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comparison spades.xml @ 20:78ced22d09a2 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/spades commit a09a5e3ee3c76550526f082b97de8da75181a1dd
author iuc
date Wed, 13 Jul 2022 07:41:05 +0000
parents 9be710099b99
children a789e163a670
comparison
equal deleted inserted replaced
19:9be710099b99 20:78ced22d09a2
159 <has_n_lines n="0"/> 159 <has_n_lines n="0"/>
160 </assert_contents> 160 </assert_contents>
161 </output> 161 </output>
162 <output name="out_cs"> 162 <output name="out_cs">
163 <assert_contents> 163 <assert_contents>
164 <has_n_lines n="1"/> 164 <has_n_lines n="2"/>
165 <has_text_matching expression="#name&#009;length&#009;coverage"/> 165 <has_text_matching expression="#name&#009;length&#009;coverage"/>
166 <has_text_matching expression="NODE_1&#009;1000&#009;225.723888"/>
166 </assert_contents> 167 </assert_contents>
167 </output> 168 </output>
168 <output name="out_l"> 169 <output name="out_l">
169 <assert_contents> 170 <assert_contents>
170 <has_text_matching expression="Thank you for using SPAdes!"/> 171 <has_text_matching expression="Thank you for using SPAdes!"/>
673 <has_n_lines n="18"/> 674 <has_n_lines n="18"/>
674 <has_text_matching expression=">NODE\_1\_length\_1000.+"/> 675 <has_text_matching expression=">NODE\_1\_length\_1000.+"/>
675 </assert_contents> 676 </assert_contents>
676 </output> 677 </output>
677 </test> 678 </test>
679 <!-- #17 Fix stats script -->
680 <test expect_num_outputs="1">
681 <conditional name="singlePaired">
682 <param name="sPaired" value="single"/>
683 <param name="input1" value="ecoli_1K.fastq.gz"/>
684 </conditional>
685 <param name="optional_output" value="ss"/>
686 <output name="out_ss">
687 <assert_contents>
688 <has_n_lines n="2"/>
689 <has_text text="NODE_1&#009;1000&#009;140.620106"/>
690 <has_text_matching expression="#name&#009;length&#009;coverage"/>
691 </assert_contents>
692 </output>
693 </test>
678 </tests> 694 </tests>
679 <help><![CDATA[ 695 <help><![CDATA[
680 .. class:: infomark 696 .. class:: infomark
681 697
682 **What it does** 698 **What it does**