Mercurial > repos > nml > spades

diff spades.xml @ 22:33368fec3b70 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/spades commit 69c6e337e239e84ce8fec9cf9fb5d820136877b2
author iuc
date Tue, 23 Aug 2022 07:58:51 +0000
parents a789e163a670
children a90db5dbaaf3
line wrap: on
line diff
--- a/spades.xml	Wed Aug 10 13:13:59 2022 +0000
+++ b/spades.xml	Tue Aug 23 07:58:51 2022 +0000
@@ -312,17 +312,17 @@
             <param name="mode_sel" value="--careful"/>
             <param name="optional_output" value="cr,l"/>
             <output_collection name="out_cr" type="list" count="3">
-                <element name="ecoli_1K.fastq.gz_1.00.0_0.cor">
+                <element name="ecoli_1K.fastq.gz_1.00.0_0">
                     <assert_contents>
                         <has_size value="130317" delta="5000"/>
                     </assert_contents>
                 </element>
-                <element name="ecoli_1K.fastq.gz_2.00.0_0.cor">
+                <element name="ecoli_1K.fastq.gz_2.00.0_0">
                     <assert_contents>
                         <has_size value="130317" delta="5000"/>
                     </assert_contents>
                 </element>
-                <element name="ecoli_1K.fastq.gz__unpaired.00.0_0.cor">
+                <element name="ecoli_1K.fastq.gz__unpaired.00.0_0">
                     <assert_contents>
                         <has_size value="20" delta="5"/>
                     </assert_contents>
@@ -344,17 +344,17 @@
             <param name="mode_sel" value="--careful,--sc"/>
             <param name="optional_output" value="cr,l"/>
             <output_collection name="out_cr" type="list" count="3">
-                <element name="ecoli_1K.fastq.gz_1.00.0_0.cor">
+                <element name="ecoli_1K.fastq.gz_1.00.0_0">
                     <assert_contents>
                         <has_size value="130317" delta="5000"/>
                     </assert_contents>
                 </element>
-                <element name="ecoli_1K.fastq.gz_2.00.0_0.cor">
+                <element name="ecoli_1K.fastq.gz_2.00.0_0">
                     <assert_contents>
                         <has_size value="130317" delta="5000"/>
                     </assert_contents>
                 </element>
-                <element name="ecoli_1K.fastq.gz__unpaired.00.0_0.cor">
+                <element name="ecoli_1K.fastq.gz__unpaired.00.0_0">
                     <assert_contents>
                         <has_size value="20" delta="5"/>
                     </assert_contents>
@@ -408,17 +408,17 @@
             </conditional>
             <param name="optional_output" value="cr,l"/>
             <output_collection name="out_cr" type="list" count="3">
-                <element name="ecoli_1K.fastq.gz_1.00.0_0.cor">
+                <element name="ecoli_1K.fastq.gz_1.00.0_0">
                     <assert_contents>
                         <has_size value="130317" delta="5000"/>
                     </assert_contents>
                 </element>
-                <element name="ecoli_1K.fastq.gz_2.00.0_0.cor">
+                <element name="ecoli_1K.fastq.gz_2.00.0_0">
                     <assert_contents>
                         <has_size value="130317" delta="5000"/>
                     </assert_contents>
                 </element>
-                <element name="ecoli_1K.fastq.gz__unpaired.00.0_0.cor">
+                <element name="ecoli_1K.fastq.gz__unpaired.00.0_0">
                     <assert_contents>
                         <has_size value="20" delta="5"/>
                     </assert_contents>
@@ -440,17 +440,17 @@
             <param name="mode_sel" value="--sc"/>
             <param name="optional_output" value="cr,l"/>
             <output_collection name="out_cr" type="list" count="3">
-                <element name="ecoli_1K.fastq.gz_1.00.0_0.cor">
+                <element name="ecoli_1K.fastq.gz_1.00.0_0">
                     <assert_contents>
                         <has_size value="130317" delta="5000"/>
                     </assert_contents>
                 </element>
-                <element name="ecoli_1K.fastq.gz_2.00.0_0.cor">
+                <element name="ecoli_1K.fastq.gz_2.00.0_0">
                     <assert_contents>
                         <has_size value="130317" delta="5000"/>
                     </assert_contents>
                 </element>
-                <element name="ecoli_1K.fastq.gz__unpaired.00.0_0.cor">
+                <element name="ecoli_1K.fastq.gz__unpaired.00.0_0">
                     <assert_contents>
                         <has_size value="20" delta="5"/>
                     </assert_contents>