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annotate snv_matrix.xml @ 0:317ba2ee501d draft

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"planemo upload for repository https://github.com/phac-nml/snvphyl-galaxy commit 90a172f1fc12b9c4d73f4c924a8c0c5a559589d0"
author nml
date Tue, 27 Aug 2019 12:33:00 -0400
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children 4d3e3d7aa0c4
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317ba2ee501d "planemo upload for repository https://github.com/phac-nml/snvphyl-galaxy commit 90a172f1fc12b9c4d73f4c924a8c0c5a559589d0"
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1 <tool id="snvmatrix" name="SNV Matrix" version ="1.8.2">
317ba2ee501d "planemo upload for repository https://github.com/phac-nml/snvphyl-galaxy commit 90a172f1fc12b9c4d73f4c924a8c0c5a559589d0"
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2 <description>Create SNV matrix from Phylip file</description>
317ba2ee501d "planemo upload for repository https://github.com/phac-nml/snvphyl-galaxy commit 90a172f1fc12b9c4d73f4c924a8c0c5a559589d0"
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3 <requirements>
317ba2ee501d "planemo upload for repository https://github.com/phac-nml/snvphyl-galaxy commit 90a172f1fc12b9c4d73f4c924a8c0c5a559589d0"
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4 <requirement type="package" version="1.8.2">snvphyl-tools</requirement>
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5 </requirements>
317ba2ee501d "planemo upload for repository https://github.com/phac-nml/snvphyl-galaxy commit 90a172f1fc12b9c4d73f4c924a8c0c5a559589d0"
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6 <command detect_errors="exit_code">
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7 snv_matrix.pl $phylip
317ba2ee501d "planemo upload for repository https://github.com/phac-nml/snvphyl-galaxy commit 90a172f1fc12b9c4d73f4c924a8c0c5a559589d0"
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8 -o $out
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9 </command>
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10 <inputs>
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11 <param name="phylip" type="data" label="Phylip file" format="phylip"/>
317ba2ee501d "planemo upload for repository https://github.com/phac-nml/snvphyl-galaxy commit 90a172f1fc12b9c4d73f4c924a8c0c5a559589d0"
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12 </inputs>
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13 <outputs>
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14 <data format="tabular" name="out"/>
317ba2ee501d "planemo upload for repository https://github.com/phac-nml/snvphyl-galaxy commit 90a172f1fc12b9c4d73f4c924a8c0c5a559589d0"
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15 </outputs>
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16 <tests>
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17 <test>
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18 <param name="phylip" value="snvalign-13.phy"/>
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19 <output name="out" file="snvalign-13.phy.out"/>
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20 </test>
317ba2ee501d "planemo upload for repository https://github.com/phac-nml/snvphyl-galaxy commit 90a172f1fc12b9c4d73f4c924a8c0c5a559589d0"
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21 </tests>
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22
317ba2ee501d "planemo upload for repository https://github.com/phac-nml/snvphyl-galaxy commit 90a172f1fc12b9c4d73f4c924a8c0c5a559589d0"
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23 <help>
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24 What it does
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25 ============
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26
317ba2ee501d "planemo upload for repository https://github.com/phac-nml/snvphyl-galaxy commit 90a172f1fc12b9c4d73f4c924a8c0c5a559589d0"
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27 Create SNV matrix from Phylip file format
317ba2ee501d "planemo upload for repository https://github.com/phac-nml/snvphyl-galaxy commit 90a172f1fc12b9c4d73f4c924a8c0c5a559589d0"
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28
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29
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30 Usage
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31 =====
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32
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33 **Parameters**
317ba2ee501d "planemo upload for repository https://github.com/phac-nml/snvphyl-galaxy commit 90a172f1fc12b9c4d73f4c924a8c0c5a559589d0"
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34 - Phylip file: Phylogenetic file (.ph, .phy)
317ba2ee501d "planemo upload for repository https://github.com/phac-nml/snvphyl-galaxy commit 90a172f1fc12b9c4d73f4c924a8c0c5a559589d0"
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35
317ba2ee501d "planemo upload for repository https://github.com/phac-nml/snvphyl-galaxy commit 90a172f1fc12b9c4d73f4c924a8c0c5a559589d0"
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36 </help>
317ba2ee501d "planemo upload for repository https://github.com/phac-nml/snvphyl-galaxy commit 90a172f1fc12b9c4d73f4c924a8c0c5a559589d0"
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37 <citations>
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38 </citations>
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39 </tool>