Mercurial > repos > nml > spades
view CHANGE @ 2:e37014a072e9 draft
planemo upload commit 733f396b6a4397c3b133bcb6fb3c10f5970db230-dirty
author | nml |
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date | Tue, 31 May 2016 15:43:30 -0400 |
parents | 009c00203195 |
children | 35cb17bd8bf9 |
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1.3 === - Supports SPades 3.8 - CHANGE: Improved running time and RAM consumption. 1.2 === - Supports SPades 3.6.2 1.1 === - Supports SPades 3.6.1 1.0 === - Supports SPAdes 3.5.0 - New MismatchCorrector module. - Support for Oxford Nanopore long reads. - Support for Lucigen NxMate mate-pair libraries. - Possibility to specify coverage cutoff: automatic and manual. - CHANGE: Better running time. - CHANGE: Improved RAM consumption. - CHANGE: High-quality mate-pairs are now assumed to have forward-revers orientation (same as paired-end). FIX: Fixed FASTG format. 0.9 === - Supports SPAdes 3.1.1 - Supports Mate-pair only assembly with high-quality libraries - Added support for List Paired Collection for files in a library. - Renaming of contig names in scaffolds and contig files if List Paired Collection given 0.7 === (thanks to Nicola Soranzo for fixing these bugs) - spades.pl doesn't die when NODE number is 0 - removed the --rectangles option (will be deprecated in SPAdes 2.6), because it uses a different seqid format - switched the --threads parameter to $GALAXY_SLOTS - a few minor improvements 0.6 === - Supports SPAdes 2.5.1 - Disables gzipped output for corrected reads - Removes the hack that was necessary to accept .dat files (thanks to SPAdes new input format - Adds licensing information (started at version 0.6)