Mercurial > repos > nml > stringmlst
comparison README.rst @ 0:fc0f15ca12e0 draft
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| author | nml |
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| date | Mon, 24 Oct 2016 13:15:20 -0400 |
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| 1 stringMLST | |
| 2 | |
| 3 Fast k-mer based tool for multi locus sequence typing (MLST) stringMLST is a tool for detecting the MLST of an isolate directly from the genome sequencing reads. stringMLST predicts the ST of an isolate in a completely assembly and alignment free manner. The tool is designed in a light-weight, platform-independent fashion with minimum dependencies. | |
| 4 | |
| 5 Reference http://jordan.biology.gatech.edu/page/software/stringmlst/ | |
| 6 | |
| 7 Abstract http://bioinformatics.oxfordjournals.org/content/early/2016/09/06/bioinformatics.btw586.short?rss=1 | |
| 8 | |
| 9 Application Note http://bioinformatics.oxfordjournals.org/content/early/2016/09/06/bioinformatics.btw586.full.pdf+html | |
| 10 | |
| 11 Manual http://jordan.biology.gatech.edu/page/software/stringmlst/stringMLST-useageDocumentation.pdf | |
| 12 | |
| 13 Public repository https://github.com/anujg1991/stringMLST | |
| 14 | |
| 15 | |
| 16 | |
| 17 License listed below: | |
| 18 | |
| 19 LICENSE TERMS FOR stringMLST | |
| 20 | |
| 21 1\. INTENT/PURPOSE: | |
| 22 | |
| 23 stringMLST is free for academic users and requires permission before any commercial use for any version of this code/algorithm. | |
| 24 If you are a commercial user, please contact king.jordan@biology.gatech.edu for permissions. | |
| 25 | |
| 26 2\. LICENSEE: | |
| 27 | |
| 28 Any person or organization who receives the software with a copy of this license. | |
| 29 | |
| 30 3\. INTELLECTUAL PROPERTY LICENSED: | |
| 31 | |
| 32 The rights to use, copy, modify, and compile the software, | |
| 33 subject to the restrictions described in the present document. | |
| 34 | |
| 35 5\. SCOPE OF THE LICENSE | |
| 36 | |
| 37 \* NON-COMMERCIAL license for research and evaluation purposes ONLY. | |
| 38 | |
| 39 \* NO right to commercialize the software, or any derivative work, | |
| 40 without separate agreement with the copyright owners. | |
| 41 | |
| 42 6\. MODIFICATION | |
| 43 | |
| 44 \* License permits licensee to modify the software for their | |
| 45 research and evaluation purposes. | |
| 46 | |
| 47 7\. REDISTRIBUTION | |
| 48 | |
| 49 \* License permits licensee to redistribute verbatim copies | |
| 50 of the software, accompanied with a copy of this license. | |
| 51 | |
| 52 \* License does not permit licensee to redistribute | |
| 53 modified versions of the software. | |
| 54 | |
| 55 \* License does not permit licensee to commercialize the software | |
| 56 or any derivative work of the software. | |
| 57 | |
| 58 8\. FEE/ROYALTY | |
| 59 | |
| 60 \* Licensee pays no royalty for non-commercial license | |
| 61 | |
| 62 \* Licensee and any third parties must enter a new agreement | |
| 63 for any use beyond scope of license. | |
| 64 | |
| 65 9\. NO WARRANTY | |
| 66 | |
| 67 The software is provided "as is" without warranty of any kind, | |
| 68 either expressed or implied, including, but not limited to, the implied | |
| 69 warranties of merchantability and fitness for a particular purpose. | |
| 70 The entire risk as to the quality and performance of | |
| 71 the program is with the Licensee. | |
| 72 | |
| 73 10\. NO LIABILITY | |
| 74 | |
| 75 In no event unless required by applicable law or agreed to in writing | |
| 76 will any copyright owner be liable to Licensee for damages, including any | |
| 77 general, special, incidental or consequential damages arising out of the | |
| 78 use or inability to use the program (including but not limited to loss of | |
| 79 data or data being rendered inaccurate or losses sustained by Licensee | |
| 80 or third parties or a failure of the program to operate with other programs), | |
| 81 even if such holder has been advised of the possibility of such damages. |