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comparison spades.xml @ 2:e37014a072e9 draft

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planemo upload commit 733f396b6a4397c3b133bcb6fb3c10f5970db230-dirty
author nml
date Tue, 31 May 2016 15:43:30 -0400
parents 80f079961dc9
children 6dff6ed33cd7
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1:80f079961dc9 2:e37014a072e9
1 <tool id="spades" name="spades" version="1.2"> 1 <tool id="spades" name="spades" version="1.3.1">
2 <description>SPAdes genome assembler for regular and single-cell projects</description> 2 <description>SPAdes genome assembler for regular and single-cell projects</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="3.6.2">spades</requirement> 4 <requirement type="package" version="3.8.0">spades</requirement>
5 </requirements> 5 </requirements>
6 <command interpreter="perl">spades.pl 6 <command interpreter="perl">spades.pl
7 $out_contigs 7 $out_contigs
8 $out_contig_stats 8 $out_contig_stats
9 $out_scaffolds 9 $out_scaffolds
220 <help> 220 <help>
221 **What it does** 221 **What it does**
222 222
223 SPAdes – St. Petersburg genome assembler – is intended for both standard isolates and single-cell MDA bacteria assemblies. See http://bioinf.spbau.ru/en/spades for more details on SPAdes. 223 SPAdes – St. Petersburg genome assembler – is intended for both standard isolates and single-cell MDA bacteria assemblies. See http://bioinf.spbau.ru/en/spades for more details on SPAdes.
224 224
225 This wrapper runs SPAdes 3.6.2, collects the output, and throws away all the temporary files. It also produces a tab file with contig names, length and coverage. 225 This wrapper runs SPAdes 3.8, collects the output, and throws away all the temporary files. It also produces a tab file with contig names, length and coverage.
226 226
227 **License** 227 **License**
228 228
229 SPAdes is developed by and copyrighted to Saint-Petersburg Academic University, and is released under GPLv2. 229 SPAdes is developed by and copyrighted to Saint-Petersburg Academic University, and is released under GPLv2.
230 230