Mercurial > repos > nml > suite_snvphyl_1_2_1

diff repository_dependencies.xml @ 0:46d881dd44a8 draft default tip

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"planemo upload for repository https://github.com/phac-nml/snvphyl-galaxy commit 1ff2aff957f1a515b177e97ab1662a955a8e3a25"
author nml
date Tue, 01 Sep 2020 20:54:57 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/repository_dependencies.xml	Tue Sep 01 20:54:57 2020 -0400
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+<?xml version="1.0" ?>
+<repositories description="A suite of tools associated with SNVphyl pipeline">
+    <repository changeset_revision="9ea374bb0350" name="regex_find_replace" owner="jjohnson" toolshed="https://toolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="ef2c525bd8cd" name="freebayes" owner="devteam" toolshed="https://toolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="f65383c7ed49" name="bcftools_mpileup" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="c4a9b38b435d" name="bcftools_view" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="5801eff9ac7e" name="bcftools_call" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="2bf47d57ebb5" name="phyml" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="5ba47ab90254" name="smalt" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="48922d9ca355" name="filter_vcf" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="4d3e3d7aa0c4" name="snv_matrix" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="7e6be57de1a0" name="find_repeats" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="d2096d0c149e" name="vcf2snvalignment" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="4c249c0aebad" name="consolidate_vcfs" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="705ebd286b57" name="bundle_collections" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="80b7566e62ec" name="verify_map" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="2fbea749a1d1" name="filter_stats" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="c9a43abcd993" name="filter_density" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="90981f86000f" name="collapse_collections" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="1cf81ca17e9d" name="positions2snv_alignment" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="5dc704146cc6" name="positions2snv_invariant_alignment" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu"/>
+</repositories>
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