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comparison staramr_search.xml @ 19:3548a93b39c1 draft default tip

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planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/staramr commit b534dcd63f07469e6e24257a0491a8badcbfc95d
author nml
date Wed, 18 Dec 2024 19:43:50 +0000
parents 3b22de20bd4b
children
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18:3b22de20bd4b 19:3548a93b39c1
1 <tool id="staramr_search" name="staramr" version="@VERSION@+galaxy1" profile="16.04"> 1 <tool id="staramr_search" name="staramr" version="@VERSION@+galaxy0" profile="16.04">
2 <description>Scans genome assemblies against the ResFinder, PlasmidFinder, and PointFinder databases searching for AMR genes.</description> 2 <description>Scans genome assemblies against the ResFinder, PlasmidFinder, and PointFinder databases searching for AMR genes.</description>
3 <macros> 3 <macros>
4 <token name="@VERSION@">0.10.0</token> 4 <token name="@VERSION@">0.11.0</token>
5 </macros> 5 </macros>
6 <xrefs>
7 <xref type="bio.tools">staramr</xref>
8 </xrefs>
6 <requirements> 9 <requirements>
7 <requirement type="package" version="@VERSION@">staramr</requirement> 10 <requirement type="package" version="@VERSION@">staramr</requirement>
8 <!-- The staramr conda package includes the mlst software, but the list of schemes
9 changes depending on the version. I specify the exact version here to make sure
10 the list of schemes provided is consistent -->
11 <requirement type="package" version="2.23.0">mlst</requirement>
12 </requirements> 11 </requirements>
13 <version_command>staramr --version</version_command> 12 <version_command>staramr --version</version_command>
14 <command detect_errors="exit_code"><![CDATA[ 13 <command detect_errors="exit_code"><![CDATA[
15 #import re 14 #import re
16 15