Mercurial > repos > nml > spades

diff spades.xml @ 12:1796ea206dec draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/spades commit a66345b894a128f7cb44876cc9a51f48c5213d95"
author iuc
date Thu, 16 Sep 2021 15:26:12 +0000
parents b8d633fbf5f5
children b7829778729f
line wrap: on
line diff
--- a/spades.xml	Thu Nov 21 11:13:06 2019 -0500
+++ b/spades.xml	Thu Sep 16 15:26:12 2021 +0000
@@ -1,5 +1,8 @@
 <tool id="spades" name="SPAdes" version="@TOOL_VERSION@+galaxy1">
     <description>genome assembler for regular and single-cell projects</description>
+    <xrefs>
+        <xref type="bio.tools">spades</xref>
+    </xrefs>
     <macros>
         <import>macros.xml</import>
     </macros>
@@ -21,7 +24,7 @@
     <![CDATA[
     ## A real command looks like: spades.py -k 21,33,55,77,99,127 --careful -1 Y.fastq.gz -2 X.fastq.gz -t 24 -o output
 
-    if [[ -n \$GALAXY_MEMORY_MB ]]; then
+    if [ -n "\$GALAXY_MEMORY_MB" ]; then
         GALAXY_MEMORY_GB=\$(( GALAXY_MEMORY_MB / 1024 ));
     fi &&