Mercurial > repos > nml > spades

comparison spades.xml @ 22:33368fec3b70 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/spades commit 69c6e337e239e84ce8fec9cf9fb5d820136877b2
author iuc
date Tue, 23 Aug 2022 07:58:51 +0000
parents a789e163a670
children a90db5dbaaf3
comparison
equal deleted inserted replaced
21:a789e163a670 22:33368fec3b70
310 <param name="input1" value="ecoli_1K.fastq.gz"/> 310 <param name="input1" value="ecoli_1K.fastq.gz"/>
311 </conditional> 311 </conditional>
312 <param name="mode_sel" value="--careful"/> 312 <param name="mode_sel" value="--careful"/>
313 <param name="optional_output" value="cr,l"/> 313 <param name="optional_output" value="cr,l"/>
314 <output_collection name="out_cr" type="list" count="3"> 314 <output_collection name="out_cr" type="list" count="3">
315 <element name="ecoli_1K.fastq.gz_1.00.0_0.cor"> 315 <element name="ecoli_1K.fastq.gz_1.00.0_0">
316 <assert_contents> 316 <assert_contents>
317 <has_size value="130317" delta="5000"/> 317 <has_size value="130317" delta="5000"/>
318 </assert_contents> 318 </assert_contents>
319 </element> 319 </element>
320 <element name="ecoli_1K.fastq.gz_2.00.0_0.cor"> 320 <element name="ecoli_1K.fastq.gz_2.00.0_0">
321 <assert_contents> 321 <assert_contents>
322 <has_size value="130317" delta="5000"/> 322 <has_size value="130317" delta="5000"/>
323 </assert_contents> 323 </assert_contents>
324 </element> 324 </element>
325 <element name="ecoli_1K.fastq.gz__unpaired.00.0_0.cor"> 325 <element name="ecoli_1K.fastq.gz__unpaired.00.0_0">
326 <assert_contents> 326 <assert_contents>
327 <has_size value="20" delta="5"/> 327 <has_size value="20" delta="5"/>
328 </assert_contents> 328 </assert_contents>
329 </element> 329 </element>
330 </output_collection> 330 </output_collection>
342 <param name="input1" value="ecoli_1K.fastq.gz"/> 342 <param name="input1" value="ecoli_1K.fastq.gz"/>
343 </conditional> 343 </conditional>
344 <param name="mode_sel" value="--careful,--sc"/> 344 <param name="mode_sel" value="--careful,--sc"/>
345 <param name="optional_output" value="cr,l"/> 345 <param name="optional_output" value="cr,l"/>
346 <output_collection name="out_cr" type="list" count="3"> 346 <output_collection name="out_cr" type="list" count="3">
347 <element name="ecoli_1K.fastq.gz_1.00.0_0.cor"> 347 <element name="ecoli_1K.fastq.gz_1.00.0_0">
348 <assert_contents> 348 <assert_contents>
349 <has_size value="130317" delta="5000"/> 349 <has_size value="130317" delta="5000"/>
350 </assert_contents> 350 </assert_contents>
351 </element> 351 </element>
352 <element name="ecoli_1K.fastq.gz_2.00.0_0.cor"> 352 <element name="ecoli_1K.fastq.gz_2.00.0_0">
353 <assert_contents> 353 <assert_contents>
354 <has_size value="130317" delta="5000"/> 354 <has_size value="130317" delta="5000"/>
355 </assert_contents> 355 </assert_contents>
356 </element> 356 </element>
357 <element name="ecoli_1K.fastq.gz__unpaired.00.0_0.cor"> 357 <element name="ecoli_1K.fastq.gz__unpaired.00.0_0">
358 <assert_contents> 358 <assert_contents>
359 <has_size value="20" delta="5"/> 359 <has_size value="20" delta="5"/>
360 </assert_contents> 360 </assert_contents>
361 </element> 361 </element>
362 </output_collection> 362 </output_collection>
406 <param name="sPaired" value="paired_interlaced"/> 406 <param name="sPaired" value="paired_interlaced"/>
407 <param name="input1" value="ecoli_1K.fastq.gz"/> 407 <param name="input1" value="ecoli_1K.fastq.gz"/>
408 </conditional> 408 </conditional>
409 <param name="optional_output" value="cr,l"/> 409 <param name="optional_output" value="cr,l"/>
410 <output_collection name="out_cr" type="list" count="3"> 410 <output_collection name="out_cr" type="list" count="3">
411 <element name="ecoli_1K.fastq.gz_1.00.0_0.cor"> 411 <element name="ecoli_1K.fastq.gz_1.00.0_0">
412 <assert_contents> 412 <assert_contents>
413 <has_size value="130317" delta="5000"/> 413 <has_size value="130317" delta="5000"/>
414 </assert_contents> 414 </assert_contents>
415 </element> 415 </element>
416 <element name="ecoli_1K.fastq.gz_2.00.0_0.cor"> 416 <element name="ecoli_1K.fastq.gz_2.00.0_0">
417 <assert_contents> 417 <assert_contents>
418 <has_size value="130317" delta="5000"/> 418 <has_size value="130317" delta="5000"/>
419 </assert_contents> 419 </assert_contents>
420 </element> 420 </element>
421 <element name="ecoli_1K.fastq.gz__unpaired.00.0_0.cor"> 421 <element name="ecoli_1K.fastq.gz__unpaired.00.0_0">
422 <assert_contents> 422 <assert_contents>
423 <has_size value="20" delta="5"/> 423 <has_size value="20" delta="5"/>
424 </assert_contents> 424 </assert_contents>
425 </element> 425 </element>
426 </output_collection> 426 </output_collection>
438 <param name="input1" value="ecoli_1K.fastq.gz"/> 438 <param name="input1" value="ecoli_1K.fastq.gz"/>
439 </conditional> 439 </conditional>
440 <param name="mode_sel" value="--sc"/> 440 <param name="mode_sel" value="--sc"/>
441 <param name="optional_output" value="cr,l"/> 441 <param name="optional_output" value="cr,l"/>
442 <output_collection name="out_cr" type="list" count="3"> 442 <output_collection name="out_cr" type="list" count="3">
443 <element name="ecoli_1K.fastq.gz_1.00.0_0.cor"> 443 <element name="ecoli_1K.fastq.gz_1.00.0_0">
444 <assert_contents> 444 <assert_contents>
445 <has_size value="130317" delta="5000"/> 445 <has_size value="130317" delta="5000"/>
446 </assert_contents> 446 </assert_contents>
447 </element> 447 </element>
448 <element name="ecoli_1K.fastq.gz_2.00.0_0.cor"> 448 <element name="ecoli_1K.fastq.gz_2.00.0_0">
449 <assert_contents> 449 <assert_contents>
450 <has_size value="130317" delta="5000"/> 450 <has_size value="130317" delta="5000"/>
451 </assert_contents> 451 </assert_contents>
452 </element> 452 </element>
453 <element name="ecoli_1K.fastq.gz__unpaired.00.0_0.cor"> 453 <element name="ecoli_1K.fastq.gz__unpaired.00.0_0">
454 <assert_contents> 454 <assert_contents>
455 <has_size value="20" delta="5"/> 455 <has_size value="20" delta="5"/>
456 </assert_contents> 456 </assert_contents>
457 </element> 457 </element>
458 </output_collection> 458 </output_collection>