Mercurial > repos > nml > snv_matrix
comparison snv_matrix.xml @ 0:317ba2ee501d draft
"planemo upload for repository https://github.com/phac-nml/snvphyl-galaxy commit 90a172f1fc12b9c4d73f4c924a8c0c5a559589d0"
| author | nml |
|---|---|
| date | Tue, 27 Aug 2019 12:33:00 -0400 |
| parents | |
| children | 4d3e3d7aa0c4 |
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| -1:000000000000 | 0:317ba2ee501d |
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| 1 <tool id="snvmatrix" name="SNV Matrix" version ="1.8.2"> | |
| 2 <description>Create SNV matrix from Phylip file</description> | |
| 3 <requirements> | |
| 4 <requirement type="package" version="1.8.2">snvphyl-tools</requirement> | |
| 5 </requirements> | |
| 6 <command detect_errors="exit_code"> | |
| 7 snv_matrix.pl $phylip | |
| 8 -o $out | |
| 9 </command> | |
| 10 <inputs> | |
| 11 <param name="phylip" type="data" label="Phylip file" format="phylip"/> | |
| 12 </inputs> | |
| 13 <outputs> | |
| 14 <data format="tabular" name="out"/> | |
| 15 </outputs> | |
| 16 <tests> | |
| 17 <test> | |
| 18 <param name="phylip" value="snvalign-13.phy"/> | |
| 19 <output name="out" file="snvalign-13.phy.out"/> | |
| 20 </test> | |
| 21 </tests> | |
| 22 | |
| 23 <help> | |
| 24 What it does | |
| 25 ============ | |
| 26 | |
| 27 Create SNV matrix from Phylip file format | |
| 28 | |
| 29 | |
| 30 Usage | |
| 31 ===== | |
| 32 | |
| 33 **Parameters** | |
| 34 - Phylip file: Phylogenetic file (.ph, .phy) | |
| 35 | |
| 36 </help> | |
| 37 <citations> | |
| 38 </citations> | |
| 39 </tool> |