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view test-data/test1-pointfinder.tsv @ 19:3548a93b39c1 draft default tip

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planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/staramr commit b534dcd63f07469e6e24257a0491a8badcbfc95d
author nml
date Wed, 18 Dec 2024 19:43:50 +0000
parents 141afacabcfa
children
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Isolate ID	Gene	Predicted Phenotype	CGE Predicted Phenotype	Type	Position	Mutation	%Identity	%Overlap	HSP Length/Total Length	Contig	Start	End	Pointfinder Position	CGE Notes	CGE Required Mutation	CGE Mechanism	CGE PMID
16S-rc_gyrA-rc_beta-lactam.fsa	16S_rrsD (C1065T)	spectinomycin	Spectinomycin	nucleotide	1065	C -> T	99.94	100.00	1544/1544	16S_rrsD	1604	61	C1065T			Target modification	12402084
16S-rc_gyrA-rc_beta-lactam.fsa	gyrA (A67P)	ciprofloxacin I/R, nalidixic acid	Nalidixic acid,Ciprofloxacin	codon	67	GCC -> CCC (A -> P)	99.96	100.00	2637/2637	16S_rrsD	4317	1681	A67P		gyrA_G81C.S.H.D	Target modification	7492118