Mercurial > repos > nml > spades

comparison spades.xml @ 21:a789e163a670 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/spades commit 35f71aa486d8754ee6a8387659032fc7c93d1be3
author iuc
date Wed, 10 Aug 2022 13:13:59 +0000
parents 78ced22d09a2
children 33368fec3b70
comparison
equal deleted inserted replaced
20:78ced22d09a2 21:a789e163a670
16 #end if 16 #end if
17 @PREPROCESS_NANOPORE_PACBIO_FILES@ 17 @PREPROCESS_NANOPORE_PACBIO_FILES@
18 @PREPROCESS_CONTIGS_FILES@ 18 @PREPROCESS_CONTIGS_FILES@
19 @PREPROCESS_SANGER_FILES@ 19 @PREPROCESS_SANGER_FILES@
20 20
21 @OMP_THREADS@
21 ## run 22 ## run
22 spades.py 23 spades.py
23 $operation_mode 24 $operation_mode
24 -o 'output' 25 -o 'output'
25 @RESOURCES@ 26 @RESOURCES@
729 730
730 .. class:: infomark 731 .. class:: infomark
731 732
732 **References** 733 **References**
733 734
734 More information are available on `github <https://github.com/ablab/spades>`_ and on the `project website <http://cab.spbu.ru/software/spades>`_. 735 More information are available on `github <https://github.com/ablab/spades>`_.
735 ]]></help> 736 ]]></help>
736 <expand macro="citations"> 737 <expand macro="citations">
737 <citation type="doi">10.1089/cmb.2012.0021</citation> 738 <citation type="doi">10.1089/cmb.2012.0021</citation>
738 <citation type="doi">10.1007/978-3-642-37195-0_13</citation> 739 <citation type="doi">10.1007/978-3-642-37195-0_13</citation>
739 </expand> 740 </expand>