCGGGGGTGGTTCTGCGCGACAGGCGGTTAAAAACTCGCGACGGGCTGTATGTTTGTCTGCGTGACGGCGAGCGTGAAGGGTGGGGAGAGATCTCCCCGCTGCCGGGCTTCAGTCAGGAAACGTGGGAAGAGGCGCAGACGGCGCTCCTGACATGGGTGAATGACTGGCTTCAGGGGAGCGAGGGATTACCGGAGATGCCTTCGGTCGCGTTTGGCGCAAGCTGCGCGCTGGCGGAACTGACTGGCGTCTTGCCGGAGGCGGCGGACTATCGCGCCGCGCCGTTATGCACTGGCGATCCTGACGATTTGGTACTGCGGCTTGCCGATATGCCCGGCGAGAAAATCGCTAAGGTCAAAGTGGGTCTCTATGAAGCGGTACGCGACGGCATGGTGGTTAATTTGCTGCTGGAGGCGATCCCGGATCTGCATCTGCGTCTGGATGCGAATCGCGCCTGGACGCCGCTAAAAGCCCAACAGTTCGCAAAGTATGTTAATCCGGATTACCGCGCTCGTATCGCCTTTCTCGAAGAACCGTGTAAGACGCGGGATGATTCCCGCGCCTTTGCCCGTGAAACCGGCATCGCGATTGCCTGGGACGAAAGTCTGCGCGAAGCGGATTTCACCTTTGAAGCCGAAGAGGGCGTCAGGGCTGTGGTTATCAAACCTACGCTGACCGGATCGCTTGATAAAGTGCGTGAGCAAGTCGCTGCCGCCCATGCGTTGGGACTGACGGCGGTCATCAGCTCTTCGATCGAGTCCAGCCTCGGCCTGACGCAACTGGCGCGGATTGCCGCCTGGTTGACGCCGGGAACGCTGCCCGGACTGGATACCTTGCATCTGATGCAGGCGCAACAGGTTCGCCCCTGGCCTGGTAACGCGTTGCCTTGTCTGAAGCGTGATGAGCTGGAACGACTGTTATGA", "blast_result": {"qseqid": "NZ_AOXE01000083.1_47|48430411", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 99.68799999999999, "length": 963, "mismatch": 3, "gapopen": 0, "qstart": 1, "qend": 963, "sstart": 633122, "send": 634084, "evalue": 0.0, "bitscore": 1762.0, "qlen": 963, "slen": 699860, "sseq": "ATGCGTAGCGCGCAGGTATACCGCTGGCAGATCCCCATGGACGCGGGGGTGGTTCTGCGCGACAGGCGGTTAAAAACTCGCGACGGGCTGTATGTTTGTCTGCGTGACGGCGAGCGTGAAGGGTGGGGAGAGATCTCCCCGCTGCCGGGCTTCAGTCAGGAAACGTGGGAAGAGGCGCAGACGGCGCTCCTGACATGGGTGAATGACTGGCTTCAGGGGAGCGAGGGATTACCGGAGATGCCTTCGGTCGCGTTTGGCGCAAGCTGCGCGCTGGCGGAACTGACTGGCGTCTTGCCGGAGGCGGCGGACTATCGCGCCGCGCCGTTATGCACTGGCGATCCTGACGATTTGGTACTGCGGCTTGCCGATATGCCCGGCGAGAAAATCGCTAAGGTCAAAGTGGGTCTCTATGAAGCGGTACGCGACGGCATGGTGGTTAATTTGCTGCTGGAGGCGATCCCGGATCTGCATCTGCGTCTGGATGCGAATCGCGCCTGGACGCCGCTAAAAGCCCAACAGTTCGCAAAGTATGTTAATCCGGATTACCGCGCTCGTATCGCCTTTCTCGAAGAACCGTGTAAGACGCGGGATGATTCCCGCGCCTTTGCCCGTGAAACCGGCATCGCGATTGCCTGGGACGAAAGTCTGCGCGAAGCGGATTTCACCTTTGAAGCCGAAGAGGGCGTCAGGGCTGTGGTTATCAAACCTACGCTGACCGGATCGCTTGATAAAGTGCGTGAGCAAGTCGCTGCCGCCCATGCGTTGGGACTGACGGCGGTCATCAGCTCTTCGATCGAGTCCAGCCTCGGCCTGACGCAACTGGCGCGGATTGCCGCCTGGTTGACGCCGGGAACGCTGCCCGGACTGGATACCTTGCATCTGATGCAGGCGCAACAGGTTCGCCCCTGGCCTGGTAACGCGTTGCCTTGTCTGAAGCGTGATGAGCTGGAACGACTGTTATGA", "coverage": 1.0, "is_trunc": false, "marker": "NZ_AOXE01000083.1_47", "allele": 48430411, "is_match": true, "allele_name": 2372254687, "is_perfect": false, "has_perfect_match": false, "start_idx": 633121.0, "end_idx": 634083.0, "needs_revcomp": false, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOXE01000052.1_43": {"name": 926214622, "seq": "ATGTTCACGGGAAGTATTGTCGCGCTTGTTACGCCGATGGATGAGAAAGGTAACGTCAGTAGGTCTTGCCTGAAAAAACTCATTGATTATCATGTCGCCAACGGTACCTCGGCGATTGTTTCGGTTGGCACCACCGGCGAGTCTGCCACGCTAAGCCATGATGAACATGGCGATGTCGTGATGATGACGCTGGAACTGGCTGACGGACGTATTCCGGTTATCGCTGGCACGGGCGCAAACGCGACCGCGGAAGCGATTAGCCTGACGCAGCGTTTTAACGATAGCGGCATTGTTGGCTGCCTGACGGTAACGCCGTACTACAATCGCCCCACGCAGGAAGGTTTGTTCCAGCATTTCAAAGCCATCGCGGAACACACTGACTTGCCGCAAATTCTGTATAATGTGCCGTCCCGTACCGGTTGCGACATGTTGCCGGAAACCGTGGGTCGTCTGGCGGAAATAAAAAATATTATCGCTATCAAAGAGGCGACAGGGAACTTAACCCGCGTTCACCAGATCAAAGAGCTGGTTTCAGACGATTTTATTCTGCTTAGCGGCGATGACGCGTCCGCGCTGGACTTTATGCAACTGGGTGGTCATGGCGTGATTTCCGTTACTGCTAACGTAGCGGCGCGCGATATGGCTGACATGTGCAAACTGGCGGCGGAAGGGCAATTTGCCGAGGCGCGCGCTATCAACCAGCGTCTGATGCCGTTACACAACAAACTATTTGTCGAACCCAATCCTATCCCGGTGAAATGGGCATGTAAGGCATTGGGTCTTGTGGCGACCGACACGCTGCGCCTGCCAATGACGCCTATCACCGACCATGGTCGTGACATCGTCAAAGCAGCGCTTCAGCATGCTGGCCTGCTGTAA", "blast_result": {"qseqid": "NZ_AOXE01000052.1_43|4288005734", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 99.88600000000001, "length": 879, "mismatch": 1, "gapopen": 0, "qstart": 1, "qend": 879, "sstart": 439617, "send": 440495, "evalue": 0.0, "bitscore": 1618.0, "qlen": 879, "slen": 699860, "sseq": "ATGTTCACGGGAAGTATTGTCGCGCTTGTTACGCCGATGGATGAGAAAGGTAACGTCAGTAGGTCTTGCCTGAAAAAACTCATTGATTATCATGTCGCCAACGGTACCTCGGCGATTGTTTCGGTTGGCACCACCGGCGAGTCTGCCACGCTAAGCCATGATGAACATGGCGATGTCGTGATGATGACGCTGGAACTGGCTGACGGACGTATTCCGGTTATCGCTGGCACGGGCGCAAACGCGACCGCGGAAGCGATTAGCCTGACGCAGCGTTTTAACGATAGCGGCATTGTTGGCTGCCTGACGGTAACGCCGTACTACAATCGCCCCACGCAGGAAGGTTTGTTCCAGCATTTCAAAGCCATCGCGGAACACACTGACTTGCCGCAAATTCTGTATAATGTGCCGTCCCGTACCGGTTGCGACATGTTGCCGGAAACCGTGGGTCGTCTGGCGGAAATAAAAAATATTATCGCTATCAAAGAGGCGACAGGGAACTTAACCCGCGTTCACCAGATCAAAGAGCTGGTTTCAGACGATTTTATTCTGCTTAGCGGCGATGACGCGTCCGCGCTGGACTTTATGCAACTGGGTGGTCATGGCGTGATTTCCGTTACTGCTAACGTAGCGGCGCGCGATATGGCTGACATGTGCAAACTGGCGGCGGAAGGGCAATTTGCCGAGGCGCGCGCTATCAACCAGCGTCTGATGCCGTTACACAACAAACTATTTGTCGAACCCAATCCTATCCCGGTGAAATGGGCATGTAAGGCATTGGGTCTTGTGGCGACCGACACGCTGCGCCTGCCAATGACGCCTATCACCGACCATGGTCGTGACATCGTCAAAGCAGCGCTTCAGCATGCTGGCCTGCTGTAA", "coverage": 1.0, "is_trunc": false, "marker": "NZ_AOXE01000052.1_43", "allele": 4288005734, "is_match": true, "allele_name": 926214622, "is_perfect": false, "has_perfect_match": false, "start_idx": 439616.0, "end_idx": 440494.0, "needs_revcomp": false, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOXE01000059.1_68": {"name": 3016847250, "seq": "ATGGCAACTTATCTCATCGGCGACGTTCACGGTTGCTACGACGAACTGATCGCCTTATTACAGCAAGTGGAATTTACGCCAGATACAGACACTCTATGGCTGACTGGCGATTTGGTCGCCCGCGGTCCCGGTTCGCTGGACGTGTTACGCTACGTCAAATCGCTTGGCAATAGCGTGCGTTTGGTGCTGGGGAATCACGATTTACACCTGTTGGCCGTATTCGCCGGGATTAGCCGCAACAAACCTAAAGACCGGCTGACCCCGCTTCTTGAAGCGCCGGACGCCGATGAGCTGTTGAATTGGTTACGCCGTCAGCCGCTGTTGCAGGTAGATGAAGAGAAAAAGCTGGTCATGGCGCATGCGGGTATTACCCCACAGTGGGATTTGCAGACGGCAAAAGAGTGCGCCCGCGATGTTGAAGCGGTGCTGTCGAGCGACTCGTACCCGTTTTTCCTCGACGCGATGTATGGCGATATGCCGAATAACTGGTCGCCGGAGTTAAGCGGTCTGGCGCGGCTACGCTTTATTACTAATGCCTTTACCCGTATGCGTTACTGCTTTCCTAACGGTCAACTGGATATGTACAGCAAAGCGTCGCCGGAAAATGCCCCTGCGCCGCTGAAGCCGTGGTTCGCCATTCCGGGACCGGTGAGCGAGGCTTACAGTATTGCTTTCGGGCACTGGGCGTCGCTGGAAGGGAAAGGGACGCCAGAAGGTATTTACGCGCTGGATACCGGCTGCTGCTGGGGCGGGGAGTTAACCTGTTTACGTTGGGAAGATAAACAGTATTTTGTGCAGCCGTCAAACCGCCAGATGGATATGGGCGAAGGCGAAGCGGTCAACGCCTGA", "blast_result": {"qseqid": "NZ_AOXE01000059.1_68|161924140", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 99.882, "length": 849, "mismatch": 1, "gapopen": 0, "qstart": 1, "qend": 849, "sstart": 102067, "send": 101219, "evalue": 0.0, "bitscore": 1563.0, "qlen": 849, "slen": 699860, "sseq": "ATGGCAACTTATCTCATCGGCGACGTTCACGGTTGCTACGACGAACTGATCGCCTTATTACAGCAAGTGGAATTTACGCCAGATACAGACACTCTATGGCTGACTGGCGATTTGGTCGCCCGCGGTCCCGGTTCGCTGGACGTGTTACGCTACGTCAAATCGCTTGGCAATAGCGTGCGTTTGGTGCTGGGGAATCACGATTTACACCTGTTGGCCGTATTCGCCGGGATTAGCCGCAACAAACCTAAAGACCGGCTGACCCCGCTTCTTGAAGCGCCGGACGCCGATGAGCTGTTGAATTGGTTACGCCGTCAGCCGCTGTTGCAGGTAGATGAAGAGAAAAAGCTGGTCATGGCGCATGCGGGTATTACCCCACAGTGGGATTTGCAGACGGCAAAAGAGTGCGCCCGCGATGTTGAAGCGGTGCTGTCGAGCGACTCGTACCCGTTTTTCCTCGACGCGATGTATGGCGATATGCCGAATAACTGGTCGCCGGAGTTAAGCGGTCTGGCGCGGCTACGCTTTATTACTAATGCCTTTACCCGTATGCGTTACTGCTTTCCTAACGGTCAACTGGATATGTACAGCAAAGCGTCGCCGGAAAATGCCCCTGCGCCGCTGAAGCCGTGGTTCGCCATTCCGGGACCGGTGAGCGAGGCTTACAGTATTGCTTTCGGGCACTGGGCGTCGCTGGAAGGGAAAGGGACGCCAGAAGGTATTTACGCGCTGGATACCGGCTGCTGCTGGGGCGGGGAGTTAACCTGTTTACGTTGGGAAGATAAACAGTATTTTGTGCAGCCGTCAAACCGCCAGATGGATATGGGCGAAGGCGAAGCGGTCAACGCCTGA", "coverage": 1.0, "is_trunc": false, "marker": "NZ_AOXE01000059.1_68", "allele": 161924140, "is_match": true, "allele_name": 3016847250, "is_perfect": false, "has_perfect_match": false, "start_idx": 101218.0, "end_idx": 102066.0, "needs_revcomp": true, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOXE01000059.1_66": {"name": 3105746335, "seq": "ATGAATAATCGAGTCCATCAGGGCCATTTAGCCCGTAAACGCTTCGGGCAAAACTTTCTCAACGATCGGTTTGTGATCGACAGTATTGTTTCTGCTATTAATCCGCAAAAAGGCCAGGCGATGGTTGAAATCGGCCCCGGTCTGGCGGCGCTGACGGAGCCGGTCGGCGAACGACTGGATAAGCTCACGGTCATTGAACTTGACCGCGATCTGGCGGCGCGTTTGCAAACCCATCCGTTTTTAGGGCCGAAGCTGACTATTTATCAGCAGGACGCCATGACCATGAACTTTGGCGAACTGTCTGCGCAGTTGGGCCAGCCGCTGCGTGTGTTCGGCAATCTGCCCTATAATATCTCCACCCCGCTGATGTTCCATCTCTTTAGCTATACTGATGCCATTGCCGACATGCACTTTATGTTGCAAAAAGAAGTGGTAAATCGTCTGGTTGCAGGGCCGAACAGCAAAGCGTATGGTCGTTTAAGCGTGATGGCGCAATATTACTGTCAGGTGATCCCGGTGCTTGAAGTGCCGCCATCCGCCTTCACGCCGCCGCCCAAAGTGGACTCCGCCGTGGTGCGTCTGGTTCCACACGCAACGATGCCTTACCCGGTTAAAGATATTCGCGTGTTGAGCCGTATTACCACCGAGGCCTTTAACCAGCGCCGTAAAACGATCCGTAATAGTCTCGGCAATCTTTTTAGCGTTGAGACGTTGACGGAAATGGGTATTGACCCGGCAATGCGCGCGGAAAATATCTCTGTCGCGCAGTACTGCCAGATGGCCAACTATCTGTCGGAAAACGCGCCTTTGAAGGAGAGTTAA", "blast_result": {"qseqid": "NZ_AOXE01000059.1_66|2100994146", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 99.757, "length": 822, "mismatch": 2, "gapopen": 0, "qstart": 1, "qend": 822, "sstart": 103279, "send": 102458, "evalue": 0.0, "bitscore": 1507.0, "qlen": 822, "slen": 699860, "sseq": "ATGAATAATCGAGTCCATCAGGGCCATTTAGCCCGTAAACGCTTCGGGCAAAACTTTCTCAACGATCGGTTTGTGATCGACAGTATTGTTTCTGCTATTAATCCGCAAAAAGGCCAGGCGATGGTTGAAATCGGCCCCGGTCTGGCGGCGCTGACGGAGCCGGTCGGCGAACGACTGGATAAGCTCACGGTCATTGAACTTGACCGCGATCTGGCGGCGCGTTTGCAAACCCATCCGTTTTTAGGGCCGAAGCTGACTATTTATCAGCAGGACGCCATGACCATGAACTTTGGCGAACTGTCTGCGCAGTTGGGCCAGCCGCTGCGTGTGTTCGGCAATCTGCCCTATAATATCTCCACCCCGCTGATGTTCCATCTCTTTAGCTATACTGATGCCATTGCCGACATGCACTTTATGTTGCAAAAAGAAGTGGTAAATCGTCTGGTTGCAGGGCCGAACAGCAAAGCGTATGGTCGTTTAAGCGTGATGGCGCAATATTACTGTCAGGTGATCCCGGTGCTTGAAGTGCCGCCATCCGCCTTCACGCCGCCGCCCAAAGTGGACTCCGCCGTGGTGCGTCTGGTTCCACACGCAACGATGCCTTACCCGGTTAAAGATATTCGCGTGTTGAGCCGTATTACCACCGAGGCCTTTAACCAGCGCCGTAAAACGATCCGTAATAGTCTCGGCAATCTTTTTAGCGTTGAGACGTTGACGGAAATGGGTATTGACCCGGCAATGCGCGCGGAAAATATCTCTGTCGCGCAGTACTGCCAGATGGCCAACTATCTGTCGGAAAACGCGCCTTTGAAGGAGAGTTAA", "coverage": 1.0, "is_trunc": false, "marker": "NZ_AOXE01000059.1_66", "allele": 2100994146, "is_match": true, "allele_name": 3105746335, "is_perfect": false, "has_perfect_match": false, "start_idx": 102457.0, "end_idx": 103278.0, "needs_revcomp": true, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOXE01000033.1_51": {"name": 3293595301, "seq": "ATGCAGGAAAACCACATTCATTCCGATACCACCTTTGCGCTGCGAAGCGTCGCTTTTCGTGTGCCGGGCCGCACGCTTTTACACCCCCTCTCGTTAACGTTTCCCGCAGGTCGAGTCACCGGACTTATCGGCCATAATGGTTCCGGTAAATCCACGCTGTTAAAAATGCTGGGCCGCCATCAGCTGCCTTCCGAAGGGGATATTCTGCTCGACAATCAGCCGCTGGCGAGCTGGAGCAGCAAGGCGTTTGCCCGCAAAGTTGCCTATCTGCCTCAACAATTGCCGCAGGCGGAAGGAATGACGGTGCGCGAACTGGTGGCGATTGGCCGCTATCCGTGGCACGGCGCGTTGGGACGCTTTGGCGTCGCGGACCGGGAAAAAGTAGACGAGGCGATTACGCTGGTCGGCTTAAAACCGCTGGCGCATCGTCTGGTCGATAGCCTGTCCGGCGGTGAACGCCAGCGCGCGTGGATTGCCATGCTGGTCGCGCAGGACAGCCGTTGTCTGCTGCTGGATGAGCCGACGTCAGCGCTGGATATCGCCCATCAGGTTGACGTGCTGGCGCTGGTGCATCGTTTAAGCCAACAGCGCGGGCTGACGGTGGTTGCGGTGCTGCACGATATCAACATGGCGGCCCGCTACTGTGATTATTTAGTAGCGCTACGCGGCGGTGAAATGATTGCGCAAGGAACGCCTGCGGAACTGATGCGCAGTGACACGCTGGAACAGATTTACGGTATCCCGATGGGTATCCTTCCGCATCCGGCGGGCGCCGCGCCTGTGAGTTTTGTGTATTAA", "blast_result": {"qseqid": "NZ_AOXE01000033.1_51|3293595301", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 100.0, "length": 798, "mismatch": 0, "gapopen": 0, "qstart": 1, "qend": 798, "sstart": 230378, "send": 231175, "evalue": 0.0, "bitscore": 1474.0, "qlen": 798, "slen": 699860, "sseq": "ATGCAGGAAAACCACATTCATTCCGATACCACCTTTGCGCTGCGAAGCGTCGCTTTTCGTGTGCCGGGCCGCACGCTTTTACACCCCCTCTCGTTAACGTTTCCCGCAGGTCGAGTCACCGGACTTATCGGCCATAATGGTTCCGGTAAATCCACGCTGTTAAAAATGCTGGGCCGCCATCAGCTGCCTTCCGAAGGGGATATTCTGCTCGACAATCAGCCGCTGGCGAGCTGGAGCAGCAAGGCGTTTGCCCGCAAAGTTGCCTATCTGCCTCAACAATTGCCGCAGGCGGAAGGAATGACGGTGCGCGAACTGGTGGCGATTGGCCGCTATCCGTGGCACGGCGCGTTGGGACGCTTTGGCGTCGCGGACCGGGAAAAAGTAGACGAGGCGATTACGCTGGTCGGCTTAAAACCGCTGGCGCATCGTCTGGTCGATAGCCTGTCCGGCGGTGAACGCCAGCGCGCGTGGATTGCCATGCTGGTCGCGCAGGACAGCCGTTGTCTGCTGCTGGATGAGCCGACGTCAGCGCTGGATATCGCCCATCAGGTTGACGTGCTGGCGCTGGTGCATCGTTTAAGCCAACAGCGCGGGCTGACGGTGGTTGCGGTGCTGCACGATATCAACATGGCGGCCCGCTACTGTGATTATTTAGTAGCGCTACGCGGCGGTGAAATGATTGCGCAAGGAACGCCTGCGGAACTGATGCGCAGTGACACGCTGGAACAGATTTACGGTATCCCGATGGGTATCCTTCCGCATCCGGCGGGCGCCGCGCCTGTGAGTTTTGTGTATTAA", "coverage": 1.0, "is_trunc": false, "marker": "NZ_AOXE01000033.1_51", "allele": 3293595301, "is_match": true, "allele_name": 3293595301, "is_perfect": true, "has_perfect_match": true, "start_idx": 230377.0, "end_idx": 231174.0, "needs_revcomp": false, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOXE01000033.1_21": {"name": 607954140, "seq": "GTGATTGATAAATCCGTCTTTATTCATCCTACCGCCATTGTGGAAGACGGCGCTGTAATTGGCGCTAATGCCCACATTGGTCCCTTTTGTATTGTTGGGCCGCAGGTCGAAATTGGTGAGGGAACCGTACTGAAGTCTCATGTGGTCGTAAATGGTCAAACCAAAATCGGCCGCGACAACGAGATTTATCAGTTTGCCTCCATCGGTGAAGTGAACCAGGATCTGAAATATGCGGGTGAGCCAACCCGTGTGGAAATTGGCGATCGTAACCGCATCCGCGAAAGCGTCACCATTCATCGTGGTACAGTGCAGGGCGGTGGGTTGACGAAGGTGGGTAGCGATAACCTGCTGATGATCAATGCGCATGTCGCACATGATTGTACGGTAGGTAATCGCTGTATCCTCGCCAACAACGCCACGCTGGCGGGGCACGTATCAGTCGATGATTTTGCGATCATCGGCGGTATGACGGCAGTTCATCAATTCTGCATTATCGGTGCGCATGTGATGGTCGGCGGCTGCTCCGGCGTGGCGCAGGATGTCCCTCCGTATGTGATTGCGCAGGGTAACCATGCGACGCCGTTCGGGGTAAATATCGAAGGGCTGAAGCGTCGCGGCTTTAGCCGTGAAGGGCTGGTGGCGATTCGTAATGCCTACAAACTGTTGTACCGCAGTGGTAAAACGCTCGACGAAGCGAAGCTGGAAATCGCTGAACTTGCTGAAAAGCATCCGGAAGTGAAGGCGTTTACCGAGTTCTTTGAGCGTTCAACGCGCGGTCCGATTCGTTAA", "blast_result": {"qseqid": "NZ_AOXE01000033.1_21|607954140", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 100.0, "length": 789, "mismatch": 0, "gapopen": 0, "qstart": 1, "qend": 789, "sstart": 263868, "send": 264656, "evalue": 0.0, "bitscore": 1458.0, "qlen": 789, "slen": 699860, "sseq": "GTGATTGATAAATCCGTCTTTATTCATCCTACCGCCATTGTGGAAGACGGCGCTGTAATTGGCGCTAATGCCCACATTGGTCCCTTTTGTATTGTTGGGCCGCAGGTCGAAATTGGTGAGGGAACCGTACTGAAGTCTCATGTGGTCGTAAATGGTCAAACCAAAATCGGCCGCGACAACGAGATTTATCAGTTTGCCTCCATCGGTGAAGTGAACCAGGATCTGAAATATGCGGGTGAGCCAACCCGTGTGGAAATTGGCGATCGTAACCGCATCCGCGAAAGCGTCACCATTCATCGTGGTACAGTGCAGGGCGGTGGGTTGACGAAGGTGGGTAGCGATAACCTGCTGATGATCAATGCGCATGTCGCACATGATTGTACGGTAGGTAATCGCTGTATCCTCGCCAACAACGCCACGCTGGCGGGGCACGTATCAGTCGATGATTTTGCGATCATCGGCGGTATGACGGCAGTTCATCAATTCTGCATTATCGGTGCGCATGTGATGGTCGGCGGCTGCTCCGGCGTGGCGCAGGATGTCCCTCCGTATGTGATTGCGCAGGGTAACCATGCGACGCCGTTCGGGGTAAATATCGAAGGGCTGAAGCGTCGCGGCTTTAGCCGTGAAGGGCTGGTGGCGATTCGTAATGCCTACAAACTGTTGTACCGCAGTGGTAAAACGCTCGACGAAGCGAAGCTGGAAATCGCTGAACTTGCTGAAAAGCATCCGGAAGTGAAGGCGTTTACCGAGTTCTTTGAGCGTTCAACGCGCGGTCCGATTCGTTAA", "coverage": 1.0, "is_trunc": false, "marker": "NZ_AOXE01000033.1_21", "allele": 607954140, "is_match": true, "allele_name": 607954140, "is_perfect": true, "has_perfect_match": true, "start_idx": 263867.0, "end_idx": 264655.0, "needs_revcomp": false, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOXE01000033.1_34": {"name": 3673111880, "seq": "ATGGCTATCTCTATCAAGACATCTGAAGACATCGAAAAAATGCGCGTCGCGGGCCGTCTGGCAGCCGAAGTGCTGGAAATGATCGAACCGTATATCAAACCGGGCGTCACCACCGGCGAACTGGACCGTATCTGTAACGATTACATCGTTAACGAACAACACGCGATCTCCGCCTGCCTCGGCTACCACGGCTATCCGAAATCCGTCTGTATCTCTATTAATGAAGTGGTGTGCCACGGCATTCCGGATGACGCTAAACATCTGAAAGATGGTGATATCGTCAACATCGACGTGACCGTGATTAAAGATGAATTCCACGGCGATACCTCAAAGATGTTTATCGTCGGCAAACCGACTATTCTGGGCGAGCGTCTGTGCCGCGTCACGCAAGAGAGCCTGTATCTGGGCATCAAAATGGTGAAACCGGGCATCCGCCTGCGCACCATTGGCGCCGCCATCCAGAAATATGCCGAAGGCGAAGGTTTCTCCGTGGTACGTGAATACTGCGGACACGGTATTGGTCGCGGCTTCCATGAAGAACCGCAGGTGCTGCATTATGATGCAGACGATGGTGGCGTCGTGTTGCAGCCTGGCATGACCTTTACCATTGAACCGATGCTGAATGCCGGGGATTACCGTATCCGCACCATGAAAGACGGCTGGACGGTAAAAACCAAAGACCGCAGCTTGTCTGCTCAGTACGAGCATACTATTGTGGTAACGGAAAACGGCTGTGAAATTCTGACGCTGCGTAAAGATGACACCATCCCGGCGATCATCACACACGACGAATAA", "blast_result": {"qseqid": "NZ_AOXE01000033.1_34|3574109408", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 99.62200000000001, "length": 793, "mismatch": 3, "gapopen": 0, "qstart": 3, "qend": 795, "sstart": 250720, "send": 249928, "evalue": 0.0, "bitscore": 1448.0, "qlen": 795, "slen": 699860, "sseq": "GGCTATCTCTATCAAGACATCTGAAGACATCGAAAAAATGCGCGTCGCGGGCCGTCTGGCAGCCGAAGTGCTGGAAATGATCGAACCGTATATCAAACCGGGCGTCACCACCGGCGAACTGGACCGTATCTGTAACGATTACATCGTTAACGAACAACACGCGATCTCCGCCTGCCTCGGCTACCACGGCTATCCGAAATCCGTCTGTATCTCTATTAATGAAGTGGTGTGCCACGGCATTCCGGATGACGCTAAACATCTGAAAGATGGTGATATCGTCAACATCGACGTGACCGTGATTAAAGATGAATTCCACGGCGATACCTCAAAGATGTTTATCGTCGGCAAACCGACTATTCTGGGCGAGCGTCTGTGCCGCGTCACGCAAGAGAGCCTGTATCTGGGCATCAAAATGGTGAAACCGGGCATCCGCCTGCGCACCATTGGCGCCGCCATCCAGAAATATGCCGAAGGCGAAGGTTTCTCCGTGGTACGTGAATACTGCGGACACGGTATTGGTCGCGGCTTCCATGAAGAACCGCAGGTGCTGCATTATGATGCAGACGATGGTGGCGTCGTGTTGCAGCCTGGCATGACCTTTACCATTGAACCGATGCTGAATGCCGGGGATTACCGTATCCGCACCATGAAAGACGGCTGGACGGTAAAAACCAAAGACCGCAGCTTGTCTGCTCAGTACGAGCATACTATTGTGGTAACGGAAAACGGCTGTGAAATTCTGACGCTGCGTAAAGATGACACCATCCCGGCGATCATCACACACGACGAATAA", "coverage": 0.9974842767295597, "is_trunc": false, "marker": "NZ_AOXE01000033.1_34", "allele": 3574109408, "is_match": false, "allele_name": 2411902546, "is_perfect": false, "has_perfect_match": false, "start_idx": 249927.0, "end_idx": 250721.0, "needs_revcomp": true, "trunc": false, "is_extended": true, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false, "qseq_msa": "aaggctatctctatcaagacatctgaagacatcgaaaaaatgcgcgtcgcgggccgtctggcagccgaagtgctggaaatgatcgaaccgtatatcaaaccgggcgtcaccaccggcgaactggaccgtatctgtaacgattacatcgttaacgaacaacacgcgatctccgcctgcctcggctaccacggctatccgaaatccgtctgtatctctattaatgaagtggtgtgccacggcattccggatgacgctaaacatctgaaagatggtgatatcgtcaacatcgacgtgaccgtgattaaagatgaattccacggcgatacctcaaagatgtttatcgtcggcaaaccgaccattctgggcgagcgtctgtgccgcgtcacgcaagagagcctgtatctgggcatcaaaatggtgaaaccgggcatccgcctgcgcaccattggcgccgccatccagaaatatgccgaaggcgaaggtttctccgtggtacgtgaatactgcggacacggtattggtcgcggcttccatgaagaaccgcaggtgctgcattatgatgcagacgatggcggcgtcgtgttgcagcctggcatgacctttaccattgaaccgatgctgaacgccggggattaccgtatccgcaccatgaaagacggctggacggtaaaaaccaaagaccgcagcttgtctgctcagtacgagcatactattgtggtaacggaaaacggctgtgaaattctgacgctgcgtaaagatgacaccatcccggcgatcatcacacacgacgaataa", "qseq_msa_trimmed": "aaggctatctctatcaagacatctgaagacatcgaaaaaatgcgcgtcgcgggccgtctggcagccgaagtgctggaaatgatcgaaccgtatatcaaaccgggcgtcaccaccggcgaactggaccgtatctgtaacgattacatcgttaacgaacaacacgcgatctccgcctgcctcggctaccacggctatccgaaatccgtctgtatctctattaatgaagtggtgtgccacggcattccggatgacgctaaacatctgaaagatggtgatatcgtcaacatcgacgtgaccgtgattaaagatgaattccacggcgatacctcaaagatgtttatcgtcggcaaaccgaccattctgggcgagcgtctgtgccgcgtcacgcaagagagcctgtatctgggcatcaaaatggtgaaaccgggcatccgcctgcgcaccattggcgccgccatccagaaatatgccgaaggcgaaggtttctccgtggtacgtgaatactgcggacacggtattggtcgcggcttccatgaagaaccgcaggtgctgcattatgatgcagacgatggcggcgtcgtgttgcagcctggcatgacctttaccattgaaccgatgctgaacgccggggattaccgtatccgcaccatgaaagacggctggacggtaaaaaccaaagaccgcagcttgtctgctcagtacgagcatactattgtggtaacggaaaacggctgtgaaattctgacgctgcgtaaagatgacaccatcccggcgatcatcacacacgacgaataa", "sseq_msa": "atggctatctctatcaagacatctgaagacatcgaaaaaatgcgcgtcgcgggccgtctggcagccgaagtgctggaaatgatcgaaccgtatatcaaaccgggcgtcaccaccggcgaactggaccgtatctgtaacgattacatcgttaacgaacaacacgcgatctccgcctgcctcggctaccacggctatccgaaatccgtctgtatctctattaatgaagtggtgtgccacggcattccggatgacgctaaacatctgaaagatggtgatatcgtcaacatcgacgtgaccgtgattaaagatgaattccacggcgatacctcaaagatgtttatcgtcggcaaaccgactattctgggcgagcgtctgtgccgcgtcacgcaagagagcctgtatctgggcatcaaaatggtgaaaccgggcatccgcctgcgcaccattggcgccgccatccagaaatatgccgaaggcgaaggtttctccgtggtacgtgaatactgcggacacggtattggtcgcggcttccatgaagaaccgcaggtgctgcattatgatgcagacgatggtggcgtcgtgttgcagcctggcatgacctttaccattgaaccgatgctgaatgccggggattaccgtatccgcaccatgaaagacggctggacggtaaaaaccaaagaccgcagcttgtctgctcagtacgagcatactattgtggtaacggaaaacggctgtgaaattctgacgctgcgtaaagatgacaccatcccggcgatcatcacacacgacgaataa", "sseq_msa_trimmed": "atggctatctctatcaagacatctgaagacatcgaaaaaatgcgcgtcgcgggccgtctggcagccgaagtgctggaaatgatcgaaccgtatatcaaaccgggcgtcaccaccggcgaactggaccgtatctgtaacgattacatcgttaacgaacaacacgcgatctccgcctgcctcggctaccacggctatccgaaatccgtctgtatctctattaatgaagtggtgtgccacggcattccggatgacgctaaacatctgaaagatggtgatatcgtcaacatcgacgtgaccgtgattaaagatgaattccacggcgatacctcaaagatgtttatcgtcggcaaaccgactattctgggcgagcgtctgtgccgcgtcacgcaagagagcctgtatctgggcatcaaaatggtgaaaccgggcatccgcctgcgcaccattggcgccgccatccagaaatatgccgaaggcgaaggtttctccgtggtacgtgaatactgcggacacggtattggtcgcggcttccatgaagaaccgcaggtgctgcattatgatgcagacgatggtggcgtcgtgttgcagcctggcatgacctttaccattgaaccgatgctgaatgccggggattaccgtatccgcaccatgaaagacggctggacggtaaaaaccaaagaccgcagcttgtctgctcagtacgagcatactattgtggtaacggaaaacggctgtgaaattctgacgctgcgtaaagatgacaccatcccggcgatcatcacacacgacgaataa"}}, "NZ_AOXE01000052.1_131": {"name": 4160823845, "seq": "GTGTATCAGGTCTGTTTCGTGTGCTGGATTGTTGACGCATTCATTTATTGGTATCGCATGAACCCCATCGTAATTAATCGGCTTCAACGGAAGCTGGGCTACACTTTTAATCATCAGGAGCTGTTGCAGCAGGCATTAACTCACCGCAGCGCCAGCAGTAAACATAACGAACGCCTGGAGTTTTTAGGCGATTCAATCCTGAGCTTCGTTATCGCTAACGCGCTTTATCACCGTTTTCCACGGGTGGATGAGGGAGATATGAGCCGTATGCGCGCCACGTTGGTACGTGGTAATACGCTGGCGGAATTAGCCCGTGAATTTGATTTAGGCGAGTGCCTGCGTTTAGGGCCGGGCGAATTAAAAAGCGGCGGATTTCGTCGGGAGTCCATTCTGGCGGACACCGTGGAAGCGTTAATCGGCGGAGTATTTCTCGATAGCAATATCCAGACCGTCGAGCAGTTAATCCTTAACTGGTATAAAACCCGTCTGGATGAGATAAGTCCGGGCGATAAACAAAAAGATCCTAAAACGCGCTTGCAGGAGTATTTGCAGGGTCGCCATCTGCCGCTGCCATCTTACCTGGTTGTGCAGGTACGCGGCGAGGCGCACGATCAGGAATTTACTATCCACTGCCAGGTCAGCGGCCTGAGCGAACCGGTGGTTGGCACGGGTTCCAGCCGTCGTAAGGCGGAGCAGGCTGCCGCCGAACAGGCGCTGAAAAAACTGGAGTTGGAATGA", "blast_result": {"qseqid": "NZ_AOXE01000052.1_131|731848309", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 99.86399999999999, "length": 738, "mismatch": 1, "gapopen": 0, "qstart": 1, "qend": 738, "sstart": 315198, "send": 315935, "evalue": 0.0, "bitscore": 1358.0, "qlen": 738, "slen": 699860, "sseq": "GTGTATCAGGTCTGTTTCGTGTGCTGGATTGTTGACGCATTCATTTATTGGTATCGCATGAACCCCATCGTAATTAATCGGCTTCAACGGAAGCTGGGCTACACTTTTAATCATCAGGAGCTGTTGCAGCAGGCATTAACTCACCGCAGCGCCAGCAGTAAACATAACGAACGCCTGGAGTTTTTAGGCGATTCAATCCTGAGCTTCGTTATCGCTAACGCGCTTTATCACCGTTTTCCACGGGTGGATGAGGGAGATATGAGCCGTATGCGCGCCACGTTGGTACGTGGTAATACGCTGGCGGAATTAGCCCGTGAATTTGATTTAGGCGAGTGCCTGCGTTTAGGGCCGGGCGAATTAAAAAGCGGCGGATTTCGTCGGGAGTCCATTCTGGCGGACACCGTGGAAGCGTTAATCGGCGGAGTATTTCTCGATAGCAATATCCAGACCGTCGAGCAGTTAATCCTTAACTGGTATAAAACCCGTCTGGATGAGATAAGTCCGGGCGATAAACAAAAAGATCCTAAAACGCGCTTGCAGGAGTATTTGCAGGGTCGCCATCTGCCGCTGCCATCTTACCTGGTTGTGCAGGTACGCGGCGAGGCGCACGATCAGGAATTTACTATCCACTGCCAGGTCAGCGGCCTGAGCGAACCGGTGGTTGGCACGGGTTCCAGCCGTCGTAAGGCGGAGCAGGCTGCCGCCGAACAGGCGCTGAAAAAACTGGAGTTGGAATGA", "coverage": 1.0, "is_trunc": false, "marker": "NZ_AOXE01000052.1_131", "allele": 731848309, "is_match": true, "allele_name": 4160823845, "is_perfect": false, "has_perfect_match": false, "start_idx": 315197.0, "end_idx": 315934.0, "needs_revcomp": false, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOXE01000052.1_128": {"name": 2110459436, "seq": "ATGGCTGAATTACTGTTAGGCGTCAATATTGACCACATTGCCACGTTACGTAATGCGCGCGGCACCGACTATCCGGATCCGGTACAGGCGGCGTTTATTGCTGAACAGGCAGGCGCGGACGGCATTACCGTACACCTGCGCGAAGATCGTCGCCACATTACCGATCGCGATGTGCGCATTCTGCGTCAGACGCTGCATACGCGTATGAATCTGGAGATGGCGGTGACCGAAGAGATGCTGGCGATCGCCGTAGAAACCAGGCCGCATTTCTGTTGTCTGGTGCCGGAAAAACGCCAGGAAGTCACCACCGAAGGCGGCCTGGATGTGGCCGGACAGCGCGATAAAATGCGTGATGCCTGTGCGCGCCTAGCGGCGGCTGGCATCCAGGTTTCGCTCTTTATCGATGCCGATGAAAGGCAAATCAACGCGGCGGCGGAAGTCGGCGCGCCGTTTATCGAAATCCATACCGGCTGCTATGCCAACGCAGAAACCGATGCGGAACAGGCAAAAGAGCTGGCGCGTATTGCCAGCGCCGCGACCCTGGCGGCCCGTCTGGGGCTAAAAGTAAATGCGGGTCATGGCCTGACCTACCATAACGTCAAAGCTATTGCCGCACTGCCGGAAATGCACGAGCTCAATATCGGTCATGCCATTATTGGTCGGGCGGTGATGACGGGGCTGAAAGAGGCGGTGGCTGAAATGAAACGTTTGATGCTGGAAGCGCGCGGCTAA", "blast_result": {"qseqid": "NZ_AOXE01000052.1_128|2084698191", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 99.863, "length": 732, "mismatch": 0, "gapopen": 1, "qstart": 1, "qend": 731, "sstart": 317589, "send": 318320, "evalue": 0.0, "bitscore": 1345.0, "qlen": 731, "slen": 699860, "sseq": "ATGGCTGAATTACTGTTAGGCGTCAATATTGACCACATTGCCACGTTACGTAATGCGCGCGGCACCGACTATCCGGATCCGGTACAGGCGGCGTTTATTGCTGAACAGGCAGGCGCGGACGGCATTACCGTACACCTGCGCGAAGATCGTCGCCACATTACCGATCGCGATGTGCGCATTCTGCGTCAGACGCTGCATACGCGTATGAATCTGGAGATGGCGGTGACCGAAGAGATGCTGGCGATCGCCGTAGAAACCAGGCCGCATTTCTGTTGTCTGGTGCCGGAAAAACGCCAGGAAGTCACCACCGAAGGCGGCCTGGATGTGGCCGGACAGCGCGATAAAATGCGTGATGCCTGTGCGCGCCTAGCGGCGGCTGGCATCCAGGTTTCGCTCTTTATCGATGCCGATGAAAGGCAAATCAACGCGGCGGCGGAAGTCGGCGCGCCGTTTATCGAAATCCATACCGGCTGCTATGCCAACGCAGAAACCGATGCGGAACAGGCAAAAGAGCTGGCGCGTATTGCCAGCGCCGCGACCCTGGCGGCCCGTCTGGGGCTAAAAGTAAATGCGGGTCATGGCCTGACCTACCATAACGTCAAAGCTATTGCCGCACTGCCGGAAATGCACGAGCTCAATATCGGTCATGCCATTATTGGTCGGGCGGTGATGACGGGGCTGAAAGAGGCGGTGGCTGAAATGAAACGTTTGATGCTGGAAGCGCGCGGCTAA", "coverage": 1.0013679890560876, "is_trunc": false, "marker": "NZ_AOXE01000052.1_128", "allele": 2084698191, "is_match": true, "allele_name": 2110459436, "is_perfect": false, "has_perfect_match": false, "start_idx": 317588.0, "end_idx": 318319.0, "needs_revcomp": false, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOXE01000052.1_41": {"name": 1973458150, "seq": "ATGCAAAAGCAAGCTGAGTTGTATCGTGGTAAAGCGAAAACCGTATACAGCACGGAAAACCCGGACCTGTTGGTGCTCGAATTCCGCAATGATACGTCAGCAGGGGATGGCGCGCGCATTGAACAGTTTGATCGCAAAGGCATGGTAAATAACAAATTCAACCATTTCATTATGACCAAACTGGCCGAGGCGGGCATCCCGACCCAGATGGAACGTTTGCTGTCTGATACCGAGTGTCTGGTGAAGAAGCTGGAGATGGTGCCGGTTGAATGTGTGGTGCGCAACCGTGCGGCAGGGTCGCTGGTCAAGCGTCTGGGCGTGGAAGAAGGCATGGAGCTTAACCCGCCGATCTTCGATCTGTTCCTGAAAAACGACGCGCTGCACGACCCGATGGTGAATAGTTCCTACTGTGAAACTTTCGGGTGGGTAAGCCAGGAAAATCTGGCGCGTATGAAAGAGCTAACCTACAAAGCCAACGACGTACTAAAAAAACTGTTTGATGACGCGGGTCTTATCCTGGTGGATTTCAAACTGGAGTTTGGCCTGTATAAAGGCGAAGTGGTGCTGGGCGATGAGTTTTCACCGGACGGTAGCCGCCTGTGGGATAAAGAGACGCTGGACAAAATGGACAAAGACCGCTTCCGCCAGAGCCTGGGCGGTCTGATTGAAGCCTATGAAGCCGTTGCGCATCGCCTGGGCGTGAAATTAGATTAA", "blast_result": {"qseqid": "NZ_AOXE01000052.1_41|3900481525", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 99.86, "length": 714, "mismatch": 1, "gapopen": 0, "qstart": 1, "qend": 714, "sstart": 441721, "send": 442434, "evalue": 0.0, "bitscore": 1314.0, "qlen": 714, "slen": 699860, "sseq": "ATGCAAAAGCAAGCTGAGTTGTATCGTGGTAAAGCGAAAACCGTATACAGCACGGAAAACCCGGACCTGTTGGTGCTCGAATTCCGCAATGATACGTCAGCAGGGGATGGCGCGCGCATTGAACAGTTTGATCGCAAAGGCATGGTAAATAACAAATTCAACCATTTCATTATGACCAAACTGGCCGAGGCGGGCATCCCGACCCAGATGGAACGTTTGCTGTCTGATACCGAGTGTCTGGTGAAGAAGCTGGAGATGGTGCCGGTTGAATGTGTGGTGCGCAACCGTGCGGCAGGGTCGCTGGTCAAGCGTCTGGGCGTGGAAGAAGGCATGGAGCTTAACCCGCCGATCTTCGATCTGTTCCTGAAAAACGACGCGCTGCACGACCCGATGGTGAATAGTTCCTACTGTGAAACTTTCGGGTGGGTAAGCCAGGAAAATCTGGCGCGTATGAAAGAGCTAACCTACAAAGCCAACGACGTACTAAAAAAACTGTTTGATGACGCGGGTCTTATCCTGGTGGATTTCAAACTGGAGTTTGGCCTGTATAAAGGCGAAGTGGTGCTGGGCGATGAGTTTTCACCGGACGGTAGCCGCCTGTGGGATAAAGAGACGCTGGACAAAATGGACAAAGACCGCTTCCGCCAGAGCCTGGGCGGTCTGATTGAAGCCTATGAAGCCGTTGCGCATCGCCTGGGCGTGAAATTAGATTAA", "coverage": 1.0, "is_trunc": false, "marker": "NZ_AOXE01000052.1_41", "allele": 3900481525, "is_match": true, "allele_name": 1973458150, "is_perfect": false, "has_perfect_match": false, "start_idx": 441720.0, "end_idx": 442433.0, "needs_revcomp": false, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOXI01000005.1_72": {"name": 1007978530, "seq": "ATGAAATCAATCAAATCATTAATGCCTGAGGAGGCTCACGTGCAGTGTAAAGGTTTTCTGTTTGATCTGGATGGAACGTTGGTTGACTCATTACCTGCCGTCGAACGCGCGTGGTGTAGCTGGGCCGATCGTTTTAACCTTGCTCATGATGAGGTGCTGGGCTTTATTCATGGCAAACAGGCGATCACCTCGTTGCGGCATTTTATGGCGGGTAAATCGGAGGCGGAAATTGCCGCTGAGTTTACGCGCCTGGAGCAAATAGAAGCCACTGAAACCGCAGGGATCACCGCGTTGCCGGGGGCAGTCGATTTACTCAATCACCTGAATAAAGCGGGCATTCCGTGGGCTATCGTCACCTCCGGTTCAATGCCGGTCGCGCGTGCGCGCCATCAGGTCGCGGGCCTTCCAGCGCCAGAGGTGTTTGTCACCGCCGAACGAGTCAAACGCGGCAAACCGGAGCCGGATGCGTATTTGCTGGGCGCACAACTGCTTGGCCTGGCCCCTCAGGAGTGCGTCGTAGTAGAAGATGCCCCGGCTGGCGTGCTGTCCGGACTGGCTGCGGGCTGCCACGTCATTGCGGTCAATGCGCCGGCCGACACGCCGCGTCTGGCGGATGTTGATTTTGCGTTGGATAGCCTGACGCAATTATCGGTCGCTAAACAACCAAACGGCGATGTGGTGGTGTTAAGAAAGACCTGA", "blast_result": {"qseqid": "NZ_AOXI01000005.1_72|1457206149", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 99.85700000000001, "length": 699, "mismatch": 1, "gapopen": 0, "qstart": 1, "qend": 699, "sstart": 603095, "send": 603793, "evalue": 0.0, "bitscore": 1286.0, "qlen": 699, "slen": 699860, "sseq": "ATGAAATCAATCAAATCATTAATGCCTGAGGAGGCTCACGTGCAGTGTAAAGGTTTTCTGTTTGATCTGGATGGAACGTTGGTTGACTCATTACCTGCCGTCGAACGCGCGTGGTGTAGCTGGGCCGATCGTTTTAACCTTGCTCATGATGAGGTGCTGGGCTTTATTCATGGCAAACAGGCGATCACCTCGTTGCGGCATTTTATGGCGGGTAAATCGGAGGCGGAAATTGCCGCTGAGTTTACGCGCCTGGAGCAAATAGAAGCCACTGAAACCGCAGGGATCACCGCGTTGCCGGGGGCAGTCGATTTACTCAATCACCTGAATAAAGCGGGCATTCCGTGGGCTATCGTCACCTCCGGTTCAATGCCGGTCGCGCGTGCGCGCCATCAGGTCGCGGGCCTTCCAGCGCCAGAGGTGTTTGTCACCGCCGAACGAGTCAAACGCGGCAAACCGGAGCCGGATGCGTATTTGCTGGGCGCACAACTGCTTGGCCTGGCCCCTCAGGAGTGCGTCGTAGTAGAAGATGCCCCGGCTGGCGTGCTGTCCGGACTGGCTGCGGGCTGCCACGTCATTGCGGTCAATGCGCCGGCCGACACGCCGCGTCTGGCGGATGTTGATTTTGCGTTGGATAGCCTGACGCAATTATCGGTCGCTAAACAACCAAACGGCGATGTGGTGGTGTTAAGAAAGACCTGA", "coverage": 1.0, "is_trunc": false, "marker": "NZ_AOXI01000005.1_72", "allele": 1457206149, "is_match": true, "allele_name": 1007978530, "is_perfect": false, "has_perfect_match": false, "start_idx": 603094.0, "end_idx": 603792.0, "needs_revcomp": false, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOXE01000033.1_43": {"name": 1367997025, "seq": "ATGAAAATCGGCATCATTGGCGCAATGGAAGAAGAAGTTACGCTGCTGCGTGACAAAATTGACAACCGTCAGACGATTACGCTGGGCGGCTGCGAAATTTACACTGGCCAGTTGAACGGCACCGAAGTGGCGTTGCTGAAATCCGGTATCGGTAAAGTCGCGGCGGCGCTGGGCGCAACGTTGCTTCTGGAGCACTGCAAGCCGGACGTGATCATCAATACCGGTTCCGCAGGCGGTCTGGCGTCCACGCTGAAGGTCGGCGATATCGTCGTCTCTGACGAAGCGCGTTACCACGACGCTGATGTGACCGCTTTCGGCTATGAATACGGGCAATTACCGGGCTGTCCGGCCGGATTTAAGGCCGATGATAAGCTGATCGCCGCCGCGGAATCCTGCATCAGGGAGTTGAATCTGAACGCGGTACGCGGCCTTATTGTTAGCGGCGACGCGTTTATTAACGGTTCCGTCGGGCTGGCGAAAATCCGGCATAACTTCCCCGACGCGGTCGCCGTAGAGATGGAAGCCACCGCTATCGCCCACGTCTGCCATAACTTCAACGTGCCGTTCGTGGTGGTACGCGCTATCTCTGACGTGGCCGATCAGCAATCGCACCTCAGCTTTGACGAATTCCTCGCGGTGGCGGCGAAACAGTCGACTCTGATGGTCGAAACGCTGGTACAGAAACTGGCGCATGGCTAA", "blast_result": {"qseqid": "NZ_AOXE01000033.1_43|519852459", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 99.571, "length": 699, "mismatch": 3, "gapopen": 0, "qstart": 1, "qend": 699, "sstart": 239759, "send": 239061, "evalue": 0.0, "bitscore": 1275.0, "qlen": 699, "slen": 699860, "sseq": "ATGAAAATCGGCATCATTGGCGCAATGGAAGAAGAAGTTACGCTGCTGCGTGACAAAATTGACAACCGTCAGACGATTACGCTGGGCGGCTGCGAAATTTACACTGGCCAGTTGAACGGCACCGAAGTGGCGTTGCTGAAATCCGGTATCGGTAAAGTCGCGGCGGCGCTGGGCGCAACGTTGCTTCTGGAGCACTGCAAGCCGGACGTGATCATCAATACCGGTTCCGCAGGCGGTCTGGCGTCCACGCTGAAGGTCGGCGATATCGTCGTCTCTGACGAAGCGCGTTACCACGACGCTGATGTGACCGCTTTCGGCTATGAATACGGGCAATTACCGGGCTGTCCGGCCGGATTTAAGGCCGATGATAAGCTGATCGCCGCCGCGGAATCCTGCATCAGGGAGTTGAATCTGAACGCGGTACGCGGCCTTATTGTTAGCGGCGACGCGTTTATTAACGGTTCCGTCGGGCTGGCGAAAATCCGGCATAACTTCCCCGACGCGGTCGCCGTAGAGATGGAAGCCACCGCTATCGCCCACGTCTGCCATAACTTCAACGTGCCGTTCGTGGTGGTACGCGCTATCTCTGACGTGGCCGATCAGCAATCGCACCTCAGCTTTGACGAATTCCTCGCGGTGGCGGCGAAACAGTCGACTCTGATGGTCGAAACGCTGGTACAGAAACTGGCGCATGGCTAA", "coverage": 1.0, "is_trunc": false, "marker": "NZ_AOXE01000033.1_43", "allele": 519852459, "is_match": true, "allele_name": 1367997025, "is_perfect": false, "has_perfect_match": false, "start_idx": 239060.0, "end_idx": 239758.0, "needs_revcomp": true, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOXE01000031.1_102": {"name": 3969539340, "seq": "ATGGACCTGATCTACTTTATTATTGATTTTATTCTGCACATCGATGTGCATCTGGCGGAGCTGGTCGCGGAGTACGGCGTCTGGGTGTACGCTATTTTGTTTTTGATTCTGTTTTGTGAAACCGGCCTGGTCGTCACGCCGTTCCTGCCGGGCGACTCGCTGCTGTTTGTCGCCGGGGCGCTGGCTTCGCTGGAAACCAACGATCTCAATGTGCATGTCATGGTGGCGTTAATGCTGATCGCCGCAATTGTCGGCGATGCGGTAAATTACACGATTGGTCGACTGTTCGGCGAAAAACTGTTCAGTAATCCGAATTCGAAAATTTTCCGCCGCAGTTATCTGGATAAAACCCACCAGTTTTATGAAAAACACGGCGGTAAAACTATCATTCTCGCTCGCTTCGTGCCGATCGTCAGAACCTTTGCGCCGTTTGTGGCAGGGATGGGGCACATGTCCTATCGGCATTTTGCCGCCTATAACGTCATCGGCGCGCTGCTGTGGGTGCTGCTCTTTACCTACGCCGGTTATTTCTTCGGTACGATACCGTTGATTCAGGATAACCTTAAGCTGCTGATTGTGGGGATTATCGTGGTTTCGATATTACCTGGCGTCATTGAGATTGTCCGGCATAAGCGCGCTGCGTCGCGTGCCGCAAAATAG", "blast_result": {"qseqid": "NZ_AOXE01000031.1_102|3969539340", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 100.0, "length": 660, "mismatch": 0, "gapopen": 0, "qstart": 1, "qend": 660, "sstart": 569279, "send": 569938, "evalue": 0.0, "bitscore": 1219.0, "qlen": 660, "slen": 699860, "sseq": "ATGGACCTGATCTACTTTATTATTGATTTTATTCTGCACATCGATGTGCATCTGGCGGAGCTGGTCGCGGAGTACGGCGTCTGGGTGTACGCTATTTTGTTTTTGATTCTGTTTTGTGAAACCGGCCTGGTCGTCACGCCGTTCCTGCCGGGCGACTCGCTGCTGTTTGTCGCCGGGGCGCTGGCTTCGCTGGAAACCAACGATCTCAATGTGCATGTCATGGTGGCGTTAATGCTGATCGCCGCAATTGTCGGCGATGCGGTAAATTACACGATTGGTCGACTGTTCGGCGAAAAACTGTTCAGTAATCCGAATTCGAAAATTTTCCGCCGCAGTTATCTGGATAAAACCCACCAGTTTTATGAAAAACACGGCGGTAAAACTATCATTCTCGCTCGCTTCGTGCCGATCGTCAGAACCTTTGCGCCGTTTGTGGCAGGGATGGGGCACATGTCCTATCGGCATTTTGCCGCCTATAACGTCATCGGCGCGCTGCTGTGGGTGCTGCTCTTTACCTACGCCGGTTATTTCTTCGGTACGATACCGTTGATTCAGGATAACCTTAAGCTGCTGATTGTGGGGATTATCGTGGTTTCGATATTACCTGGCGTCATTGAGATTGTCCGGCATAAGCGCGCTGCGTCGCGTGCCGCAAAATAG", "coverage": 1.0, "is_trunc": false, "marker": "NZ_AOXE01000031.1_102", "allele": 3969539340, "is_match": true, "allele_name": 3969539340, "is_perfect": true, "has_perfect_match": true, "start_idx": 569278.0, "end_idx": 569937.0, "needs_revcomp": false, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOXE01000033.1_3": {"name": 2914087704, "seq": "ATGTCTGAGGCAATGATGTGGTTACTGGTTCGTGGCGTCTGGGAAACGCTGGCGATGACCTTTGTCTCCGGTTTCTTCGGTTTCGTGATTGGCCTGCCGGTTGGCGTATTGCTGTATGTTACGCGCCCGGGGCAGATTATGGAGAACGCCAGGCTGTATCGCTCCCTCTCTGCGGTGGTCAATATTTTCCGCTCGATTCCCTTTATCATCCTGTTGGTGTGGATGATTCCTTTTACCCGAATAATTGTCGGCACCTCCATTGGTTTGCAGGCCGCGATTGTACCGCTGACCGTCGGCGCCGCGCCTTTTATCGCCCGTATAGTGGAAAATGCGTTGTTAGAGATCCCTGCCGGGCTGATTGAAGCCTCGCGAGCGATGGGCGCCACGCCGCTGCAAATTGTACGTAAAATCCTTTTACCGGAAGCGCTGCCTGGTCTGGTGAATGCGGCAACCATTACACTAATCACCCTGGTCGGTTACTCCGCAATGGGCGGCGCCGTCGGCGCAGGCGGCCTCGGTCAAATCGGCTATCAGTACGGTTATATTGGATACAATGCTACCGTGATGAATACGGTGCTGGTATTACTTGTCGTTCTGGTTTATTTAATTCAGTTATCCGGCGATCGCATCGTCAGGGCTGTCACGCATAAGTAA", "blast_result": {"qseqid": "NZ_AOXE01000033.1_3|1075073726", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 99.235, "length": 654, "mismatch": 4, "gapopen": 1, "qstart": 1, "qend": 653, "sstart": 285319, "send": 284666, "evalue": 0.0, "bitscore": 1179.0, "qlen": 653, "slen": 699860, "sseq": "ATGTCTGAGGCAATGATGTGGTTACTGGTTCGTGGCGTCTGGGAAACGCTGGCGATGACCTTTGTCTCCGGTTTCTTCGGTTTCGTGATTGGCCTGCCGGTTGGCGTATTGCTGTATGTTACGCGCCCGGGGCAGATTATGGAGAACGCCAGGCTGTATCGCTCCCTCTCTGCGGTGGTCAATATTTTCCGCTCGATTCCCTTTATCATCCTGTTGGTGTGGATGATTCCTTTTACCCGAATAATTGTCGGCACCTCCATTGGTTTGCAGGCCGCGATTGTACCGCTGACCGTCGGCGCCGCGCCTTTTATCGCCCGTATAGTGGAAAATGCGTTGTTAGAGATCCCTGCCGGGCTGATTGAAGCCTCGCGAGCGATGGGCGCCACGCCGCTGCAAATTGTACGTAAAATCCTTTTACCGGAAGCGCTGCCTGGTCTGGTGAATGCGGCAACCATTACACTAATCACCCTGGTCGGTTACTCCGCAATGGGCGGCGCCGTCGGCGCAGGCGGCCTCGGTCAAATCGGCTATCAGTACGGTTATATTGGATACAATGCTACCGTGATGAATACGGTGCTGGTATTACTTGTCGTTCTGGTTTATTTAATTCAGTTATCCGGCGATCGCATCGTCAGGGCTGTCACGCATAAGTAA", "coverage": 1.001531393568147, "is_trunc": false, "marker": "NZ_AOXE01000033.1_3", "allele": 1075073726, "is_match": true, "allele_name": 2914087704, "is_perfect": false, "has_perfect_match": false, "start_idx": 284665.0, "end_idx": 285318.0, "needs_revcomp": true, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOXE01000033.1_19": {"name": 1301843222, "seq": "ATGATCGAATTTGTTTATCCACACACCCATTTAGTGGCGGGTGTGGATGAAGTGGGCCGTGGCCCGCTGGTGGGCGCCGTAGTGACCGCCGCCGTGATCCTCGATCCGGCGCGTCCGATCGTCGGTCTGAATGATTCCAAAAAATTGTCTGAAAAGCGTCGTCTGTCATTGTATGACGAGATTAAAGAAAAGGCGTTAAGCTGGAGTCTGGGACGCGCGGAAGCGCATGAAATTGATGAGCTGAATATTTTGCACGCCACCATGCTCGCCATGCAGCGCGCTGTCGCTGGTCTGCATATTGCGCCAGAATATGTGCTGATCGACGGCAATCGCTGTCCGGAGCTGCCTGTGCCGTCAATGGCCGTGGTGAAAGGCGACAGCCGCGTGGCGGAGATTAGCGCGGCGTCTATTCTGGCGAAAGTCACCCGCGACGCAGAAATGGCGGCGCTGGATATCGTTTTTCCTCAGTATGGCTTTGCGCAGCACAAAGGCTATCCAACCGCTTTTCATCTGGAAAAGTTGGCCCAGTATGGCGCGACGGCGCACCACCGACGCAGTTTTGCGCCTGTTAAACGCGCTCTGGGACTTGTGTCCTGA", "blast_result": {"qseqid": "NZ_AOXE01000033.1_19|320317613", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 99.833, "length": 598, "mismatch": 0, "gapopen": 1, "qstart": 1, "qend": 598, "sstart": 265801, "send": 266397, "evalue": 0.0, "bitscore": 1098.0, "qlen": 598, "slen": 699860, "sseq": "ATGATCGAATTTGTTTATCCACACACCCATTTAGTGGCGGGTGTGGATGAAGTGGGCCGTGGCCCGCTGGTGGGCGCCGTAGTGACCGCCGCCGTGATCCTCGATCCGGCGCGTCCGATCGTCGGTCTGAATGATTCCAAAAAATTGTCTGAAAAGCGTCGTCTGTCATTGTATGACGAGATTAAAGAAAAGGCGTTAAGC-TGGAGTCTGGGACGCGCGGAAGCGCATGAAATTGATGAGCTGAATATTTTGCACGCCACCATGCTCGCCATGCAGCGCGCTGTCGCTGGTCTGCATATTGCGCCAGAATATGTGCTGATCGACGGCAATCGCTGTCCGGAGCTGCCTGTGCCGTCAATGGCCGTGGTGAAAGGCGACAGCCGCGTGGCGGAGATTAGCGCGGCGTCTATTCTGGCGAAAGTCACCCGCGACGCAGAAATGGCGGCGCTGGATATCGTTTTTCCTCAGTATGGCTTTGCGCAGCACAAAGGCTATCCAACCGCTTTTCATCTGGAAAAGTTGGCCCAGTATGGCGCGACGGCGCACCACCGACGCAGTTTTGCGCCTGTTAAACGCGCTCTGGGACTTGTGTCCTGA", "coverage": 1.0, "is_trunc": false, "marker": "NZ_AOXE01000033.1_19", "allele": 320317613, "is_match": true, "allele_name": 1301843222, "is_perfect": false, "has_perfect_match": false, "start_idx": 265800.0, "end_idx": 266396.0, "needs_revcomp": false, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOXE01000059.1_133": {"name": 490843778, "seq": "ATGAATACTTTACGCATTGGCCTGGTTTCCATTTCTGACCGTGCTTCCAGCGGCGTTTACCAGGATAAAGGTATCCCGGCCCTTGAAGAGTGGCTGGCATCTGCCCTTACCACCCCTTTTGAGCTGCAAACGCGACTGATCCCGGATGAACAGGCGATCATCGAACAGACCTTATGTGAACTGGTTGATGAGATGAGCTGTCATCTGGTGCTGACCACTGGCGGTACCGGTCCGGCACGTCGCGACGTCACGCCGGACGCGACCCTTGCCATCGCCGACCGTGAAATGCCTGGTTTTGGCGAACAGATGCGCCAGATCAGCCTGCGCTTTGTGCCGACCGCCATTCTTTCCCGCCAGGTGGGCGTTATCCGTAAACAGGCGTTAATTCTTAATCTGCCTGGACAGCCAAAATCGATCAAAGAAACGCTGGAAGGCGTAAAAGCGGACGATGGCAGCGTTAGCGTGCCGGGCATTTTTGCGAGCGTGCCGTATTGCATACAGCTGCTTGACGGGCCGTATGTCGAAACCGCGCCGGAAGTGGTTGCCGCTTTCCGTCCAAAGAGCGCCAGACGTGAGAATATGTCGTCCTGA", "blast_result": {"qseqid": "NZ_AOXE01000059.1_133|2359459701", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 99.662, "length": 591, "mismatch": 2, "gapopen": 0, "qstart": 1, "qend": 591, "sstart": 8729, "send": 9319, "evalue": 0.0, "bitscore": 1081.0, "qlen": 591, "slen": 699860, "sseq": "ATGAATACTTTACGCATTGGCCTGGTTTCCATTTCTGACCGTGCTTCCAGCGGCGTTTACCAGGATAAAGGTATCCCGGCCCTTGAAGAGTGGCTGGCATCTGCCCTTACCACCCCTTTTGAGCTGCAAACGCGACTGATCCCGGATGAACAGGCGATCATCGAACAGACCTTATGTGAACTGGTTGATGAGATGAGCTGTCATCTGGTGCTGACCACTGGCGGTACCGGTCCGGCACGTCGCGACGTCACGCCGGACGCGACCCTTGCCATCGCCGACCGTGAAATGCCTGGTTTTGGCGAACAGATGCGCCAGATCAGCCTGCGCTTTGTGCCGACCGCCATTCTTTCCCGCCAGGTGGGCGTTATCCGTAAACAGGCGTTAATTCTTAATCTGCCTGGACAGCCAAAATCGATCAAAGAAACGCTGGAAGGCGTAAAAGCGGACGATGGCAGCGTTAGCGTGCCGGGCATTTTTGCGAGCGTGCCGTATTGCATACAGCTGCTTGACGGGCCGTATGTCGAAACCGCGCCGGAAGTGGTTGCCGCTTTCCGTCCAAAGAGCGCCAGACGTGAGAATATGTCGTCCTGA", "coverage": 1.0, "is_trunc": false, "marker": "NZ_AOXE01000059.1_133", "allele": 2359459701, "is_match": true, "allele_name": 490843778, "is_perfect": false, "has_perfect_match": false, "start_idx": 8728.0, "end_idx": 9318.0, "needs_revcomp": false, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOXE01000052.1_137": {"name": 1648892875, "seq": "ATGAGCGAGCAGTTAACGGACCAGGTCCTGGTTGAACGGGTCCAGAAGGGAGATCAGAAAGCCTTTAACTTACTGGTAGTGCGCTACCAGCATAAAGTGGCGAGTCTGGTTTCCCGCTATGTGCCATCGGGCGACGTTCCCGATGTCGTACAGGAATCATTTATTAAGGCCTATCGCGCGCTGGATTCTTTCCGGGGGGATAGCGCTTTTTATACCTGGTTGTATCGTATTGCGGTCAATACCGCGAAGAACTACCTGGTTGCGCAGGGGCGTCGTCCGCCTTCCAGTGATGTAGACGCGATTGAAGCAGAAAACTTTGAAAGCGGCGGCGCGCTGAAAGAAATTTCGAACCCTGAGAACTTAATGTTGTCAGAAGAACTGAGACAGATAGTTTTCCGAACTATTGAGTCCCTCCCGGAAGATTTACGTATGGCAATCACCTTACGGGAGCTGGATGGCCTGAGCTATGAAGAGATAGCGGCTATCATGGATTGCCCGGTGGGGACGGTGCGTTCACGTATCTTCCGGGCGCGGGAAGCTATTGATAATAAAGTTCAACCGCTTATCAGGCGTTGA", "blast_result": {"qseqid": "NZ_AOXE01000052.1_137|2805629274", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 99.82600000000001, "length": 576, "mismatch": 1, "gapopen": 0, "qstart": 1, "qend": 576, "sstart": 309243, "send": 309818, "evalue": 0.0, "bitscore": 1059.0, "qlen": 576, "slen": 699860, "sseq": "ATGAGCGAGCAGTTAACGGACCAGGTCCTGGTTGAACGGGTCCAGAAGGGAGATCAGAAAGCCTTTAACTTACTGGTAGTGCGCTACCAGCATAAAGTGGCGAGTCTGGTTTCCCGCTATGTGCCATCGGGCGACGTTCCCGATGTCGTACAGGAATCATTTATTAAGGCCTATCGCGCGCTGGATTCTTTCCGGGGGGATAGCGCTTTTTATACCTGGTTGTATCGTATTGCGGTCAATACCGCGAAGAACTACCTGGTTGCGCAGGGGCGTCGTCCGCCTTCCAGTGATGTAGACGCGATTGAAGCAGAAAACTTTGAAAGCGGCGGCGCGCTGAAAGAAATTTCGAACCCTGAGAACTTAATGTTGTCAGAAGAACTGAGACAGATAGTTTTCCGAACTATTGAGTCCCTCCCGGAAGATTTACGTATGGCAATCACCTTACGGGAGCTGGATGGCCTGAGCTATGAAGAGATAGCGGCTATCATGGATTGCCCGGTGGGGACGGTGCGTTCACGTATCTTCCGGGCGCGGGAAGCTATTGATAATAAAGTTCAACCGCTTATCAGGCGTTGA", "coverage": 1.0, "is_trunc": false, "marker": "NZ_AOXE01000052.1_137", "allele": 2805629274, "is_match": true, "allele_name": 1648892875, "is_perfect": false, "has_perfect_match": false, "start_idx": 309242.0, "end_idx": 309817.0, "needs_revcomp": false, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOXE01000033.1_30": {"name": 1062106200, "seq": "GTGATTAGCGATATCAGAAAAGATGCTGAAGTACGCATGGAAAAATGCGTTGAAGCGTTCAAAACCCAAATCAGCAAAGTGCGCACGGGTCGTGCTTCTCCCAGCCTGCTGGATGGTATTGTCGTAGAATACTATGGCACTCCGACCCCGCTGCGCCAGTTGGCAAGCGTAACGGTAGAAGACTCCCGTACCTTAAAAATTAACGTGTTTGACCGTTCTATGGGGCCAGCCGTTGAAAAAGCGATCATGGCGTCAGACCTCGGTTTGAATCCAAGCTCTGCGGGCACCGATATTCGCGTTCCGCTGCCGCCGCTGACCGAAGAACGTCGTAAAGATCTGACGAAAATTGTCCGTGGAGAAGCGGAGCAGGCGCGTGTCGCCGTACGTAACGTCCGCCGTGATGCGAACGATAAAGTAAAAGCTCTGCTGAAAGATAAAGCGATCAGTGAAGATGACGATCGTCGCTCTCAGGAAGAAGTACAGAAAATGACCGACGCGGCAATTAAGAAAGTGGATGCGGCGTTGGCAGATAAAGAAGCAGAACTGATGCAGTTCTGA", "blast_result": {"qseqid": "NZ_AOXE01000033.1_30|3262632763", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 99.28299999999999, "length": 558, "mismatch": 4, "gapopen": 0, "qstart": 1, "qend": 558, "sstart": 254023, "send": 254580, "evalue": 0.0, "bitscore": 1009.0, "qlen": 558, "slen": 699860, "sseq": "GTGATTAGCGATATCAGAAAAGATGCTGAAGTACGCATGGAAAAATGCGTTGAAGCGTTCAAAACCCAAATCAGCAAAGTGCGCACGGGTCGTGCTTCTCCCAGCCTGCTGGATGGTATTGTCGTAGAATACTATGGCACTCCGACCCCGCTGCGCCAGTTGGCAAGCGTAACGGTAGAAGACTCCCGTACCTTAAAAATTAACGTGTTTGACCGTTCTATGGGGCCAGCCGTTGAAAAAGCGATCATGGCGTCAGACCTCGGTTTGAATCCAAGCTCTGCGGGCACCGATATTCGCGTTCCGCTGCCGCCGCTGACCGAAGAACGTCGTAAAGATCTGACGAAAATTGTCCGTGGAGAAGCGGAGCAGGCGCGTGTCGCCGTACGTAACGTCCGCCGTGATGCGAACGATAAAGTAAAAGCTCTGCTGAAAGATAAAGCGATCAGTGAAGATGACGATCGTCGCTCTCAGGAAGAAGTACAGAAAATGACCGACGCGGCAATTAAGAAAGTGGATGCGGCGTTGGCAGATAAAGAAGCAGAACTGATGCAGTTCTGA", "coverage": 1.0, "is_trunc": false, "marker": "NZ_AOXE01000033.1_30", "allele": 3262632763, "is_match": true, "allele_name": 1062106200, "is_perfect": false, "has_perfect_match": false, "start_idx": 254022.0, "end_idx": 254579.0, "needs_revcomp": false, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOXE01000083.1_86": {"name": 3258707132, "seq": "ATGAAACTGATGTTCGCATCGGACATTCATGGTTCTTTACCCGCCACGGAACGCGTGCTTGAGCGGTTCGCGCAAAGCGGCGCGCGTTGGCTGGTGATATTAGGCGATGTCCTTAACCACGGGCCGCGCAATGCGCTGCCTGAAGGCTATGCGCCCGCCCAGGTTGCCGAACGCCTGAACGCGGTGGCGACGCAAATCATTGCCGTGCGCGGCAACTGCGATAGCGAAGTGGATCAGATGCTGCTGCATTTCCCGATAACTGCACCGTGGCAGCAAATATTGACGCAAGAGAGGCGGCTATTTTTAACGCATGGGCACCTCTTCGGGCCGACGAATCTGCCCGCTCTGCATACTGGCGATGTGTTGGTCTATGGTCATACGCATCTGCCGGTGGCGCAACAGCAGGAAGGACTGTATCACTTTAATCCTGGGTCAGTGAGCATCCCGAAAGGCGGGTATGCAGCAAGCTACGGTATTCTGGATGATAATGTGTTGAGCGTAATCGCACTCAATGATCAAAGTATCATTGCGCAGGTTGCAATTAACTCGTAA", "blast_result": {"qseqid": "NZ_AOXE01000083.1_86|4207330955", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 99.275, "length": 552, "mismatch": 4, "gapopen": 0, "qstart": 1, "qend": 552, "sstart": 590120, "send": 590671, "evalue": 0.0, "bitscore": 998.0, "qlen": 552, "slen": 699860, "sseq": "ATGAAACTGATGTTCGCATCGGACATTCATGGTTCTTTACCCGCCACGGAACGCGTGCTTGAGCGGTTCGCGCAAAGCGGCGCGCGTTGGCTGGTGATATTAGGCGATGTCCTTAACCACGGGCCGCGCAATGCGCTGCCTGAAGGCTATGCGCCCGCCCAGGTTGCCGAACGCCTGAACGCGGTGGCGACGCAAATCATTGCCGTGCGCGGCAACTGCGATAGCGAAGTGGATCAGATGCTGCTGCATTTCCCGATAACTGCACCGTGGCAGCAAATATTGACGCAAGAGAGGCGGCTATTTTTAACGCATGGGCACCTCTTCGGGCCGACGAATCTGCCCGCTCTGCATACTGGCGATGTGTTGGTCTATGGTCATACGCATCTGCCGGTGGCGCAACAGCAGGAAGGACTGTATCACTTTAATCCTGGGTCAGTGAGCATCCCGAAAGGCGGGTATGCAGCAAGCTACGGTATTCTGGATGATAATGTGTTGAGCGTAATCGCACTCAATGATCAAAGTATCATTGCGCAGGTTGCAATTAACTCGTAA", "coverage": 1.0, "is_trunc": false, "marker": "NZ_AOXE01000083.1_86", "allele": 4207330955, "is_match": true, "allele_name": 3258707132, "is_perfect": false, "has_perfect_match": false, "start_idx": 590119.0, "end_idx": 590670.0, "needs_revcomp": false, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOXE01000083.1_74": {"name": 3051501604, "seq": "ATGGAAATGACCAACGCGCAACGTCTGATTTTGTCTAACCAGTACAAAATGATGACGATGCTCGATCCCACCAACGCCGAGCGTTACCGTCGCTTACAAACAATTATTGAACGCGGCTACGGCCTGCAGATGCGCGAGCTGGATCGCGAGTTTGGCGAGCTGACGGAAGAGACCTGTCGTACCATCATCGATATTATGGAGATGTACCATGCGCTGCACGTCTCCTGGACCAACCTCAAAGATACGCAAGCCATCGACGAACGTCGCGTCACCTTCCTGGGGTTTGACGCCGCGACGGAAGCGCGTTACCTCGGCTATGTCCGTTTTATGGTGAATATAGAAGGACGCTACACTCACTTTGACGCCGGGACGCACGGCTTTAATGCCCAGACGCCGATGTGGGAAAAATACCAGCGGATGTTGAATGTCTGGCATGCCTGCCCGCGTCAGTACCACCTGAGCGCGAATGAAATCAATCAAATCATTAATGCCTGA", "blast_result": {"qseqid": "NZ_AOXE01000083.1_74|3051501604", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 100.0, "length": 495, "mismatch": 0, "gapopen": 0, "qstart": 1, "qend": 495, "sstart": 602629, "send": 603123, "evalue": 0.0, "bitscore": 915.0, "qlen": 495, "slen": 699860, "sseq": "ATGGAAATGACCAACGCGCAACGTCTGATTTTGTCTAACCAGTACAAAATGATGACGATGCTCGATCCCACCAACGCCGAGCGTTACCGTCGCTTACAAACAATTATTGAACGCGGCTACGGCCTGCAGATGCGCGAGCTGGATCGCGAGTTTGGCGAGCTGACGGAAGAGACCTGTCGTACCATCATCGATATTATGGAGATGTACCATGCGCTGCACGTCTCCTGGACCAACCTCAAAGATACGCAAGCCATCGACGAACGTCGCGTCACCTTCCTGGGGTTTGACGCCGCGACGGAAGCGCGTTACCTCGGCTATGTCCGTTTTATGGTGAATATAGAAGGACGCTACACTCACTTTGACGCCGGGACGCACGGCTTTAATGCCCAGACGCCGATGTGGGAAAAATACCAGCGGATGTTGAATGTCTGGCATGCCTGCCCGCGTCAGTACCACCTGAGCGCGAATGAAATCAATCAAATCATTAATGCCTGA", "coverage": 1.0, "is_trunc": false, "marker": "NZ_AOXE01000083.1_74", "allele": 3051501604, "is_match": true, "allele_name": 3051501604, "is_perfect": true, "has_perfect_match": true, "start_idx": 602628.0, "end_idx": 603122.0, "needs_revcomp": false, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOXE01000031.1_106": {"name": 2545200385, "seq": "ATGGTCTGGATTGATTACGCCATTATCGCGGTGATTGCTTTTTCCTGTCTGGTTAGCCTGATCCGCGGCTTTGTTCGTGAAGCGTTATCGCTGGTGACGTGGGGTTGTGCTTTCTTTGTCGCCAGTCACTACTACACTTACCTGTCTGTCTGGTTTACGGGCTTTGAAGACGAACTGGTTCGTAATGGGATTGCTATCGCGGTACTGTTTATCGCGACGCTTATCGTCGGCGCTATCGTGAATTTTGTGATAGGTCAGCTAGTAGAAAAGACCGGCCTGTCGGGAACTGACCGGGTGTTGGGGATCTGTTTCGGCGCACTGCGAGGCGCGCTGATTGTCGCCGCCATTCTGTTCTTCCTTGATACCTTTACCGGCTTGTCGAAAAGCGAAGACTGGAGCAAATCGCAGCTCATCCCGCAGTTCAGCTTCATCATCAGATGGTTCTTTGACTATCTGCAAAGCTCGTCGAGTTTCTTGCCCAGGACGTAA", "blast_result": {"qseqid": "NZ_AOXE01000031.1_106|2545200385", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 100.0, "length": 489, "mismatch": 0, "gapopen": 0, "qstart": 1, "qend": 489, "sstart": 573313, "send": 573801, "evalue": 0.0, "bitscore": 904.0, "qlen": 489, "slen": 699860, "sseq": "ATGGTCTGGATTGATTACGCCATTATCGCGGTGATTGCTTTTTCCTGTCTGGTTAGCCTGATCCGCGGCTTTGTTCGTGAAGCGTTATCGCTGGTGACGTGGGGTTGTGCTTTCTTTGTCGCCAGTCACTACTACACTTACCTGTCTGTCTGGTTTACGGGCTTTGAAGACGAACTGGTTCGTAATGGGATTGCTATCGCGGTACTGTTTATCGCGACGCTTATCGTCGGCGCTATCGTGAATTTTGTGATAGGTCAGCTAGTAGAAAAGACCGGCCTGTCGGGAACTGACCGGGTGTTGGGGATCTGTTTCGGCGCACTGCGAGGCGCGCTGATTGTCGCCGCCATTCTGTTCTTCCTTGATACCTTTACCGGCTTGTCGAAAAGCGAAGACTGGAGCAAATCGCAGCTCATCCCGCAGTTCAGCTTCATCATCAGATGGTTCTTTGACTATCTGCAAAGCTCGTCGAGTTTCTTGCCCAGGACGTAA", "coverage": 1.0, "is_trunc": false, "marker": "NZ_AOXE01000031.1_106", "allele": 2545200385, "is_match": true, "allele_name": 2545200385, "is_perfect": true, "has_perfect_match": true, "start_idx": 573312.0, "end_idx": 573800.0, "needs_revcomp": false, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOXE01000059.1_69": {"name": 1928860657, "seq": "ATGATCAGTCTGATTGCGGCGTTAGCGGTGGATCGCGTCATCGGTATGGAAAACGCCATGCCGTGGAACCTGCCTGCCGATCTCGCATGGTTTAAACGTAACACGTTAAATAAACCTGTCGTCATGGGACGTCACACCTGGGAGTCCATCGGACGCCCCTTACCGGGACGTAAAAATATTATTATCAGCAGCCAGCCGGGCACCGACGATCGCGTGCAGTGGGTGAAGTCTGTCGATGAGGCGATTGCCGCTTGCGGCGATGCGCCGGAAATTATGGTCATTGGCGGCGGGCGCGTGTACGAGCAGTTCCTGCCAAAGGCGCAGAAGCTTTATCTGACGCATATTGATGCGGAAGTCGAAGGCGATACCCATTTTCCGGATTATGAACCGGATGACTGGGAATCGGTATTCAGTGAGTTTCACGATGCCGACGCGCAGAATTCTCACAGCTATTGTTTCGAGATTCTGGAGCGTCGTTAA", "blast_result": {"qseqid": "NZ_AOXE01000059.1_69|616419627", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 99.583, "length": 480, "mismatch": 2, "gapopen": 0, "qstart": 1, "qend": 480, "sstart": 100644, "send": 101123, "evalue": 0.0, "bitscore": 876.0, "qlen": 480, "slen": 699860, "sseq": "ATGATCAGTCTGATTGCGGCGTTAGCGGTGGATCGCGTCATCGGTATGGAAAACGCCATGCCGTGGAACCTGCCTGCCGATCTCGCATGGTTTAAACGTAACACGTTAAATAAACCTGTCGTCATGGGACGTCACACCTGGGAGTCCATCGGACGCCCCTTACCGGGACGTAAAAATATTATTATCAGCAGCCAGCCGGGCACCGACGATCGCGTGCAGTGGGTGAAGTCTGTCGATGAGGCGATTGCCGCTTGCGGCGATGCGCCGGAAATTATGGTCATTGGCGGCGGGCGCGTGTACGAGCAGTTCCTGCCAAAGGCGCAGAAGCTTTATCTGACGCATATTGATGCGGAAGTCGAAGGCGATACCCATTTTCCGGATTATGAACCGGATGACTGGGAATCGGTATTCAGTGAGTTTCACGATGCCGACGCGCAGAATTCTCACAGCTATTGTTTCGAGATTCTGGAGCGTCGTTAA", "coverage": 1.0, "is_trunc": false, "marker": "NZ_AOXE01000059.1_69", "allele": 616419627, "is_match": true, "allele_name": 1928860657, "is_perfect": false, "has_perfect_match": false, "start_idx": 100643.0, "end_idx": 101122.0, "needs_revcomp": false, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOXE01000083.1_53": {"name": 2640609716, "seq": "ATGATTGACTGGCAGGATCTCCACCATAGCGAACTTACTGTTCCTCAACTTTACGCGTTACTCAAATTGCGCTGCGCGGTCTTTGTGGTAGAACAGCGCTGTCCTTACCTGGATGTGGATGGCGATGATTTAGTCGGCGACAATCGGCATATTCTGGGCTGGCATCAGGATGAGCTGGTGGCGTATGCGAGGATTCTGAAAAGTGATAACGAATCAGACCCGGTTGTCATTGGCCGGGTGATCGTCAGCGATGCCTGGCGAGGGGCGAAACTGGGCCAGCAATTAATGGCGAAAACGCTGGAATCTTGTGGGCGGCACTGGCCGGATAAGCCGCTATATCTGGGGGCGCAGGCGCATCTGCAACCTTTTTATGCGCGGTTTGGTTTTATTCCCGTCACCGATGTTTATGACGAAGACGGCATTCCGCACCGGGGAATGGCGCGGGAGGTTCATCAGGCATAA", "blast_result": {"qseqid": "NZ_AOXE01000083.1_53|1998597791", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 99.56700000000001, "length": 462, "mismatch": 2, "gapopen": 0, "qstart": 1, "qend": 462, "sstart": 627522, "send": 627983, "evalue": 0.0, "bitscore": 843.0, "qlen": 462, "slen": 699860, "sseq": "ATGATTGACTGGCAGGATCTCCACCATAGCGAACTTACTGTTCCTCAACTTTACGCGTTACTCAAATTGCGCTGCGCGGTCTTTGTGGTAGAACAGCGCTGTCCTTACCTGGATGTGGATGGCGATGATTTAGTCGGCGACAATCGGCATATTCTGGGCTGGCATCAGGATGAGCTGGTGGCGTATGCGAGGATTCTGAAAAGTGATAACGAATCAGACCCGGTTGTCATTGGCCGGGTGATCGTCAGCGATGCCTGGCGAGGGGCGAAACTGGGCCAGCAATTAATGGCGAAAACGCTGGAATCTTGTGGGCGGCACTGGCCGGATAAGCCGCTATATCTGGGGGCGCAGGCGCATCTGCAACCTTTTTATGCGCGGTTTGGTTTTATTCCCGTCACCGATGTTTATGACGAAGACGGCATTCCGCACCGGGGAATGGCGCGGGAGGTTCATCAGGCATAA", "coverage": 1.0, "is_trunc": false, "marker": "NZ_AOXE01000083.1_53", "allele": 1998597791, "is_match": true, "allele_name": 2640609716, "is_perfect": false, "has_perfect_match": false, "start_idx": 627521.0, "end_idx": 627982.0, "needs_revcomp": false, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOXE01000059.1_37": {"name": 1510445340, "seq": "ATGTTCCGGGGGGCAACGTTAGTCAATCTCGACAGTAAAGGGCGCCTGACCGTGCCGACCCGTTATCGGGAGCAACTGATCGAGAGCGCTACCGGTCAAATAGTATGTACCATTGACATCCATCACCCATGCCTGCTGCTTTACCCCCTGCCTGAATGGGAAATTATTGAGCAAAAGTTATCTCGTCTGTCGAGCATGAACCCGGTAGAACGTCGCGTACAGCGTTTACTGTTGGGCCATGCCAGTGAATGTCAGATGGATGGTGCAGGTCGATTACTGATCGCGCCAGTTCTGCGGCAACATGCCGGACTGACGAAAGAAGTGATGCTGGTTGGACAGTTCAACAAATTTGAGCTGTGGGATGAAACGACCTGGTATCAACAGGTCAAGGAAGATATCGACGCTGAACAGTCAGCTACCGAAACGTTATCGGAGCGGCTGCAGGACTTGTCTCTATAA", "blast_result": {"qseqid": "NZ_AOXE01000059.1_37|2467894309", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 99.564, "length": 459, "mismatch": 2, "gapopen": 0, "qstart": 1, "qend": 459, "sstart": 141353, "send": 141811, "evalue": 0.0, "bitscore": 837.0, "qlen": 459, "slen": 699860, "sseq": "ATGTTCCGGGGGGCAACGTTAGTCAATCTCGACAGTAAAGGGCGCCTGACCGTGCCGACCCGTTATCGGGAGCAACTGATCGAGAGCGCTACCGGTCAAATAGTATGTACCATTGACATCCATCACCCATGCCTGCTGCTTTACCCCCTGCCTGAATGGGAAATTATTGAGCAAAAGTTATCTCGTCTGTCGAGCATGAACCCGGTAGAACGTCGCGTACAGCGTTTACTGTTGGGCCATGCCAGTGAATGTCAGATGGATGGTGCAGGTCGATTACTGATCGCGCCAGTTCTGCGGCAACATGCCGGACTGACGAAAGAAGTGATGCTGGTTGGACAGTTCAACAAATTTGAGCTGTGGGATGAAACGACCTGGTATCAACAGGTCAAGGAAGATATCGACGCTGAACAGTCAGCTACCGAAACGTTATCGGAGCGGCTGCAGGACTTGTCTCTATAA", "coverage": 1.0, "is_trunc": false, "marker": "NZ_AOXE01000059.1_37", "allele": 2467894309, "is_match": true, "allele_name": 1510445340, "is_perfect": false, "has_perfect_match": false, "start_idx": 141352.0, "end_idx": 141810.0, "needs_revcomp": false, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOXE01000059.1_94": {"name": 1175502179, "seq": "ATGTCTAAATCCGTACAGAGCAACAGCGCGATCCTCGTTCACTTCACCCTGAAACTGGATGATGGCTCAACGGCGGAATCTACCCGCAATAACGGCAAGCCAGCCCTGTTCCGTCTTGGCGATACCTCGCTTTCCGAAGGTCTGGAGCAGCAGCTTCTGGGGTTGAAAGAAGGGGAAAAGAAAGCGTTTTCGCTGGAGCCTGACGCCGCGTTTGGCGTCCCCAGTCCGGACTTGATCCAGTATTTCTCGCGCCGTGAGTTTATGGCGGCGGGCGAACCGGAAGTCGGGGCGATTATGCTTTTTACCGCAATGGATGGCAGCGAAATGCCTGGCGTGATTCGCGAAATCAACGGCGACTCGATTACCGTTGATTTTAACCATCCGCTGGCCGGGCATACCGTTCACTTTGATATTGAAGTGCTGGAAATCGATCCGGCGCTGGAGGCATAA", "blast_result": {"qseqid": "NZ_AOXE01000059.1_94|1542171267", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 99.77799999999999, "length": 450, "mismatch": 1, "gapopen": 0, "qstart": 1, "qend": 450, "sstart": 57341, "send": 57790, "evalue": 0.0, "bitscore": 826.0, "qlen": 450, "slen": 699860, "sseq": "ATGTCTAAATCCGTACAGAGCAACAGCGCGATCCTCGTTCACTTCACCCTGAAACTGGATGATGGCTCAACGGCGGAATCTACCCGCAATAACGGCAAGCCAGCCCTGTTCCGTCTTGGCGATACCTCGCTTTCCGAAGGTCTGGAGCAGCAGCTTCTGGGGTTGAAAGAAGGGGAAAAGAAAGCGTTTTCGCTGGAGCCTGACGCCGCGTTTGGCGTCCCCAGTCCGGACTTGATCCAGTATTTCTCGCGCCGTGAGTTTATGGCGGCGGGCGAACCGGAAGTCGGGGCGATTATGCTTTTTACCGCAATGGATGGCAGCGAAATGCCTGGCGTGATTCGCGAAATCAACGGCGACTCGATTACCGTTGATTTTAACCATCCGCTGGCCGGGCATACCGTTCACTTTGATATTGAAGTGCTGGAAATCGATCCGGCGCTGGAGGCATAA", "coverage": 1.0, "is_trunc": false, "marker": "NZ_AOXE01000059.1_94", "allele": 1542171267, "is_match": true, "allele_name": 1175502179, "is_perfect": false, "has_perfect_match": false, "start_idx": 57340.0, "end_idx": 57789.0, "needs_revcomp": false, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOXE01000059.1_9": {"name": 2978539204, "seq": "ATGGAAAAACAACGCGGTTTCACGCTTATCGAACTGATGGTCGTTATTGGCATCATCGCCATTTTAAGCGCCATTGGCATTCCGGCTTACCAGAACTATCTGCGTAAAGCGGCGCTGACGGATATGTTGCAAACATTTGTCCCCTACCGTACTGCCGTCGAACTCTGCGCTCTGGAACATGGTGGGACGAGCACATGCGATGCGGGCGTCAACGGTATCCCCTCGCCCGTCATCACCCGTTATGTTTCGGGCATGAGCGTGGAAAAAGGCGTCATCACGCTTACCGGTCAGGAGAGTCTGAGCGGGCTTAGCGTCATCATGACGCCCGCCTGGGACAATGCTAACGGCATTACCGGCTGGACGCGTAACTGCAATATTCAAAGCGACAGCGCGTTACAACAGGCTTGTGAAGATGTCTTCCGTTTTGACGCCAACTAA", "blast_result": {"qseqid": "NZ_AOXE01000059.1_9|129319737", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 99.315, "length": 438, "mismatch": 3, "gapopen": 0, "qstart": 1, "qend": 438, "sstart": 171289, "send": 170852, "evalue": 0.0, "bitscore": 793.0, "qlen": 438, "slen": 699860, "sseq": "ATGGAAAAACAACGCGGTTTCACGCTTATCGAACTGATGGTCGTTATTGGCATCATCGCCATTTTAAGCGCCATTGGCATTCCGGCTTACCAGAACTATCTGCGTAAAGCGGCGCTGACGGATATGTTGCAAACATTTGTCCCCTACCGTACTGCCGTCGAACTCTGCGCTCTGGAACATGGTGGGACGAGCACATGCGATGCGGGCGTCAACGGTATCCCCTCGCCCGTCATCACCCGTTATGTTTCGGGCATGAGCGTGGAAAAAGGCGTCATCACGCTTACCGGTCAGGAGAGTCTGAGCGGGCTTAGCGTCATCATGACGCCCGCCTGGGACAATGCTAACGGCATTACCGGCTGGACGCGTAACTGCAATATTCAAAGCGACAGCGCGTTACAACAGGCTTGTGAAGATGTCTTCCGTTTTGACGCCAACTAA", "coverage": 1.0, "is_trunc": false, "marker": "NZ_AOXE01000059.1_9", "allele": 129319737, "is_match": true, "allele_name": 2978539204, "is_perfect": false, "has_perfect_match": false, "start_idx": 170851.0, "end_idx": 171288.0, "needs_revcomp": true, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOYI01000008.1_9": {"name": 3646345463, "seq": "ATGATTGCCATCTCCCGGACGGTCTCCATAGCCGATAATGAGCTGGAAATTACGGCCATTCGCGCGCAGGGCGCGGGTGGTCAGCACGTAAATAAGACCTCTAGCGCGATTCATTTGCGCTTTGACATTCGGGCCTCTGGCCTGCCAGAGTATTATAAACAGCGTTTGCTGACGGCCAGCCACCATCTGATAAGCGATGATGGCGTCATTATCATTAAGGCGCAGGAGTTCCGGAGCCAGGAGCTCAACCGGGAAGCGGCTATCGCCAGGCTGGTTGCCGTCATAAAAGAATTAACCGCGGAGCAGAAAAGCCGTCGCGCAACCCGTCCGACGCGTGCCTCGAAAGAGCGCCGCTTGTCCTCAAAGGCGCAAAAATCTTCTGTAAAGGCGCTTCGCGGCAAAATTCGTCGTCCACTGGATTGA", "blast_result": {"qseqid": "NZ_AOYI01000008.1_9|3646345463", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 100.0, "length": 423, "mismatch": 0, "gapopen": 0, "qstart": 1, "qend": 423, "sstart": 278816, "send": 279238, "evalue": 0.0, "bitscore": 782.0, "qlen": 423, "slen": 699860, "sseq": "ATGATTGCCATCTCCCGGACGGTCTCCATAGCCGATAATGAGCTGGAAATTACGGCCATTCGCGCGCAGGGCGCGGGTGGTCAGCACGTAAATAAGACCTCTAGCGCGATTCATTTGCGCTTTGACATTCGGGCCTCTGGCCTGCCAGAGTATTATAAACAGCGTTTGCTGACGGCCAGCCACCATCTGATAAGCGATGATGGCGTCATTATCATTAAGGCGCAGGAGTTCCGGAGCCAGGAGCTCAACCGGGAAGCGGCTATCGCCAGGCTGGTTGCCGTCATAAAAGAATTAACCGCGGAGCAGAAAAGCCGTCGCGCAACCCGTCCGACGCGTGCCTCGAAAGAGCGCCGCTTGTCCTCAAAGGCGCAAAAATCTTCTGTAAAGGCGCTTCGCGGCAAAATTCGTCGTCCACTGGATTGA", "coverage": 1.0, "is_trunc": false, "marker": "NZ_AOYI01000008.1_9", "allele": 3646345463, "is_match": true, "allele_name": 3646345463, "is_perfect": true, "has_perfect_match": true, "start_idx": 278815.0, "end_idx": 279237.0, "needs_revcomp": false, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOYL01000006.1_89": {"name": 1109678443, "seq": "ATGCTGATGGAGATAGACATCGTTCAGGCTGGCGCCGCTGTACAGGACGCTATCATCAATGATAAAGCCTTTAAAATGCAGTACGCCAAGCGCTTCTCGCGTATTAATCGGCACGCCGTAAACCGGGACATCAATGCCGGGGTTTTCCTGCGCCAGTCGGCAATACCAGTCTGCATTGGTATTCGAGGCCGCTGCGCCAATGCGCCCGCGTTGCGCGCGATGCCAGTCGACCAGCACCCTCACGTCCAGTTCAGGACGCTGCCGTTTAGCCGCATAGAGCGCGTCGAGTATACCTTTACCCCCATCGTCCTGTTCCAGATACAGGGCAACGATACAAATACGCTGCGTCGCGCTGGCGATTTTCTCCAGCAGTGTCTCCCGAAAAGTAGCAGGAGTATAAAAGAAATCTACATCATCAACTGA", "blast_result": {"qseqid": "NZ_AOYL01000006.1_89|491087478", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 99.764, "length": 423, "mismatch": 1, "gapopen": 0, "qstart": 1, "qend": 423, "sstart": 296106, "send": 296528, "evalue": 0.0, "bitscore": 776.0, "qlen": 423, "slen": 699860, "sseq": "ATGCTGATGGAGATAGACATCGTTCAGGCTGGCGCCGCTGTACAGGACGCTATCATCAATGATAAAGCCTTTAAAATGCAGTACGCCAAGCGCTTCTCGCGTATTAATCGGCACGCCGTAAACCGGGACATCAATGCCGGGGTTTTCCTGCGCCAGTCGGCAATACCAGTCTGCATTGGTATTCGAGGCCGCTGCGCCAATGCGCCCGCGTTGCGCGCGATGCCAGTCGACCAGCACCCTCACGTCCAGTTCAGGACGCTGCCGTTTAGCCGCATAGAGCGCGTCGAGTATACCTTTACCCCCATCGTCCTGTTCCAGATACAGGGCAACGATACAAATACGCTGCGTCGCGCTGGCGATTTTCTCCAGCAGTGTCTCCCGAAAAGTAGCAGGAGTATAAAAGAAATCTACATCATCAACTGA", "coverage": 1.0, "is_trunc": false, "marker": "NZ_AOYL01000006.1_89", "allele": 491087478, "is_match": true, "allele_name": 1109678443, "is_perfect": false, "has_perfect_match": false, "start_idx": 296105.0, "end_idx": 296527.0, "needs_revcomp": false, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOXE01000033.1_14": {"name": 1672513023, "seq": "ATGCTGGGATTAAAACAGGTTCATCACATCGCGATCATTGCGACAGACTATGCGGTGAGCAAGGCGTTTTATTGCGATATTCTGGGGTTCGATCTGCTAAGCGAAGCCTGGCGGGAAGAGCGTGACTCGTGGAAGGGCGATTTGGCGCTAAACGGGCAGTATGTGATTGAGCTTTTCTCTTTTCCCTTCCCTCCGGCGCGTCCAAGCCGACCTGAAGCCTGCGGTCTGCGCCATCTGGCTTTCAGCGTGGAAAATGTGGAAAACGCCGTTGCGCATCTGGAAAAGCATCAGGTTAAGTGCGAACCGATACGCATCGATCCGTATACCGGGAAGCGCTTTACTTTTTTCAACGATCCGGACGGTTTACCGCTTGAGCTGTATGAGCAGTAA", "blast_result": {"qseqid": "NZ_AOXE01000033.1_14|1398671007", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 99.744, "length": 390, "mismatch": 0, "gapopen": 1, "qstart": 1, "qend": 389, "sstart": 275801, "send": 276190, "evalue": 0.0, "bitscore": 713.0, "qlen": 389, "slen": 699860, "sseq": "ATGCTGGGATTAAAACAGGTTCATCACATCGCGATCATTGCGACAGACTATGCGGTGAGCAAGGCGTTTTATTGCGATATTCTGGGGTTCGATCTGCTAAGCGAAGCCTGGCGGGAAGAGCGTGACTCGTGGAAGGGCGATTTGGCGCTAAACGGGCAGTATGTGATTGAGCTTTTCTCTTTTCCCTTCCCTCCGGCGCGTCCAAGCCGACCTGAAGCCTGCGGTCTGCGCCATCTGGCTTTCAGCGTGGAAAATGTGGAAAACGCCGTTGCGCATCTGGAAAAGCATCAGGTTAAGTGCGAACCGATACGCATCGATCCGTATACCGGGAAGCGCTTTACTTTTTTCAACGATCCGGACGGTTTACCGCTTGAGCTGTATGAGCAGTAA", "coverage": 1.0025706940874035, "is_trunc": false, "marker": "NZ_AOXE01000033.1_14", "allele": 1398671007, "is_match": true, "allele_name": 1672513023, "is_perfect": false, "has_perfect_match": false, "start_idx": 275800.0, "end_idx": 276189.0, "needs_revcomp": false, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOXE01000052.1_141": {"name": 2084418558, "seq": "ATGATTACAGGTATCCAGATTACTAAAGCCGCTAACGACGACCTGCTGAATTCCTTCTGGCTGCTGGACAGCGAAAAAGGCGAAGCGCGCTGCATCGTTGCAAAATCCGGCTTTGCTGAAGATGAAGTTGTGGCTGTCAGCAAACTGGGCGAGATTGAATACCGTGAAATTCCGATGGAAGTTAAACCGGAAGTACGCGTTGAAGGCGGTCAGCATCTGAACGTTAACGTTCTGCGTCGTGAAACTCTGGAAGACGCGGTTAAGCATCCGGAAAAATACCCGCAGCTGACTATTCGTGTTTCTGGTTATGCGGTGCGTTTTAACTCCCTGACGCCGGAACAGCAGCGCGACGTTATCGCTCGTACCTTTACCGAAAGCCTGTAA", "blast_result": {"qseqid": "NZ_AOXE01000052.1_141|2084418558", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 100.0, "length": 384, "mismatch": 0, "gapopen": 0, "qstart": 1, "qend": 384, "sstart": 302960, "send": 303343, "evalue": 0.0, "bitscore": 710.0, "qlen": 384, "slen": 699860, "sseq": "ATGATTACAGGTATCCAGATTACTAAAGCCGCTAACGACGACCTGCTGAATTCCTTCTGGCTGCTGGACAGCGAAAAAGGCGAAGCGCGCTGCATCGTTGCAAAATCCGGCTTTGCTGAAGATGAAGTTGTGGCTGTCAGCAAACTGGGCGAGATTGAATACCGTGAAATTCCGATGGAAGTTAAACCGGAAGTACGCGTTGAAGGCGGTCAGCATCTGAACGTTAACGTTCTGCGTCGTGAAACTCTGGAAGACGCGGTTAAGCATCCGGAAAAATACCCGCAGCTGACTATTCGTGTTTCTGGTTATGCGGTGCGTTTTAACTCCCTGACGCCGGAACAGCAGCGCGACGTTATCGCTCGTACCTTTACCGAAAGCCTGTAA", "coverage": 1.0, "is_trunc": false, "marker": "NZ_AOXE01000052.1_141", "allele": 2084418558, "is_match": true, "allele_name": 2084418558, "is_perfect": true, "has_perfect_match": true, "start_idx": 302959.0, "end_idx": 303342.0, "needs_revcomp": false, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOXE01000033.1_38": {"name": 1314942441, "seq": "ATGTATGACAATCTAAAAAGTCTGGGCATTACCAATCCTGAGGAAATCGATCGTTACAGCCTGCGGCAAGAAGCCAATAACGATATCCTGAAAATCTATTTTCAAAAGGATAGAGGTGAATTCTTTGCTAAAAGCGTGAAGTTTAAGTATCCACGCCAGCGTAAAACGGTGGTGGCTGATGGCATCGGTCAGGGTTATAAAGAAGTACAGGAGATTAGCCCTAACCTACGCTATGTGATTGACGAGCTGGACCAAATCTGCCAGCGCGACCGCTCAGAACTCGATCTCAAACGTAAGATCCTCGACGACTTGCGCCATCTGGAAAGCGTCGTCGCGAATAAGATCAGTGAAATCGAAGCCGATCTGGACAAGCTTACCCGTAAGTAA", "blast_result": {"qseqid": "NZ_AOXE01000033.1_38|1182368253", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 99.742, "length": 387, "mismatch": 1, "gapopen": 0, "qstart": 1, "qend": 387, "sstart": 244703, "send": 244317, "evalue": 0.0, "bitscore": 710.0, "qlen": 387, "slen": 699860, "sseq": "ATGTATGACAATCTAAAAAGTCTGGGCATTACCAATCCTGAGGAAATCGATCGTTACAGCCTGCGGCAAGAAGCCAATAACGATATCCTGAAAATCTATTTTCAAAAGGATAGAGGTGAATTCTTTGCTAAAAGCGTGAAGTTTAAGTATCCACGCCAGCGTAAAACGGTGGTGGCTGATGGCATCGGTCAGGGTTATAAAGAAGTACAGGAGATTAGCCCTAACCTACGCTATGTGATTGACGAGCTGGACCAAATCTGCCAGCGCGACCGCTCAGAACTCGATCTCAAACGTAAGATCCTCGACGACTTGCGCCATCTGGAAAGCGTCGTCGCGAATAAGATCAGTGAAATCGAAGCCGATCTGGACAAGCTTACCCGTAAGTAA", "coverage": 1.0, "is_trunc": false, "marker": "NZ_AOXE01000033.1_38", "allele": 1182368253, "is_match": true, "allele_name": 1314942441, "is_perfect": false, "has_perfect_match": false, "start_idx": 244316.0, "end_idx": 244702.0, "needs_revcomp": true, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOXE01000059.1_67": {"name": 625241463, "seq": "ATGATCAATTCGCCCAGAGTGTGTATTCAGGTGCAAAGCGTCTACATTGAGGCGCAATCCTCACCTGACGATGAACGTTACGTTTTTGCCTATACCGTAACCATCCGCAATCTGGGTCGGGCGCCAGTGCAGCTATTGGGCCGCTACTGGCTGATTACCAATGGTCATGGCCGTGAAACTGAAGTCCAGGGCAAAGGTGTGGTTGGCGTCCAGCCGCGCATTGCGCCTGGCGAAGAGTATCAGTACACCGGCGGCGCGGTAATTGAAACGCCGCTGGGCACCATGCAGGGTCATTACGAAATGATCGATGAAAATGGCGACGCCTTTACCATCGACATTCCCGTGTTTCGACTCGCCGTCCCTACACTCATTCACTAA", "blast_result": {"qseqid": "NZ_AOXE01000059.1_67|2318122041", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 98.94200000000001, "length": 378, "mismatch": 4, "gapopen": 0, "qstart": 1, "qend": 378, "sstart": 102455, "send": 102078, "evalue": 0.0, "bitscore": 676.0, "qlen": 378, "slen": 699860, "sseq": "ATGATCAATTCGCCCAGAGTGTGTATTCAGGTGCAAAGCGTCTACATTGAGGCGCAATCCTCACCTGACGATGAACGTTACGTTTTTGCCTATACCGTAACCATCCGCAATCTGGGTCGGGCGCCAGTGCAGCTATTGGGCCGCTACTGGCTGATTACCAATGGTCATGGCCGTGAAACTGAAGTCCAGGGCAAAGGTGTGGTTGGCGTCCAGCCGCGCATTGCGCCTGGCGAAGAGTATCAGTACACCGGCGGCGCGGTAATTGAAACGCCGCTGGGCACCATGCAGGGTCATTACGAAATGATCGATGAAAATGGCGACGCCTTTACCATCGACATTCCCGTGTTTCGACTCGCCGTCCCTACACTCATTCACTAA", "coverage": 1.0, "is_trunc": false, "marker": "NZ_AOXE01000059.1_67", "allele": 2318122041, "is_match": true, "allele_name": 625241463, "is_perfect": false, "has_perfect_match": false, "start_idx": 102077.0, "end_idx": 102454.0, "needs_revcomp": true, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOXE01000059.1_35": {"name": 1052128508, "seq": "ATGATCAGCAGAGTGACAGAAGCCCTAAGCAAAGTTAAGGGATCGATAGGAAGCAACGAGCGCCATGCCTTGCCTGGCGTGATCGGTGACGATCTTTTGCGGTTCGGGAAGCTGCCACTCTGCTTGTTCATTTGCATCATTTTAACGGCGGTGACGGTGGTCACGACGGCGCACCATACTCGTTTACTCACCGCTCAGCGTGAACAACTGGTTCTGGAGCGCGATGCATTGGACATTGAATGGCGCAACCTGATCCTTGAAGAAAATGCGCTCGGCGATCACAGCCGGGTAGAGCGGATCGCAACGGAAAAGCTGCAAATGCAGCATGTTGATCCGTCCCAAGAAAATATCGTAGTGCAAAAATAA", "blast_result": {"qseqid": "NZ_AOXE01000059.1_35|3353355135", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 99.454, "length": 366, "mismatch": 2, "gapopen": 0, "qstart": 1, "qend": 366, "sstart": 142751, "send": 143116, "evalue": 0.0, "bitscore": 665.0, "qlen": 366, "slen": 699860, "sseq": "ATGATCAGCAGAGTGACAGAAGCCCTAAGCAAAGTTAAGGGATCGATAGGAAGCAACGAGCGCCATGCCTTGCCTGGCGTGATCGGTGACGATCTTTTGCGGTTCGGGAAGCTGCCACTCTGCTTGTTCATTTGCATCATTTTAACGGCGGTGACGGTGGTCACGACGGCGCACCATACTCGTTTACTCACCGCTCAGCGTGAACAACTGGTTCTGGAGCGCGATGCATTGGACATTGAATGGCGCAACCTGATCCTTGAAGAAAATGCGCTCGGCGATCACAGCCGGGTAGAGCGGATCGCAACGGAAAAGCTGCAAATGCAGCATGTTGATCCGTCCCAAGAAAATATCGTAGTGCAAAAATAA", "coverage": 1.0, "is_trunc": false, "marker": "NZ_AOXE01000059.1_35", "allele": 3353355135, "is_match": true, "allele_name": 1052128508, "is_perfect": false, "has_perfect_match": false, "start_idx": 142750.0, "end_idx": 143115.0, "needs_revcomp": false, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOXE01000052.1_36": {"name": 469721942, "seq": "ATGATTACCCTCTATGGCATTAAGAATTGCGACACGATCAAAAAAGCGCGCCGTTGGCTGGAGGAGCATGGCATTGATTATCGTTTTCACGATTACCGTGTGGATGGCATAGACCTCCCTCTTCTTAATACCTTTATTGCCGAACTCGGCTGGCAGCCTTTACTGAATACGCGCGGCACAACATGGCGCAAACTGGATGAAGGCCACCGCAGCGGGATTACCGATGCCGACTCCGCCGCTGCTCTCATGGTTGAACAGCCGGCAATCATCAAACGCCCATTGCTCTGCGCGCCCGGGAAGCCTATGCTGCTTGGTTTCAGTGAATCCCGTTATCAGCAGTTTTTTGATGAGGTGTAG", "blast_result": {"qseqid": "NZ_AOXE01000052.1_36|2528454351", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 99.44, "length": 357, "mismatch": 2, "gapopen": 0, "qstart": 1, "qend": 357, "sstart": 447202, "send": 446846, "evalue": 0.0, "bitscore": 649.0, "qlen": 357, "slen": 699860, "sseq": "ATGATTACCCTCTATGGCATTAAGAATTGCGACACGATCAAAAAAGCGCGCCGTTGGCTGGAGGAGCATGGCATTGATTATCGTTTTCACGATTACCGTGTGGATGGCATAGACCTCCCTCTTCTTAATACCTTTATTGCCGAACTCGGCTGGCAGCCTTTACTGAATACGCGCGGCACAACATGGCGCAAACTGGATGAAGGCCACCGCAGCGGGATTACCGATGCCGACTCCGCCGCTGCTCTCATGGTTGAACAGCCGGCAATCATCAAACGCCCATTGCTCTGCGCGCCCGGGAAGCCTATGCTGCTTGGTTTCAGTGAATCCCGTTATCAGCAGTTTTTTGATGAGGTGTAG", "coverage": 1.0, "is_trunc": false, "marker": "NZ_AOXE01000052.1_36", "allele": 2528454351, "is_match": true, "allele_name": 469721942, "is_perfect": false, "has_perfect_match": false, "start_idx": 446845.0, "end_idx": 447201.0, "needs_revcomp": true, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOXE01000052.1_92": {"name": 398274060, "seq": "ATGCCGAAGATTGTTATTCTGCCTCATCAGGATCTTTGTCCGGATGGCGCAGTTCTGGAAGCTGAGACCGGTGAAACCATTCTTGACGTTGCGCTGCGCAACGGCATCGAGATTGAACACGCCTGTGAGAAATCGTGCGCCTGCACCACCTGTCACTGTATTGTACGTGAAGGCTTCGACTCCTTGCCGGAAAGTTCGGAAGAAGAAGACGATATGCTGGATAAAGCGTGGGGGCTGGAGCCGGAAAGTCGACTGAGCTGCCAGGCCCGCGTTACCGACGACGATCTGGTTATCGAAATTCCACGTTACACAATCAACCATGCGCGTGAGCATTAA", "blast_result": {"qseqid": "NZ_AOXE01000052.1_92|398274060", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 100.0, "length": 336, "mismatch": 0, "gapopen": 0, "qstart": 1, "qend": 336, "sstart": 362626, "send": 362961, "evalue": 1.6899999999999992e-179, "bitscore": 621.0, "qlen": 336, "slen": 699860, "sseq": "ATGCCGAAGATTGTTATTCTGCCTCATCAGGATCTTTGTCCGGATGGCGCAGTTCTGGAAGCTGAGACCGGTGAAACCATTCTTGACGTTGCGCTGCGCAACGGCATCGAGATTGAACACGCCTGTGAGAAATCGTGCGCCTGCACCACCTGTCACTGTATTGTACGTGAAGGCTTCGACTCCTTGCCGGAAAGTTCGGAAGAAGAAGACGATATGCTGGATAAAGCGTGGGGGCTGGAGCCGGAAAGTCGACTGAGCTGCCAGGCCCGCGTTACCGACGACGATCTGGTTATCGAAATTCCACGTTACACAATCAACCATGCGCGTGAGCATTAA", "coverage": 1.0, "is_trunc": false, "marker": "NZ_AOXE01000052.1_92", "allele": 398274060, "is_match": true, "allele_name": 398274060, "is_perfect": true, "has_perfect_match": true, "start_idx": 362625.0, "end_idx": 362960.0, "needs_revcomp": false, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOXE01000052.1_23": {"name": 1638162324, "seq": "ATGAATAAAGAACGCATTATTCAGGAATTTGTGCCGGGCAAACAGGTCACGCTGGCGCATCTCATTGCGCACCCTGGTGAAGAACTGGCGAAAAAGATCGGCGTTCCCGATGCTGGCGCGATTGGCATTATGACCTTAACGCCGGGGGAAACGGCCATGATCGCTGGCGATTTAGCGATGAAGGCTGCGGATGTACACATCGGTTTTCTCGACAGATTTAGCGGCGCGCTGGTGATTTATGGCACCGTCGGCGCAGTAGAAGAAGCGCTATTACAGACGGTCAGCGGGCTGGGGCGATTATTAAACTTCACCCTGTGTGAGTTAACAAAAAGTTAA", "blast_result": {"qseqid": "NZ_AOXE01000052.1_23|1638162324", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 100.0, "length": 336, "mismatch": 0, "gapopen": 0, "qstart": 1, "qend": 336, "sstart": 465655, "send": 465990, "evalue": 1.6899999999999992e-179, "bitscore": 621.0, "qlen": 336, "slen": 699860, "sseq": "ATGAATAAAGAACGCATTATTCAGGAATTTGTGCCGGGCAAACAGGTCACGCTGGCGCATCTCATTGCGCACCCTGGTGAAGAACTGGCGAAAAAGATCGGCGTTCCCGATGCTGGCGCGATTGGCATTATGACCTTAACGCCGGGGGAAACGGCCATGATCGCTGGCGATTTAGCGATGAAGGCTGCGGATGTACACATCGGTTTTCTCGACAGATTTAGCGGCGCGCTGGTGATTTATGGCACCGTCGGCGCAGTAGAAGAAGCGCTATTACAGACGGTCAGCGGGCTGGGGCGATTATTAAACTTCACCCTGTGTGAGTTAACAAAAAGTTAA", "coverage": 1.0, "is_trunc": false, "marker": "NZ_AOXE01000052.1_23", "allele": 1638162324, "is_match": true, "allele_name": 1638162324, "is_perfect": true, "has_perfect_match": true, "start_idx": 465654.0, "end_idx": 465989.0, "needs_revcomp": false, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOXE01000052.1_115": {"name": 1528212814, "seq": "ATGAAAAAGATTGATGCGATTATTAAACCCTTCAAGCTGGACGATGTCCGTGAAGCGCTGGCCGAGGTAGGTATTACCGGTATGACGGTCACTGAAGTCAAAGGCTTTGGCCGTCAAAAAGGCCACACCGAGCTGTATCGCGGCGCGGAATATATGGTGGATTTTCTGCCGAAGGTAAAAATTGAAATCGTTGTGCCTGACGACATCGTGGATACCTGTGTTGATACCATCATTCGTACCGCGCAGACGGGGAAAATCGGCGACGGTAAGATCTTTGTCTTTGATGTCGCCCGCGTTATTCGTATCCGTACTGGCGAAGAAGACGACGCGGCTATCTGA", "blast_result": {"qseqid": "NZ_AOXE01000052.1_115|1690857727", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 99.705, "length": 339, "mismatch": 1, "gapopen": 0, "qstart": 1, "qend": 339, "sstart": 336765, "send": 337103, "evalue": 1.6999999999999992e-179, "bitscore": 621.0, "qlen": 339, "slen": 699860, "sseq": "ATGAAAAAGATTGATGCGATTATTAAACCCTTCAAGCTGGACGATGTCCGTGAAGCGCTGGCCGAGGTAGGTATTACCGGTATGACGGTCACTGAAGTCAAAGGCTTTGGCCGTCAAAAAGGCCACACCGAGCTGTATCGCGGCGCGGAATATATGGTGGATTTTCTGCCGAAGGTAAAAATTGAAATCGTTGTGCCTGACGACATCGTGGATACCTGTGTTGATACCATCATTCGTACCGCGCAGACGGGGAAAATCGGCGACGGTAAGATCTTTGTCTTTGATGTCGCCCGCGTTATTCGTATCCGTACTGGCGAAGAAGACGACGCGGCTATCTGA", "coverage": 1.0, "is_trunc": false, "marker": "NZ_AOXE01000052.1_115", "allele": 1690857727, "is_match": true, "allele_name": 1528212814, "is_perfect": false, "has_perfect_match": false, "start_idx": 336764.0, "end_idx": 337102.0, "needs_revcomp": false, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOXE01000031.1_80": {"name": 2955003506, "seq": "ATGAGTAAATGCAGTGCTGATGAAACCCCGGTTTGCTGCTGTATGGACGTTGGAACCATCATGGACAACTCCGATTGCACCGCGTCATACAGCCGCGTATTCGCTACCCGCGCAGAGGCTGAAGAGACGCTGGCGGCGTTAACCGAAAAAGCGCGTAGCGTGGAGTCTGAACCTTGCCAAATTACGCCAACCTTTACCGAGGAATCCGAAGGCGTTCGTCTGGATATTGATTTTGTTTTCGCCTGCGAAGCAGAAACGCTGATCTTCCAGCTCGGCCTGCGTTAA", "blast_result": {"qseqid": "NZ_AOXE01000031.1_80|2955003506", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 100.0, "length": 285, "mismatch": 0, "gapopen": 0, "qstart": 1, "qend": 285, "sstart": 547719, "send": 548003, "evalue": 3.18e-151, "bitscore": 527.0, "qlen": 285, "slen": 699860, "sseq": "ATGAGTAAATGCAGTGCTGATGAAACCCCGGTTTGCTGCTGTATGGACGTTGGAACCATCATGGACAACTCCGATTGCACCGCGTCATACAGCCGCGTATTCGCTACCCGCGCAGAGGCTGAAGAGACGCTGGCGGCGTTAACCGAAAAAGCGCGTAGCGTGGAGTCTGAACCTTGCCAAATTACGCCAACCTTTACCGAGGAATCCGAAGGCGTTCGTCTGGATATTGATTTTGTTTTCGCCTGCGAAGCAGAAACGCTGATCTTCCAGCTCGGCCTGCGTTAA", "coverage": 1.0, "is_trunc": false, "marker": "NZ_AOXE01000031.1_80", "allele": 2955003506, "is_match": true, "allele_name": 2955003506, "is_perfect": true, "has_perfect_match": true, "start_idx": 547718.0, "end_idx": 548002.0, "needs_revcomp": false, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOXE01000033.1_12": {"name": 2666669453, "seq": "ATGTCAATGAATGAAACGTATCAACCCATTAATTGCGATGACTACGATAGTCTTGAGCTTGCCTGCATGCATCATTTAATACTGACGCTAACGTTAAAAGATGGCGAGGTTTTGCAGGCAAAAGCGAACGATTTGATCTTACGTAAAAACGTAGAGTATCTGCTTGCCGAGGTTTCCGGCGAGTCTTGTGAACTTCGTCTCGATAAAATCGCCAGTTTCAGCCACCCGGAAATTGGTACCGTGGTAGTTAGCGAATCCTGA", "blast_result": {"qseqid": "NZ_AOXE01000033.1_12|1715120686", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 99.617, "length": 261, "mismatch": 1, "gapopen": 0, "qstart": 1, "qend": 261, "sstart": 277889, "send": 277629, "evalue": 2.9499999999999993e-136, "bitscore": 477.0, "qlen": 261, "slen": 699860, "sseq": "ATGTCAATGAATGAAACGTATCAACCCATTAATTGCGATGACTACGATAGTCTTGAGCTTGCCTGCATGCATCATTTAATACTGACGCTAACGTTAAAAGATGGCGAGGTTTTGCAGGCAAAAGCGAACGATTTGATCTTACGTAAAAACGTAGAGTATCTGCTTGCCGAGGTTTCCGGCGAGTCTTGTGAACTTCGTCTCGATAAAATCGCCAGTTTCAGCCACCCGGAAATTGGTACCGTGGTAGTTAGCGAATCCTGA", "coverage": 1.0, "is_trunc": false, "marker": "NZ_AOXE01000033.1_12", "allele": 1715120686, "is_match": true, "allele_name": 2666669453, "is_perfect": false, "has_perfect_match": false, "start_idx": 277628.0, "end_idx": 277888.0, "needs_revcomp": true, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOXE01000083.1_45": {"name": 1328452594, "seq": "ATGGAATGGTTGGTTAAGAAATCGCATTATGTCAAAAAGAGGGCGTGCCATGTTCTGGTGCTGTGCGATAGCGGCGGTTCGCTAAAAATGATCGCCGAGGCGAATTCCATGATATTACTGAGTCCCGGCGATATCCTGTCGCCTTTACAGGATGCGCAGTATTGTATTAATCGGGAAAAACACCAGACCTTAAAAATCGTTGATGCACGCTGTTATTCCTGCGACGAATGGCAGCGGTTGACGCGCAAGCCATTATGA", "blast_result": {"qseqid": "NZ_AOXE01000083.1_45|1328452594", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 100.0, "length": 258, "mismatch": 0, "gapopen": 0, "qstart": 1, "qend": 258, "sstart": 635546, "send": 635803, "evalue": 2.919999999999999e-136, "bitscore": 477.0, "qlen": 258, "slen": 699860, "sseq": "ATGGAATGGTTGGTTAAGAAATCGCATTATGTCAAAAAGAGGGCGTGCCATGTTCTGGTGCTGTGCGATAGCGGCGGTTCGCTAAAAATGATCGCCGAGGCGAATTCCATGATATTACTGAGTCCCGGCGATATCCTGTCGCCTTTACAGGATGCGCAGTATTGTATTAATCGGGAAAAACACCAGACCTTAAAAATCGTTGATGCACGCTGTTATTCCTGCGACGAATGGCAGCGGTTGACGCGCAAGCCATTATGA", "coverage": 1.0, "is_trunc": false, "marker": "NZ_AOXE01000083.1_45", "allele": 1328452594, "is_match": true, "allele_name": 1328452594, "is_perfect": true, "has_perfect_match": true, "start_idx": 635545.0, "end_idx": 635802.0, "needs_revcomp": false, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOXE01000031.1_70": {"name": 225275747, "seq": "ATGATCTATTTATGGACATTTCTTGCAATAAGTATACTTGCCGTGAGTGGCTATATCGGTCAGGTGATGGGGGCTTTTTCTGCGGTTTCTTCTTTTACGGGAATGGTTATCCTTGCCGCGCTGATTTATTTACTCAATGTATGGCTGCAGGATGGCGATGACATCGTTAGCGGATTATTGCTTTTTCTCGCACCGGCATGTGGGTTAATTATTCGCTTTATGGTGGGATACGGTAAGCGTTAG", "blast_result": {"qseqid": "NZ_AOXE01000031.1_70|225275747", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 100.0, "length": 243, "mismatch": 0, "gapopen": 0, "qstart": 1, "qend": 243, "sstart": 530773, "send": 531015, "evalue": 5.959999999999998e-128, "bitscore": 449.0, "qlen": 243, "slen": 699860, "sseq": "ATGATCTATTTATGGACATTTCTTGCAATAAGTATACTTGCCGTGAGTGGCTATATCGGTCAGGTGATGGGGGCTTTTTCTGCGGTTTCTTCTTTTACGGGAATGGTTATCCTTGCCGCGCTGATTTATTTACTCAATGTATGGCTGCAGGATGGCGATGACATCGTTAGCGGATTATTGCTTTTTCTCGCACCGGCATGTGGGTTAATTATTCGCTTTATGGTGGGATACGGTAAGCGTTAG", "coverage": 1.0, "is_trunc": false, "marker": "NZ_AOXE01000031.1_70", "allele": 225275747, "is_match": true, "allele_name": 225275747, "is_perfect": true, "has_perfect_match": true, "start_idx": 530772.0, "end_idx": 531014.0, "needs_revcomp": false, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOXE01000059.1_72": {"name": 2229984332, "seq": "ATGCAAAAACGTCTTATGACCGCACTGTTTACCGCAGCAACACTATTCACCGTCGCAGGATGCTCTTCTAACCAGGCGGTTGAAACCACGGATGGCAAAACTATTGTCACCGACGGGAAACCCGAGGTCGATAACGATACCGGTATGGTGTCTTACAAAAACGCCGCCACCGGGAAAACCGAACAGATTAACCGCGATCAGCTGAAAAATATGAGCGAGCTGGATAATTAA", "blast_result": {"qseqid": "NZ_AOXE01000059.1_72|2229984332", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 100.0, "length": 231, "mismatch": 0, "gapopen": 0, "qstart": 1, "qend": 231, "sstart": 93416, "send": 93646, "evalue": 2.639999999999999e-121, "bitscore": 427.0, "qlen": 231, "slen": 699860, "sseq": "ATGCAAAAACGTCTTATGACCGCACTGTTTACCGCAGCAACACTATTCACCGTCGCAGGATGCTCTTCTAACCAGGCGGTTGAAACCACGGATGGCAAAACTATTGTCACCGACGGGAAACCCGAGGTCGATAACGATACCGGTATGGTGTCTTACAAAAACGCCGCCACCGGGAAAACCGAACAGATTAACCGCGATCAGCTGAAAAATATGAGCGAGCTGGATAATTAA", "coverage": 1.0, "is_trunc": false, "marker": "NZ_AOXE01000059.1_72", "allele": 2229984332, "is_match": true, "allele_name": 2229984332, "is_perfect": true, "has_perfect_match": true, "start_idx": 93415.0, "end_idx": 93645.0, "needs_revcomp": false, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOXE01000033.1_11": {"name": 2353669245, "seq": "GTGGAAAAATATTGTGAGTTAGTACGCAAGCGGTATGCGGAAATCGCCAGCGGAGACTTAGGGTATGTCCCGGATGCGCTGGGTTGTGTATTGAAAGTGCTTAATGAAGTGGCGGCAGATAGCGCCCTTTCAGAGTCGGTCAGGGAAAAGGCAGCTTATGCTGCCGCGAACTTACTGGTGAGCGATTATGTCAATGAATGA", "blast_result": {"qseqid": "NZ_AOXE01000033.1_11|2353669245", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 100.0, "length": 201, "mismatch": 0, "gapopen": 0, "qstart": 1, "qend": 201, "sstart": 278076, "send": 277876, "evalue": 1.0799999999999998e-104, "bitscore": 372.0, "qlen": 201, "slen": 699860, "sseq": "GTGGAAAAATATTGTGAGTTAGTACGCAAGCGGTATGCGGAAATCGCCAGCGGAGACTTAGGGTATGTCCCGGATGCGCTGGGTTGTGTATTGAAAGTGCTTAATGAAGTGGCGGCAGATAGCGCCCTTTCAGAGTCGGTCAGGGAAAAGGCAGCTTATGCTGCCGCGAACTTACTGGTGAGCGATTATGTCAATGAATGA", "coverage": 1.0, "is_trunc": false, "marker": "NZ_AOXE01000033.1_11", "allele": 2353669245, "is_match": true, "allele_name": 2353669245, "is_perfect": true, "has_perfect_match": true, "start_idx": 277875.0, "end_idx": 278075.0, "needs_revcomp": true, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOXE01000052.1_38": {"name": 1317894045, "seq": "ATGGACTGGCTGGCAAAATATTGGTGGATTCTGGTATTGGTGTTTCTGGTAGGCGTACTGCTGAATGTGATCAAAGATCTCAAACGCATCGACCATAAGAAATTCCTTGCCAACAAACCTGAGCTGCCCCCGCATCGCGATTTTAACGATAAGTGGGACGATGAAGACGACTGGCCGAAGAAAGATCAGCCGAAAAAGTAA", "blast_result": {"qseqid": "NZ_AOXE01000052.1_38|1319443396", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 99.50200000000001, "length": 201, "mismatch": 1, "gapopen": 0, "qstart": 1, "qend": 201, "sstart": 445687, "send": 445487, "evalue": 5.039999999999999e-103, "bitscore": 366.0, "qlen": 201, "slen": 699860, "sseq": "ATGGACTGGCTGGCAAAATATTGGTGGATTCTGGTATTGGTGTTTCTGGTAGGCGTACTGCTGAATGTGATCAAAGATCTCAAACGCATCGACCATAAGAAATTCCTTGCCAACAAACCTGAGCTGCCCCCGCATCGCGATTTTAACGATAAGTGGGACGATGAAGACGACTGGCCGAAGAAAGATCAGCCGAAAAAGTAA", "coverage": 1.0, "is_trunc": false, "marker": "NZ_AOXE01000052.1_38", "allele": 1319443396, "is_match": true, "allele_name": 1317894045, "is_perfect": false, "has_perfect_match": false, "start_idx": 445486.0, "end_idx": 445686.0, "needs_revcomp": true, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOXE01000059.1_15": {"name": 3950769715, "seq": "ATGTCTGACGTGACCGTCGTAAACTGTCCGACCTGCGGTAAACCGGTCGTCTGGGGGGAAATTAGCCCCTTCCGCCCATTTTGTTCTAAACGCTGTCAGTTAATTGATTTGGGCGAATGGGCCGCCGAAGAGAAACGAATCGCCAGCAGCGGCGACCAGTCTGATAGCGACGACTGGAGCGAAGAGCGCTAA", "blast_result": {"qseqid": "NZ_AOXE01000059.1_15|71717843", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 99.479, "length": 192, "mismatch": 1, "gapopen": 0, "qstart": 1, "qend": 192, "sstart": 165592, "send": 165401, "evalue": 4.8299999999999996e-98, "bitscore": 350.0, "qlen": 192, "slen": 699860, "sseq": "ATGTCTGACGTGACCGTCGTAAACTGTCCGACCTGCGGTAAACCGGTCGTCTGGGGGGAAATTAGCCCCTTCCGCCCATTTTGTTCTAAACGCTGTCAGTTAATTGATTTGGGCGAATGGGCCGCCGAAGAGAAACGAATCGCCAGCAGCGGCGACCAGTCTGATAGCGACGACTGGAGCGAAGAGCGCTAA", "coverage": 1.0, "is_trunc": false, "marker": "NZ_AOXE01000059.1_15", "allele": 71717843, "is_match": true, "allele_name": 3950769715, "is_perfect": false, "has_perfect_match": false, "start_idx": 165400.0, "end_idx": 165591.0, "needs_revcomp": true, "trunc": false, "is_extended": false, "sseq_msa_gaps": 0, "sseq_msa_p_gaps": 0.0, "too_many_gaps": false}}, "NZ_AOXE01000073.1_98": {"name": null, "seq": null, "blast_result": {"qseqid": "NZ_AOXE01000073.1_98|1638612209", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 100.0, "length": 99, "mismatch": 0, "gapopen": 0, "qstart": 286, "qend": 384, "sstart": 280686, "send": 280588, "evalue": 1.0899999999999999e-47, "bitscore": 183.0, "qlen": 384, "slen": 699860, "sseq": "TTTATTGTCTATGGAAAACCCCCAGCTAGGCTGGGGGTTCCGGAAAGCTTTCAGCTTTAAGCCAGTTATTAAAACCCCTTTTGATTTGTTAAAACATCT", "coverage": 0.2578125, "is_trunc": false, "marker": "NZ_AOXE01000073.1_98", "allele": 1638612209, "is_match": false, "allele_name": 1207191677, "is_perfect": false, "has_perfect_match": false, "start_idx": 280587.0, "end_idx": 280970.0, "needs_revcomp": true, "trunc": false, "is_extended": true, "sseq_msa_gaps": 69, "sseq_msa_p_gaps": 0.16546762589928057, "too_many_gaps": true, "qseq_msa": "---atggtcgttgacagactgagaaccgatcttctcaacaagc---------tgataaacgcgcgtatcgatcttgccgcttatctgca----attgcgaaaagcgaaggggtatatgtcagtcagcgaaagtgacactctgcgtgacaatttttttgaactgaatcgc--------------gagctccacgatcacgctttacggcagggactgcatctcgatcaggaagagtggaa--cgcgctgcgccgtgccgaaggcgcgcttgcagccgccgccgtttgtttaatgagcggacaccatg-attgtccga---cctttattgtctatggaaaacccccagctaggctgggggttccggaaagctttcagctttaagccagttattaaaaccccttttgatttgttaaaacatct", "qseq_msa_trimmed": 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"cagggcattgaagtgctgatggacgatcgt---aaagagcgcccgggcgtgatgtttgccgatatggagctgattggtattccacatactatcgtgattggcga-------------------------tcgcaacctggataacgacgatattgagtataaataccgtcgtagcggtgaaaaatcgctgattaaaaccggcgatatcgttgattatctggtcaaggcgattaaaggctaaacgacattttgttgggattgc--------ccggcgccatccggcagatatgtaaaggcctcgcaccctgcgaggccttttattgtctatggaaaacccccagctaggctgggggttccggaaagctttcagctttaagccagttattaaaaccccttttgatttgttaaaacatct"}}, "NZ_AOXE01000072.1_60": {"name": null, "seq": null, "blast_result": {"qseqid": "NZ_AOXE01000072.1_60|3292167024", "stitle": "gi|29140506|gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome", "pident": 97.93799999999999, "length": 97, "mismatch": 2, "gapopen": 0, "qstart": 1, "qend": 97, "sstart": 444048, "send": 443952, "evalue": 4.4699999999999995e-43, "bitscore": 169.0, "qlen": 556, "slen": 699860, "sseq": "GCCCACGGGGGGCAATCACCGTCGCCACGCCGGGCGGCATTTCACGTAAACGCGATAAGATAGCCGCCTGCTCCGGCTGCGGCTCGCCGGTGGCGGG", "coverage": 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"gcccacggggggcaatcaccgtcgccacgccgggcggcatttcacgtaaacgcgataagatagccgcctgctccggctgcggctcgccgggggggggggg------------------------------gcaaatgagttaatactggcggcatggcggc--ttaagaacggagaaaaggagtgtattcaaaactcactgacgcagctgtggctgcgtcagtggcgccgactgccgcaagtagcgtatttactcggttgccataaactgagagccg-----------------------------atctggcaaggcagggagccttgcttggcctgccggattgggcgcaagcatttttggcaatgcatcagggaacaagtttatctgtctgcaataaggcgccgaatcaccggtttttacttagcgtcgggtat-gcacagttaaat----gccctaaatgaatttttacctgaatctttagcacagcgttttcctttgctttttcctccatttattgaggaggcattgaagcaggatgctgtagaaatgtcaattttgctactggccttacaatatg-----------ctcaaaaatatcccaataccgtccccgctttcgcctgttga----------------------", "qseq_msa_trimmed": 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