<tool id="snvmatrix" name="SNV Matrix" version ="1.8.2">
  <description>Create SNV matrix from Phylip file</description>
  <requirements>
    <requirement type="package" version="1.8.2">snvphyl-tools</requirement>
  </requirements>
  <command detect_errors="exit_code">
	snv_matrix.pl   $phylip
	-o $out
  </command>
  <inputs>
    <param name="phylip" type="data" label="Phylip file" format="phylip"/>
  </inputs>
  <outputs>
    <data format="tabular" name="out"/>
  </outputs>
  <tests>
    <test>
      <param name="phylip" value="snvalign-13.phy"/>
      <output name="out" file="snvalign-13.phy.out"/>
    </test>
  </tests>

  <help>
What it does
============

Create SNV matrix from Phylip file format


Usage
=====

**Parameters**
  - Phylip file: Phylogenetic file (.ph, .phy)

  </help>
<citations>
</citations>
</tool>