Mercurial > repos > nml > suite_snvphyl_1_2_3

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"planemo upload for repository https://github.com/phac-nml/snvphyl-galaxy commit bb28dd21d9b6016b1e25bc1c63e266dd8372af21"
author nml
date Wed, 09 Jun 2021 22:16:42 +0000
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-1:000000000000 0:bc72925159fc
1 <?xml version="1.0" ?>
2 <repositories description="A suite of tools associated with SNVphyl pipeline">
3 <repository name="regex_find_replace" owner="galaxyp" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="ae8c4b2488e7"/>
4 <repository name="freebayes" owner="devteam" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="ef2c525bd8cd"/>
5 <repository name="bcftools_mpileup" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="0dbff46d5a1b"/>
6 <repository name="bcftools_view" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="98d5499ead46"/>
7 <repository name="bcftools_call" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="072f606e2e69"/>
8 <repository name="phyml" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="2bf47d57ebb5"/>
9 <repository name="smalt" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="5ba47ab90254"/>
10 <repository name="filter_vcf" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="48922d9ca355"/>
11 <repository name="snv_matrix" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="4d3e3d7aa0c4"/>
12 <repository name="find_repeats" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="7e6be57de1a0"/>
13 <repository name="vcf2snvalignment" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="d2096d0c149e"/>
14 <repository name="consolidate_vcfs" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="4c249c0aebad"/>
15 <repository name="bundle_collections" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="705ebd286b57"/>
16 <repository name="verify_map" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="80b7566e62ec"/>
17 <repository name="filter_stats" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="2fbea749a1d1"/>
18 <repository name="filter_density" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="c9a43abcd993"/>
19 <repository name="collapse_collections" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="90981f86000f"/>
20 <repository name="positions2snv_alignment" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="1cf81ca17e9d"/>
21 <repository name="positions2snv_invariant_alignment" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="5dc704146cc6"/>
22 </repositories>