Mercurial > repos > nml > vcf2snvalignment

comparison vcf2snvalignment.xml @ 1:d2096d0c149e draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/phac-nml/snvphyl-galaxy commit 57067916cb7b9c5b65c1da59d4bbb846c3e3af2f"
author nml
date Tue, 23 Jun 2020 10:27:53 -0400
parents 7d66bf698382
children
comparison
equal deleted inserted replaced
0:7d66bf698382 1:d2096d0c149e
1 <tool id="vcf2snvalignment" name="VCF 2 snvalignment" version ="1.8.2"> 1 <tool id="vcf2snvalignment" name="VCF 2 snvalignment" version="@VERSION@+galaxy1">
2 <description>create a snv alignment from multiple merged VCF files</description> 2 <description>create a snv alignment from multiple merged VCF files</description>
3 <requirements> 3 <macros>
4 <requirement type="package" version="1.8.2">snvphyl-tools</requirement> 4 <import>macros.xml</import>
5 </requirements> 5 </macros>
6 <expand macro="requirements"/>
6 <command detect_errors="exit_code"><![CDATA[ 7 <command detect_errors="exit_code"><![CDATA[
7 8
8 9
9 #for $f in $vcf_collection.keys# 10 #for $f in $vcf_collection.keys#
10 #set $name = str($vcf_collection[$f]).split('/')[-1] 11 #set $name = str($vcf_collection[$f]).split('/')[-1]
87 </tests> 88 </tests>
88 89
89 <help> 90 <help>
90 Produces an alignment of SNVs from the merged variant/non-variant calls produced from the "consolidate_vcfs" tool. 91 Produces an alignment of SNVs from the merged variant/non-variant calls produced from the "consolidate_vcfs" tool.
91 </help> 92 </help>
92 93 <expand macro="citations"/>
93 <citations>
94 </citations>
95
96 </tool> 94 </tool>